Wall clock time and date at job start Mon Mar 30 2020 07:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 120.00164 * 2 1 4 4 H 1.48498 * 109.47279 * 239.99859 * 3 2 1 5 5 H 1.48503 * 109.47360 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47394 * 119.99974 * 3 2 1 7 7 C 1.37877 * 119.99448 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99664 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00277 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47086 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.47196 * 179.97438 * 10 9 7 12 12 C 1.35011 * 120.01539 * 89.99735 * 11 10 9 13 13 O 1.22000 * 120.69481 * 0.05146 * 12 11 10 14 14 C 1.40848 * 118.61198 * 180.02562 * 12 11 10 15 15 C 1.36437 * 118.58754 * 0.25970 * 14 12 11 16 16 Cl 1.73603 * 120.06798 * 179.74155 * 15 14 12 17 17 N 1.33645 * 119.86631 * 359.51176 * 15 14 12 18 18 C 1.30607 * 121.46654 * 0.47881 * 17 15 14 19 19 C 1.50699 * 119.25176 * 179.75989 * 18 17 15 20 20 C 1.53006 * 117.49828 * 43.64403 * 19 18 17 21 21 C 1.53001 * 59.99939 * 252.50924 * 20 19 18 22 22 H 0.97007 * 119.99806 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47187 * 59.99894 * 9 7 2 24 24 H 1.09000 * 109.47096 * 300.00330 * 9 7 2 25 25 H 1.09003 * 109.46648 * 60.00555 * 10 9 7 26 26 H 1.09000 * 109.47388 * 300.00109 * 10 9 7 27 27 H 1.08002 * 120.70201 * 179.97438 * 14 12 11 28 28 H 1.08998 * 115.55221 * 189.34592 * 19 18 17 29 29 H 1.09000 * 117.49861 * 359.97438 * 20 19 18 30 30 H 1.08999 * 117.50016 * 145.02215 * 20 19 18 31 31 H 1.08997 * 117.50324 * 252.51178 * 21 20 19 32 32 H 1.09003 * 117.52117 * 107.47327 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5126 -4.9308 0.0001 12 6 1.1744 -5.5160 -1.1687 13 8 1.4733 -4.9999 -2.2330 14 6 0.4699 -6.7351 -1.1336 15 6 0.1535 -7.2716 0.0803 16 17 -0.7200 -8.7693 0.1684 17 7 0.5215 -6.6442 1.2015 18 6 1.1752 -5.5140 1.1672 19 6 1.5607 -4.8467 2.4622 20 6 2.1296 -5.7334 3.5719 21 6 0.7159 -5.1620 3.6983 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 -0.8902 24 1 0.6246 -2.5570 0.8896 25 1 2.8717 -3.6044 0.8895 26 1 2.8718 -3.6044 -0.8905 27 1 0.1821 -7.2323 -2.0482 28 1 1.9603 -3.8368 2.3700 29 1 2.2246 -6.7994 3.3653 30 1 2.9037 -5.3069 4.2098 31 1 0.5599 -4.3596 4.4193 32 1 -0.1191 -5.8517 3.5746 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166369511.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:00 Heat of formation + Delta-G solvation = 1.956982 kcal Electronic energy + Delta-G solvation = -18089.124839 eV Core-core repulsion = 15076.123085 eV Total energy + Delta-G solvation = -3013.001754 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.14861 -39.40443 -38.42707 -37.29211 -36.91111 -35.04369 -32.03182 -31.93866 -27.59999 -26.80245 -24.99594 -23.22914 -23.06931 -22.04990 -20.06920 -19.00059 -18.34394 -17.48624 -17.34020 -16.58089 -16.46317 -16.06549 -15.50664 -15.02169 -14.80295 -14.70405 -14.43476 -13.92493 -13.34545 -13.22883 -12.81988 -12.67829 -12.54864 -12.30422 -12.15997 -12.04249 -11.68427 -11.56885 -11.46725 -11.31069 -11.22832 -10.90971 -10.61545 -9.67242 -8.25570 -6.39019 -0.70582 0.39718 0.47805 1.31011 1.43279 1.46015 1.53587 2.20400 2.39771 2.67122 2.97260 3.09692 3.29839 3.49195 3.85215 4.00335 4.06773 4.09083 4.27978 4.35168 4.38703 4.61498 4.85441 4.88233 5.01151 5.17118 5.25013 5.34960 5.35240 5.50843 5.70617 6.04930 6.40729 6.57847 6.75608 7.31777 8.86621 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.023226 B = 0.005425 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.265296 B = 5160.170334 C = 5859.071549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.255 1.255 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.027 3.973 10 C 0.099 3.901 11 N -0.509 5.509 12 C 0.511 3.489 13 O -0.572 6.572 14 C -0.302 4.302 15 C 0.242 3.758 16 Cl 0.009 6.991 17 N -0.550 5.550 18 C 0.458 3.542 19 C -0.173 4.173 20 C -0.113 4.113 21 C -0.131 4.131 22 H 0.265 0.735 23 H -0.025 1.025 24 H 0.012 0.988 25 H 0.126 0.874 26 H 0.081 0.919 27 H 0.175 0.825 28 H 0.140 0.860 29 H 0.106 0.894 30 H 0.134 0.866 31 H 0.122 0.878 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.983 -14.405 9.164 17.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.179 1.179 7 C -0.580 4.580 8 H 0.093 0.907 9 C -0.011 4.011 10 C -0.021 4.021 11 N -0.222 5.222 12 C 0.312 3.688 13 O -0.453 6.453 14 C -0.328 4.328 15 C 0.092 3.908 16 Cl 0.038 6.962 17 N -0.276 5.276 18 C 0.197 3.803 19 C -0.193 4.193 20 C -0.151 4.151 21 C -0.169 4.169 22 H 0.074 0.926 23 H -0.007 1.007 24 H 0.031 0.969 25 H 0.144 0.856 26 H 0.100 0.900 27 H 0.192 0.808 28 H 0.158 0.842 29 H 0.125 0.875 30 H 0.152 0.848 31 H 0.140 0.860 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.711 -14.534 9.071 17.345 hybrid contribution -0.105 1.138 -1.530 1.909 sum 2.606 -13.396 7.541 15.592 Atomic orbital electron populations 1.70110 1.08082 1.28137 1.50776 1.25972 0.95655 1.03531 0.94185 0.85423 0.78162 0.77551 0.79467 1.19700 1.21248 1.17928 1.21377 0.93944 0.90865 1.51829 0.90704 1.19177 0.94115 0.92429 0.95358 1.22386 0.95451 0.79197 1.05100 1.46919 1.45315 1.22608 1.07364 1.17446 0.81562 0.86518 0.83298 1.90937 1.57899 1.67094 1.29368 1.22631 1.11376 0.98521 1.00285 1.21697 0.90519 0.89327 0.89220 1.98414 1.72372 1.26890 1.98559 1.67623 1.21181 1.09667 1.29161 1.22570 0.84114 0.85992 0.87622 1.21440 1.12054 1.01502 0.84274 1.23207 0.97447 0.98985 0.95453 1.23158 0.95672 1.03591 0.94460 0.92631 1.00669 0.96950 0.85590 0.90038 0.80790 0.84191 0.87519 0.84792 0.85956 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.53 13.29 21.45 0.28 -55.25 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.97 42.36 29.54 68.60 2.03 44.39 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 7 C -0.54 -29.04 9.11 25.60 0.23 -28.81 16 8 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 9 C 0.03 1.38 5.21 29.85 0.16 1.53 16 10 C 0.10 3.96 4.68 86.38 0.40 4.37 16 11 N -0.51 -19.17 2.57 -640.37 -1.65 -20.82 16 12 C 0.51 21.04 7.44 84.84 0.63 21.67 16 13 O -0.57 -28.12 16.78 -5.32 -0.09 -28.21 16 14 C -0.30 -10.06 9.84 22.49 0.22 -9.84 16 15 C 0.24 7.12 7.28 84.00 0.61 7.73 16 16 Cl 0.01 0.20 29.12 -2.72 -0.08 0.12 16 17 N -0.55 -16.26 9.43 -178.43 -1.68 -17.94 16 18 C 0.46 14.30 7.25 138.19 1.00 15.30 16 19 C -0.17 -4.25 5.42 -11.54 -0.06 -4.31 16 20 C -0.11 -1.85 10.10 30.60 0.31 -1.54 16 21 C -0.13 -2.53 10.02 30.60 0.31 -2.23 16 22 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 23 H -0.03 -1.53 8.14 -2.39 -0.02 -1.55 16 24 H 0.01 0.64 8.04 -2.39 -0.02 0.62 16 25 H 0.13 4.06 6.10 -2.39 -0.01 4.05 16 26 H 0.08 3.49 7.45 -2.39 -0.02 3.47 16 27 H 0.17 5.11 8.06 -2.91 -0.02 5.08 16 28 H 0.14 3.68 5.92 -2.39 -0.01 3.67 16 29 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.10 2.17 7.78 -2.39 -0.02 2.15 16 Total: -1.00 -69.09 295.81 4.23 -64.86 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.14 Total: 8.21 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 4.27 Total: 4.63 kcal Atomic # 7 Polarization: -90.97 SS G_CDS: -3.04 Total: -94.01 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.09 Total: -28.21 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 17 Polarization: 0.20 SS G_CDS: -0.08 Total: 0.12 kcal Total: -69.09 4.23 -64.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166369511.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.822 kcal (2) G-P(sol) polarization free energy of solvation -69.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds