Wall clock time and date at job start Mon Mar 30 2020 07:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 5 5 C 1.38082 * 119.54321 * 84.99446 * 4 2 1 6 6 C 1.39923 * 119.02726 * 179.97438 * 5 4 2 7 7 C 1.47993 * 120.92479 * 180.02562 * 6 5 4 8 8 O 1.21557 * 120.00062 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99751 * 180.02562 * 7 6 5 10 10 C 1.36797 * 119.99928 * 180.02562 * 9 7 6 11 11 H 1.08005 * 119.99636 * 359.97438 * 10 9 7 12 12 C 1.39099 * 120.00135 * 180.02562 * 10 9 7 13 13 N 1.31321 * 120.00183 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00108 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46909 * 59.99650 * 14 12 10 16 16 H 1.48492 * 109.47429 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46984 * 300.00027 * 14 12 10 18 18 C 1.39878 * 118.15153 * 0.02562 * 6 5 4 19 19 C 1.38260 * 118.98366 * 0.02562 * 18 6 5 20 20 Cl 1.73593 * 119.56753 * 179.97438 * 19 18 6 21 21 N 1.31852 * 119.53425 * 264.72494 * 4 2 1 22 22 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 23 23 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 25 25 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 26 26 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 27 27 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 28 28 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 29 29 H 1.08000 * 120.48921 * 0.02562 * 5 4 2 30 30 H 0.96999 * 120.00044 * 359.97438 * 9 7 6 31 31 H 0.96999 * 120.00158 * 180.02562 * 13 12 10 32 32 H 1.08004 * 120.50652 * 180.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 6 2.1605 -0.0122 -2.4150 6 6 2.6285 -0.6822 -3.5507 7 6 2.7825 0.0252 -4.8415 8 8 2.5014 1.2048 -4.9255 9 7 3.2344 -0.6387 -5.9239 10 6 3.3773 0.0152 -7.1170 11 1 3.1276 1.0634 -7.1915 12 6 3.8432 -0.6699 -8.2343 13 7 4.1464 -1.9445 -8.1437 14 14 4.0376 0.2229 -9.8636 15 1 4.9994 1.3428 -9.7026 16 1 4.5471 -0.7230 -10.8887 17 1 2.7214 0.7588 -10.2945 18 6 2.9467 -2.0391 -3.4322 19 6 2.7871 -2.6602 -2.2073 20 17 3.1767 -4.3438 -2.0433 21 7 2.3485 -1.9884 -1.1597 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6766 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.9041 1.0358 -2.4639 30 1 3.4591 -1.5799 -5.8568 31 1 4.4717 -2.4222 -8.9227 32 1 3.3115 -2.5932 -4.2845 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166556016.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:58 Heat of formation + Delta-G solvation = -26.206088 kcal Electronic energy + Delta-G solvation = -17641.515260 eV Core-core repulsion = 14627.292264 eV Total energy + Delta-G solvation = -3014.222996 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.34185 -38.10393 -36.63462 -35.27805 -34.29464 -32.38154 -31.39125 -29.76657 -27.22074 -25.79498 -24.10805 -23.36194 -20.98379 -19.36256 -18.42252 -17.07481 -16.44043 -15.40565 -15.25798 -14.71373 -14.58643 -14.36709 -14.02846 -13.94150 -13.47838 -12.97713 -12.85816 -12.33587 -11.88115 -11.79561 -11.52093 -11.26625 -11.26109 -11.18173 -11.05405 -10.85607 -10.61397 -10.46017 -9.83882 -9.55836 -9.41609 -8.68063 -8.64965 -8.28130 -6.74742 -4.05465 1.06715 1.15932 1.96815 3.06324 3.12359 3.15927 3.49692 3.93245 4.23177 4.28588 4.49997 4.93345 5.08533 5.10531 5.14717 5.24254 5.29425 5.51101 5.58932 5.61870 5.71740 5.82227 5.89221 5.97582 6.12810 6.21606 6.33869 6.49908 6.70027 7.25086 7.75146 7.92095 8.29495 8.86414 9.19507 9.76035 10.40856 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.020161 B = 0.005368 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.466109 B = 5214.965910 C = 6440.534531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.150 4.150 4 C 0.144 3.856 5 C -0.128 4.128 6 C -0.033 4.033 7 C 0.454 3.546 8 O -0.591 6.591 9 N -0.528 5.528 10 C -0.294 4.294 11 H 0.112 0.888 12 C 0.027 3.973 13 N -0.878 5.878 14 Si 0.939 3.061 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.269 1.269 18 C -0.150 4.150 19 C 0.178 3.822 20 Cl -0.040 7.040 21 N -0.485 5.485 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.151 0.849 30 H 0.395 0.605 31 H 0.280 0.720 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.022 -1.021 11.677 12.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.061 4.061 3 C -0.208 4.208 4 C 0.007 3.993 5 C -0.150 4.150 6 C -0.045 4.045 7 C 0.242 3.758 8 O -0.479 6.479 9 N -0.161 5.161 10 C -0.424 4.424 11 H 0.129 0.871 12 C -0.178 4.178 13 N -0.516 5.516 14 Si 0.765 3.235 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.194 1.194 18 C -0.172 4.172 19 C 0.014 3.986 20 Cl -0.012 7.012 21 N -0.197 5.197 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.107 0.893 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.169 0.831 30 H 0.230 0.770 31 H 0.091 0.909 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.162 -0.990 12.218 12.659 hybrid contribution 0.474 -0.210 -1.595 1.677 sum -2.688 -1.200 10.623 11.023 Atomic orbital electron populations 1.21819 0.93598 1.02311 1.02249 1.20016 0.96201 0.95388 0.94445 1.21957 1.01563 0.94697 1.02570 1.20951 0.95241 0.88200 0.94928 1.22103 0.99147 1.02302 0.91403 1.20771 0.95198 0.92469 0.96046 1.17431 0.87674 0.87452 0.83243 1.90610 1.57416 1.15366 1.84474 1.41925 1.53268 1.12563 1.08362 1.19879 1.40256 0.97071 0.85206 0.87059 1.25485 0.96116 0.95713 1.00529 1.69559 1.41225 1.08361 1.32498 0.85771 0.79269 0.78872 0.79604 1.19417 1.20575 1.19414 1.22064 1.02550 0.95008 0.97612 1.21336 0.99362 0.87618 0.90299 1.98383 1.91987 1.12655 1.98175 1.66573 1.12794 1.09039 1.31334 0.92176 0.92340 0.91906 0.89256 0.91853 0.92233 0.91581 0.83142 0.77002 0.90934 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.18 37.16 0.34 -1.17 16 2 C -0.04 -0.49 3.23 -91.77 -0.30 -0.79 16 3 C -0.15 -1.59 8.62 37.16 0.32 -1.27 16 4 C 0.14 2.25 5.79 -82.64 -0.48 1.77 16 5 C -0.13 -2.24 8.74 -39.01 -0.34 -2.58 16 6 C -0.03 -0.66 5.91 -104.65 -0.62 -1.27 16 7 C 0.45 10.88 7.74 -12.26 -0.09 10.79 16 8 O -0.59 -15.87 16.02 5.32 0.09 -15.78 16 9 N -0.53 -13.09 5.23 -11.80 -0.06 -13.15 16 10 C -0.29 -7.79 9.68 -15.02 -0.15 -7.93 16 11 H 0.11 3.05 7.15 -52.48 -0.38 2.68 16 12 C 0.03 0.68 5.50 -17.45 -0.10 0.58 16 13 N -0.88 -22.34 13.05 55.50 0.72 -21.61 16 14 Si 0.94 19.61 29.55 -169.99 -5.02 14.59 16 15 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 16 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 17 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 18 C -0.15 -2.70 9.38 -38.96 -0.37 -3.06 16 19 C 0.18 3.01 7.27 -17.49 -0.13 2.88 16 20 Cl -0.04 -0.60 29.10 -51.86 -1.51 -2.11 16 21 N -0.48 -8.12 10.23 -6.68 -0.07 -8.19 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.73 6.49 -51.93 -0.34 0.40 16 29 H 0.15 2.56 5.99 -52.49 -0.31 2.24 16 30 H 0.39 9.28 6.03 -40.82 -0.25 9.04 16 31 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.15 2.55 6.54 -52.48 -0.34 2.20 16 LS Contribution 294.89 15.07 4.44 4.44 Total: -1.00 -28.51 294.89 -6.60 -35.11 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -3.29 Total: 8.76 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -1.90 Total: -2.07 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.59 Total: -42.95 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.09 Total: -15.78 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.51 Total: -2.11 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.51 -6.60 -35.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166556016.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.908 kcal (2) G-P(sol) polarization free energy of solvation -28.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds