Wall clock time and date at job start Mon Mar 30 2020 07:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 5 5 C 1.38082 * 119.54321 * 84.99446 * 4 2 1 6 6 C 1.39923 * 119.02726 * 179.97438 * 5 4 2 7 7 C 1.47993 * 120.92479 * 180.02562 * 6 5 4 8 8 O 1.21557 * 120.00062 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99751 * 180.02562 * 7 6 5 10 10 C 1.36797 * 119.99928 * 180.02562 * 9 7 6 11 11 H 1.08005 * 119.99636 * 359.97438 * 10 9 7 12 12 C 1.39099 * 120.00135 * 180.02562 * 10 9 7 13 13 N 1.31321 * 120.00183 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00108 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46909 * 59.99650 * 14 12 10 16 16 H 1.48492 * 109.47429 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46984 * 300.00027 * 14 12 10 18 18 C 1.39878 * 118.15153 * 0.02562 * 6 5 4 19 19 C 1.38260 * 118.98366 * 0.02562 * 18 6 5 20 20 Cl 1.73593 * 119.56753 * 179.97438 * 19 18 6 21 21 N 1.31852 * 119.53425 * 264.72494 * 4 2 1 22 22 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 23 23 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 25 25 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 26 26 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 27 27 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 28 28 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 29 29 H 1.08000 * 120.48921 * 0.02562 * 5 4 2 30 30 H 0.96999 * 120.00044 * 359.97438 * 9 7 6 31 31 H 0.96999 * 120.00158 * 180.02562 * 13 12 10 32 32 H 1.08004 * 120.50652 * 180.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 6 2.1605 -0.0122 -2.4150 6 6 2.6285 -0.6822 -3.5507 7 6 2.7825 0.0252 -4.8415 8 8 2.5014 1.2048 -4.9255 9 7 3.2344 -0.6387 -5.9239 10 6 3.3773 0.0152 -7.1170 11 1 3.1276 1.0634 -7.1915 12 6 3.8432 -0.6699 -8.2343 13 7 4.1464 -1.9445 -8.1437 14 14 4.0376 0.2229 -9.8636 15 1 4.9994 1.3428 -9.7026 16 1 4.5471 -0.7230 -10.8887 17 1 2.7214 0.7588 -10.2945 18 6 2.9467 -2.0391 -3.4322 19 6 2.7871 -2.6602 -2.2073 20 17 3.1767 -4.3438 -2.0433 21 7 2.3485 -1.9884 -1.1597 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6766 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.9041 1.0358 -2.4639 30 1 3.4591 -1.5799 -5.8568 31 1 4.4717 -2.4222 -8.9227 32 1 3.3115 -2.5932 -4.2845 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166556016.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:58 Heat of formation + Delta-G solvation = -43.597205 kcal Electronic energy + Delta-G solvation = -17642.269396 eV Core-core repulsion = 14627.292264 eV Total energy + Delta-G solvation = -3014.977132 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.78701 -39.93389 -37.89959 -36.40491 -36.23077 -34.00473 -33.19311 -31.08564 -28.11679 -27.59702 -25.46967 -24.90414 -22.32217 -20.92124 -20.28858 -18.66100 -17.86325 -17.04551 -16.71356 -16.32578 -16.10649 -15.80148 -15.53538 -15.27811 -14.95408 -14.60333 -13.94737 -13.61914 -13.48038 -13.01763 -12.89402 -12.65154 -12.56132 -12.42300 -12.31411 -12.13958 -12.03800 -11.82091 -11.66620 -11.07611 -10.96844 -10.52065 -10.21939 -9.98515 -8.64024 -6.08132 -0.43864 -0.22527 0.63239 1.39801 1.41638 1.52906 1.90263 2.20834 2.58538 2.79664 3.09011 3.16953 3.65638 3.76394 3.90043 4.02412 4.12241 4.21821 4.27065 4.58698 4.60251 4.82228 4.92378 4.96562 5.02973 5.16192 5.27868 5.32670 5.39490 5.41835 5.80483 6.36840 6.54672 6.91658 7.27984 7.84147 8.52029 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.020161 B = 0.005368 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.466109 B = 5214.965910 C = 6440.534531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.040 4.040 3 C -0.149 4.149 4 C 0.154 3.846 5 C -0.126 4.126 6 C -0.053 4.053 7 C 0.456 3.544 8 O -0.625 6.625 9 N -0.537 5.537 10 C -0.338 4.338 11 H 0.091 0.909 12 C -0.004 4.004 13 N -0.901 5.901 14 Si 1.002 2.998 15 H -0.268 1.268 16 H -0.267 1.267 17 H -0.268 1.268 18 C -0.148 4.148 19 C 0.175 3.825 20 Cl -0.017 7.017 21 N -0.482 5.482 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.091 0.909 25 H 0.102 0.898 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.154 0.846 30 H 0.398 0.602 31 H 0.287 0.713 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.336 -1.306 13.118 13.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.059 4.059 3 C -0.206 4.206 4 C 0.016 3.984 5 C -0.147 4.147 6 C -0.064 4.064 7 C 0.244 3.756 8 O -0.514 6.514 9 N -0.170 5.170 10 C -0.467 4.467 11 H 0.109 0.891 12 C -0.207 4.207 13 N -0.539 5.539 14 Si 0.824 3.176 15 H -0.193 1.193 16 H -0.191 1.191 17 H -0.192 1.192 18 C -0.170 4.170 19 C 0.011 3.989 20 Cl 0.012 6.988 21 N -0.194 5.194 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.109 0.891 25 H 0.120 0.880 26 H 0.110 0.890 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.171 0.829 30 H 0.234 0.766 31 H 0.096 0.904 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.470 -1.310 13.670 14.164 hybrid contribution 0.527 -0.176 -1.815 1.898 sum -2.943 -1.486 11.855 12.305 Atomic orbital electron populations 1.21821 0.92270 1.02249 1.03348 1.20197 0.97143 0.95792 0.92756 1.21966 1.01230 0.93852 1.03574 1.21583 0.93447 0.87799 0.95601 1.22249 0.98534 1.02583 0.91369 1.20488 0.97682 0.93403 0.94818 1.18029 0.86031 0.87182 0.84309 1.90565 1.58381 1.17005 1.85451 1.41906 1.54061 1.12689 1.08365 1.19851 1.43345 0.96762 0.86743 0.89100 1.26266 0.94930 0.96395 1.03104 1.69610 1.41504 1.09217 1.33598 0.84858 0.79140 0.77931 0.75702 1.19254 1.19120 1.19250 1.22037 1.02343 0.94297 0.98358 1.21459 0.98843 0.88716 0.89880 1.98391 1.91732 1.10644 1.98080 1.66771 1.12249 1.09397 1.30972 0.92901 0.92975 0.89062 0.88013 0.89026 0.92803 0.92445 0.82855 0.76595 0.90364 0.83386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.18 71.98 0.66 -1.90 16 2 C -0.04 -0.84 3.23 -11.54 -0.04 -0.88 16 3 C -0.15 -2.77 8.62 71.98 0.62 -2.15 16 4 C 0.15 4.53 5.79 42.52 0.25 4.78 16 5 C -0.13 -4.35 8.74 22.64 0.20 -4.15 16 6 C -0.05 -2.11 5.91 -19.89 -0.12 -2.23 16 7 C 0.46 22.57 7.74 86.83 0.67 23.25 16 8 O -0.62 -34.73 16.02 -3.89 -0.06 -34.79 16 9 N -0.54 -27.59 5.23 -309.52 -1.62 -29.21 16 10 C -0.34 -18.53 9.68 84.13 0.81 -17.72 16 11 H 0.09 5.24 7.15 -2.91 -0.02 5.22 16 12 C 0.00 -0.20 5.50 84.98 0.47 0.27 16 13 N -0.90 -46.24 13.05 21.69 0.28 -45.95 16 14 Si 1.00 40.38 29.55 68.60 2.03 42.40 16 15 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 16 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 17 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 18 C -0.15 -5.31 9.38 22.67 0.21 -5.09 16 19 C 0.17 5.69 7.27 84.68 0.62 6.30 16 20 Cl -0.02 -0.48 29.10 -2.72 -0.08 -0.56 16 21 N -0.48 -15.20 10.23 -175.04 -1.79 -16.99 16 22 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 23 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.06 1.18 6.49 -2.39 -0.02 1.16 16 29 H 0.15 5.19 5.99 -2.91 -0.02 5.17 16 30 H 0.40 19.39 6.03 -92.71 -0.56 18.83 16 31 H 0.29 13.63 8.31 -92.71 -0.77 12.86 16 32 H 0.15 5.20 6.54 -2.91 -0.02 5.18 16 Total: -1.00 -61.75 294.89 3.71 -58.04 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.60 Total: 26.59 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 4.35 Total: 0.47 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -3.13 Total: -92.15 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -0.06 Total: -34.79 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.40 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.08 Total: -0.56 kcal Total: -61.75 3.71 -58.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166556016.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.443 kcal (2) G-P(sol) polarization free energy of solvation -61.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds