Wall clock time and date at job start Mon Mar 30 2020 07:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 O 1.20833 * 120.00046 * 119.99902 * 4 2 1 6 6 O 1.34228 * 120.00167 * 300.00387 * 4 2 1 7 7 C 1.45196 * 117.00058 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47083 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47114 * 180.02562 * 8 7 6 10 10 H 1.07996 * 120.00092 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99841 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99934 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 119.99938 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47184 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47374 * 120.00205 * 13 11 9 16 16 H 1.48503 * 109.47316 * 239.99685 * 13 11 9 17 17 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 18 18 C 1.33386 * 125.20636 * 179.97438 * 17 2 1 19 19 C 1.38424 * 114.92354 * 179.97438 * 18 17 2 20 20 C 1.33380 * 114.91836 * 359.97438 * 19 18 17 21 21 S 1.75880 * 125.20015 * 359.69187 * 17 2 1 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 26 26 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 28 28 H 1.08998 * 109.47175 * 299.99618 * 7 6 4 29 29 H 1.09003 * 109.47330 * 60.00311 * 7 6 4 30 30 H 1.08998 * 109.47053 * 299.99999 * 8 7 6 31 31 H 1.09006 * 109.47025 * 60.00100 * 8 7 6 32 32 H 0.97000 * 120.00115 * 179.97438 * 12 11 9 33 33 H 1.08008 * 122.53871 * 359.95710 * 18 17 2 34 34 H 1.07996 * 122.53897 * 180.02562 * 19 18 17 35 35 H 1.07999 * 125.20432 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7271 -1.6928 1.1195 6 8 1.7081 -0.2519 2.4496 7 6 2.2269 -0.9865 3.5895 8 6 1.7559 -0.3193 4.8834 9 6 2.2949 -1.0813 6.0665 10 1 2.9113 -1.9544 5.9113 11 6 2.0001 -0.6644 7.3473 12 7 1.2491 0.3985 7.5364 13 14 2.6675 -1.6093 8.8139 14 1 3.4783 -2.7578 8.3354 15 1 3.5174 -0.7112 9.6363 16 1 1.5369 -2.1105 9.6360 17 6 2.0324 -0.7103 -1.2306 18 6 3.3162 -0.8907 -1.5441 19 6 3.5373 -1.5744 -2.7272 20 6 2.4329 -1.9497 -3.3742 21 16 1.0154 -1.4344 -2.4694 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.8627 -2.0133 3.5564 29 1 3.3164 -0.9861 3.5568 30 1 2.1204 0.7074 4.9162 31 1 0.6663 -0.3193 4.9164 32 1 1.0414 0.6916 8.4374 33 1 4.1223 -0.5304 -0.9220 34 1 4.5288 -1.7885 -3.0978 35 1 2.4123 -2.4905 -4.3088 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172097830.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:21 Heat of formation + Delta-G solvation = -70.531555 kcal Electronic energy + Delta-G solvation = -17939.738110 eV Core-core repulsion = 15029.177067 eV Total energy + Delta-G solvation = -2910.561043 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.39131 -38.03687 -36.07622 -35.25389 -33.32687 -30.27415 -28.78522 -27.53392 -25.35046 -24.35205 -23.21338 -21.00171 -20.24248 -19.12818 -17.28721 -17.00750 -16.11068 -15.92842 -15.86535 -15.31974 -14.53014 -13.86080 -13.81739 -13.33725 -13.03869 -12.80610 -12.59460 -12.37334 -12.36478 -12.10202 -11.90631 -11.62789 -11.34936 -11.19891 -11.01885 -10.77964 -10.73462 -10.67027 -10.06970 -9.64836 -9.59681 -9.28803 -8.74172 -8.50190 -8.45624 -6.11530 -4.15723 0.89913 1.52391 1.91641 2.56470 2.68389 3.26317 3.26884 3.34916 3.40708 4.30498 4.38790 4.70970 4.84827 4.97206 5.12831 5.25231 5.42849 5.47977 5.51942 5.61510 5.67398 5.73623 5.99582 6.04190 6.08436 6.10259 6.13119 6.26254 6.42177 6.63056 6.98636 7.55154 7.61239 7.85946 8.18551 8.26473 8.90027 9.48814 10.99988 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.040570 B = 0.003694 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.003844 B = 7577.216591 C = 7850.191881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.018 3.982 3 C -0.135 4.135 4 C 0.464 3.536 5 O -0.506 6.506 6 O -0.352 6.352 7 C 0.075 3.925 8 C 0.025 3.975 9 C -0.526 4.526 10 H 0.059 0.941 11 C 0.061 3.939 12 N -0.890 5.890 13 Si 0.899 3.101 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.162 4.162 18 C -0.112 4.112 19 C -0.131 4.131 20 C -0.221 4.221 21 S 0.106 5.894 22 H 0.086 0.914 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.263 0.737 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.276 0.433 -21.147 21.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.014 3.986 3 C -0.193 4.193 4 C 0.305 3.695 5 O -0.394 6.394 6 O -0.268 6.268 7 C 0.002 3.998 8 C -0.012 4.012 9 C -0.564 4.564 10 H 0.078 0.922 11 C -0.141 4.141 12 N -0.528 5.528 13 Si 0.726 3.274 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.279 4.279 18 C -0.142 4.142 19 C -0.161 4.161 20 C -0.356 4.356 21 S 0.371 5.629 22 H 0.105 0.895 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.699 0.082 -21.240 21.308 hybrid contribution 2.038 -0.630 1.090 2.395 sum 0.339 -0.549 -20.150 20.161 Atomic orbital electron populations 1.21970 0.91019 1.03478 1.04288 1.18845 0.97664 0.95667 0.86382 1.21884 1.01796 0.91812 1.03850 1.23169 0.77947 0.82890 0.85513 1.90642 1.35495 1.25709 1.87563 1.86503 1.69384 1.56143 1.14738 1.23656 0.98092 0.95277 0.82731 1.19170 0.97840 0.96811 0.87379 1.21021 1.32399 1.12672 0.90325 0.92232 1.24979 0.94982 0.95103 0.99076 1.69981 1.36958 1.24012 1.21870 0.86424 0.78805 0.79896 0.82246 1.19593 1.20813 1.20819 1.23959 0.96742 1.07026 1.00131 1.20050 0.96196 1.00719 0.97190 1.20137 0.99485 1.00916 0.95588 1.25633 0.95742 1.08960 1.05262 1.84086 1.09625 1.53866 1.15350 0.89516 0.91672 0.90765 0.90000 0.91812 0.90958 0.92381 0.92367 0.95332 0.95343 0.92764 0.84498 0.84384 0.82027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 7.49 37.16 0.28 -1.47 16 2 C 0.02 0.24 0.85 -156.81 -0.13 0.10 16 3 C -0.14 -1.54 8.27 37.16 0.31 -1.23 16 4 C 0.46 8.30 6.49 36.00 0.23 8.54 16 5 O -0.51 -10.32 15.08 -18.76 -0.28 -10.60 16 6 O -0.35 -7.00 10.02 -39.25 -0.39 -7.39 16 7 C 0.07 1.68 5.40 37.16 0.20 1.88 16 8 C 0.03 0.66 5.35 -27.88 -0.15 0.51 16 9 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 10 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 13 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 14 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C -0.16 -2.12 4.72 -36.00 -0.17 -2.29 16 18 C -0.11 -1.45 8.63 -41.21 -0.36 -1.80 16 19 C -0.13 -1.44 10.18 -41.21 -0.42 -1.86 16 20 C -0.22 -2.25 11.23 29.03 0.33 -1.92 16 21 S 0.11 1.17 21.84 -107.50 -2.35 -1.18 16 22 H 0.09 1.02 8.11 -51.93 -0.42 0.60 16 23 H 0.06 0.78 7.95 -51.93 -0.41 0.37 16 24 H 0.07 0.69 7.97 -51.93 -0.41 0.28 16 25 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 26 H 0.06 0.72 7.93 -51.93 -0.41 0.31 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 29 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.14 1.78 8.03 -52.48 -0.42 1.36 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 315.23 15.07 4.75 4.75 Total: -1.00 -31.30 315.23 -7.85 -39.15 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -5.00 Total: -2.52 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -0.29 Total: -13.05 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.74 Total: -25.53 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.68 Total: -18.00 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.35 Total: -1.18 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.30 -7.85 -39.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172097830.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.383 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds