Wall clock time and date at job start Mon Mar 30 2020 08:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35968 * 116.99697 * 2 1 4 4 C 1.38659 * 119.99217 * 359.97438 * 3 2 1 5 5 C 1.38380 * 120.29781 * 179.97438 * 4 3 2 6 6 C 1.37875 * 120.27621 * 359.74585 * 5 4 3 7 7 C 1.39732 * 119.96988 * 0.53722 * 6 5 4 8 8 C 1.47586 * 120.14444 * 179.74223 * 7 6 5 9 9 O 1.21485 * 120.00152 * 179.71824 * 8 7 6 10 10 O 1.34728 * 119.99876 * 359.44745 * 8 7 6 11 11 C 1.45201 * 117.00013 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47141 * 179.97438 * 11 10 8 13 13 C 1.50695 * 109.47256 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00219 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00401 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99516 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00062 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47447 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47215 * 119.99882 * 17 15 13 20 20 H 1.48501 * 109.47165 * 239.99371 * 17 15 13 21 21 C 1.38764 * 119.98728 * 180.02562 * 3 2 1 22 22 F 1.35101 * 120.13819 * 359.97438 * 21 3 2 23 23 H 1.08993 * 109.47611 * 59.99843 * 1 2 3 24 24 H 1.08996 * 109.46955 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46775 * 299.99835 * 1 2 3 26 26 H 1.08006 * 119.85043 * 0.02708 * 4 3 2 27 27 H 1.08005 * 119.86546 * 180.02562 * 5 4 3 28 28 H 1.08001 * 120.01614 * 180.27323 * 6 5 4 29 29 H 1.08996 * 109.47081 * 299.99549 * 11 10 8 30 30 H 1.08997 * 109.46773 * 59.99741 * 11 10 8 31 31 H 1.09001 * 109.47443 * 300.00074 * 12 11 10 32 32 H 1.09001 * 109.46982 * 59.99892 * 12 11 10 33 33 H 0.97001 * 119.99702 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2908 2.3743 -0.0005 5 6 1.9124 3.6106 0.0000 6 6 3.2884 3.6968 0.0063 7 6 4.0608 2.5324 0.0009 8 6 5.5341 2.6202 0.0019 9 8 6.2031 1.6062 0.0024 10 8 6.1371 3.8250 -0.0031 11 6 7.5890 3.8355 -0.0012 12 6 8.0886 5.2816 -0.0082 13 6 9.5955 5.2925 -0.0056 14 1 10.1423 4.3612 0.0001 15 6 10.2764 6.4915 -0.0104 16 7 9.6105 7.6257 -0.0179 17 14 12.1442 6.5049 -0.0064 18 1 12.6493 5.1085 0.0027 19 1 12.6369 7.2021 -1.2216 20 1 12.6316 7.2150 1.2034 21 6 3.4320 1.2839 -0.0005 22 9 4.1704 0.1525 -0.0005 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2124 2.3147 -0.0005 27 1 1.3172 4.5118 0.0000 28 1 3.7692 4.6639 0.0112 29 1 7.9548 3.3288 0.8918 30 1 7.9572 3.3199 -0.8881 31 1 7.7228 5.7881 -0.9014 32 1 7.7203 5.7975 0.8785 33 1 10.0895 8.4692 -0.0216 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179171164.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:11:01 Heat of formation + Delta-G solvation = -147.258742 kcal Electronic energy + Delta-G solvation = -19455.034371 eV Core-core repulsion = 15974.933011 eV Total energy + Delta-G solvation = -3480.101360 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.83910 -40.44182 -39.71899 -37.55137 -36.04924 -33.35839 -31.46258 -30.65322 -30.06204 -27.71700 -25.45635 -23.96916 -22.75374 -21.25120 -20.62510 -18.76775 -17.47082 -17.19518 -16.70127 -16.51813 -16.14188 -15.89655 -15.76598 -15.13703 -14.94772 -14.73035 -14.50920 -13.35354 -13.32670 -12.99979 -12.59908 -12.52851 -12.36903 -11.90671 -11.69674 -11.51290 -11.23775 -11.04655 -10.77677 -10.69746 -10.27217 -9.66943 -9.64739 -9.29278 -9.26118 -8.51390 -8.45023 -6.11201 -4.15188 0.37518 0.94996 2.57520 2.60155 3.20648 3.27856 3.35548 3.41201 3.46526 3.92023 4.36246 4.40825 4.49428 4.70214 4.75312 4.82638 4.90217 5.09036 5.25763 5.26616 5.56197 5.69070 5.93976 6.01197 6.07631 6.09132 6.23611 6.62455 6.89305 6.90396 7.54561 7.61138 7.85630 8.12632 8.23907 8.90518 9.49326 11.00402 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.048370 B = 0.003392 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.727618 B = 8251.597346 C = 8804.565828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.308 6.308 3 C 0.078 3.922 4 C -0.153 4.153 5 C -0.104 4.104 6 C -0.067 4.067 7 C -0.119 4.119 8 C 0.499 3.501 9 O -0.497 6.497 10 O -0.349 6.349 11 C 0.076 3.924 12 C 0.025 3.975 13 C -0.525 4.525 14 H 0.060 0.940 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.131 3.869 22 F -0.107 7.107 23 H 0.058 0.942 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.142 0.858 27 H 0.142 0.858 28 H 0.155 0.845 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.553 -9.583 0.047 23.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.032 3.968 4 C -0.172 4.172 5 C -0.122 4.122 6 C -0.086 4.086 7 C -0.121 4.121 8 C 0.343 3.657 9 O -0.387 6.387 10 O -0.265 6.265 11 C 0.003 3.997 12 C -0.012 4.012 13 C -0.564 4.564 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.529 5.529 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C 0.111 3.889 22 F -0.085 7.085 23 H 0.077 0.923 24 H 0.122 0.878 25 H 0.077 0.923 26 H 0.160 0.840 27 H 0.160 0.840 28 H 0.173 0.827 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.162 -9.913 0.046 23.368 hybrid contribution 0.965 -0.053 0.002 0.966 sum -20.197 -9.966 0.048 22.522 Atomic orbital electron populations 1.23137 0.77771 1.04436 1.01520 1.86162 1.21768 1.25301 1.88964 1.18739 0.90183 0.86055 1.01832 1.21365 1.00531 0.91442 1.03884 1.21023 0.94351 0.97464 0.99410 1.21467 0.93416 0.98235 0.95454 1.19181 0.91627 0.92485 1.08779 1.20668 0.88002 0.82898 0.74166 1.90873 1.66140 1.36702 1.44970 1.86553 1.26947 1.30273 1.82744 1.23724 0.71639 1.03070 1.01237 1.19182 0.95674 0.87437 0.98933 1.21019 0.90430 0.92896 1.52021 0.92154 1.24982 0.98934 0.95396 0.94854 1.69983 1.35609 0.97367 1.49921 0.86411 0.84917 0.78280 0.77691 1.19564 1.20827 1.20831 1.16890 0.85945 0.82239 1.03855 1.91601 1.76195 1.47718 1.93029 0.92334 0.87834 0.92329 0.83998 0.84007 0.82691 0.92070 0.92071 0.95262 0.95265 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.39 10.36 -19.64 -0.20 -3.60 16 3 C 0.08 0.92 6.69 -39.23 -0.26 0.66 16 4 C -0.15 -1.32 9.03 -39.37 -0.36 -1.68 16 5 C -0.10 -0.92 10.02 -39.66 -0.40 -1.31 16 6 C -0.07 -0.80 9.61 -39.16 -0.38 -1.18 16 7 C -0.12 -1.82 5.88 -104.95 -0.62 -2.43 16 8 C 0.50 9.57 7.89 34.54 0.27 9.84 16 9 O -0.50 -10.86 15.13 -19.25 -0.29 -11.16 16 10 O -0.35 -7.07 9.47 -40.57 -0.38 -7.46 16 11 C 0.08 1.70 5.41 37.16 0.20 1.91 16 12 C 0.02 0.65 5.35 -27.89 -0.15 0.50 16 13 C -0.53 -14.80 9.11 -34.44 -0.31 -15.11 16 14 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 17 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 21 C 0.13 1.98 7.30 -38.81 -0.28 1.69 16 22 F -0.11 -1.89 15.39 2.25 0.03 -1.86 16 23 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 24 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 26 H 0.14 0.74 6.27 -52.48 -0.33 0.41 16 27 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 28 H 0.16 1.77 7.61 -52.49 -0.40 1.37 16 29 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.06 1.37 8.13 -51.93 -0.42 0.95 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 300.06 15.07 4.52 4.52 Total: -1.00 -33.20 300.06 -5.59 -38.79 By element: Atomic # 1 Polarization: -2.19 SS G_CDS: -3.60 Total: -5.79 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -1.39 Total: -4.36 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.74 Total: -25.51 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.88 Total: -22.21 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.03 Total: -1.86 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.20 -5.59 -38.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179171164.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.464 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds