Wall clock time and date at job start Mon Mar 30 2020 08:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35968 * 116.99697 * 2 1 4 4 C 1.38659 * 119.99217 * 359.97438 * 3 2 1 5 5 C 1.38380 * 120.29781 * 179.97438 * 4 3 2 6 6 C 1.37875 * 120.27621 * 359.74585 * 5 4 3 7 7 C 1.39732 * 119.96988 * 0.53722 * 6 5 4 8 8 C 1.47586 * 120.14444 * 179.74223 * 7 6 5 9 9 O 1.21485 * 120.00152 * 179.71824 * 8 7 6 10 10 O 1.34728 * 119.99876 * 359.44745 * 8 7 6 11 11 C 1.45201 * 117.00013 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47141 * 179.97438 * 11 10 8 13 13 C 1.50695 * 109.47256 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00219 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00401 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99516 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00062 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47447 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47215 * 119.99882 * 17 15 13 20 20 H 1.48501 * 109.47165 * 239.99371 * 17 15 13 21 21 C 1.38764 * 119.98728 * 180.02562 * 3 2 1 22 22 F 1.35101 * 120.13819 * 359.97438 * 21 3 2 23 23 H 1.08993 * 109.47611 * 59.99843 * 1 2 3 24 24 H 1.08996 * 109.46955 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46775 * 299.99835 * 1 2 3 26 26 H 1.08006 * 119.85043 * 0.02708 * 4 3 2 27 27 H 1.08005 * 119.86546 * 180.02562 * 5 4 3 28 28 H 1.08001 * 120.01614 * 180.27323 * 6 5 4 29 29 H 1.08996 * 109.47081 * 299.99549 * 11 10 8 30 30 H 1.08997 * 109.46773 * 59.99741 * 11 10 8 31 31 H 1.09001 * 109.47443 * 300.00074 * 12 11 10 32 32 H 1.09001 * 109.46982 * 59.99892 * 12 11 10 33 33 H 0.97001 * 119.99702 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2908 2.3743 -0.0005 5 6 1.9124 3.6106 0.0000 6 6 3.2884 3.6968 0.0063 7 6 4.0608 2.5324 0.0009 8 6 5.5341 2.6202 0.0019 9 8 6.2031 1.6062 0.0024 10 8 6.1371 3.8250 -0.0031 11 6 7.5890 3.8355 -0.0012 12 6 8.0886 5.2816 -0.0082 13 6 9.5955 5.2925 -0.0056 14 1 10.1423 4.3612 0.0001 15 6 10.2764 6.4915 -0.0104 16 7 9.6105 7.6257 -0.0179 17 14 12.1442 6.5049 -0.0064 18 1 12.6493 5.1085 0.0027 19 1 12.6369 7.2021 -1.2216 20 1 12.6316 7.2150 1.2034 21 6 3.4320 1.2839 -0.0005 22 9 4.1704 0.1525 -0.0005 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2124 2.3147 -0.0005 27 1 1.3172 4.5118 0.0000 28 1 3.7692 4.6639 0.0112 29 1 7.9548 3.3288 0.8918 30 1 7.9572 3.3199 -0.8881 31 1 7.7228 5.7881 -0.9014 32 1 7.7203 5.7975 0.8785 33 1 10.0895 8.4692 -0.0216 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179171164.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:10:57 Heat of formation + Delta-G solvation = -168.009601 kcal Electronic energy + Delta-G solvation = -19455.934195 eV Core-core repulsion = 15974.933011 eV Total energy + Delta-G solvation = -3481.001184 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -50.00874 -41.65204 -40.87129 -38.47749 -37.69113 -35.46693 -32.74906 -31.94212 -31.36342 -28.27859 -27.30776 -25.33917 -23.65537 -23.01300 -22.10436 -19.83953 -18.83234 -18.31576 -18.19531 -17.75677 -17.59362 -17.17483 -17.14901 -16.49112 -16.12881 -15.72821 -15.58667 -15.12921 -14.72273 -14.39095 -14.01209 -13.50606 -13.44719 -13.16691 -13.04784 -12.81026 -12.64291 -12.61284 -12.33666 -12.14264 -11.91190 -11.56823 -11.54485 -11.38465 -10.62207 -10.20942 -9.39004 -8.28048 -6.40776 -0.66094 0.07118 1.31757 1.36820 1.41375 1.44276 1.56322 2.19264 2.40252 2.45516 3.00397 3.06510 3.38502 3.70962 3.78751 4.04739 4.17972 4.18818 4.24771 4.38260 4.43853 4.64906 4.68704 4.77023 4.88919 5.06048 5.12660 5.21570 5.42820 5.45435 5.45785 5.71763 6.05536 6.19048 6.54867 6.72286 7.28765 8.84767 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.048370 B = 0.003392 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.727618 B = 8251.597346 C = 8804.565828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.334 6.334 3 C 0.081 3.919 4 C -0.128 4.128 5 C -0.082 4.082 6 C -0.071 4.071 7 C -0.144 4.144 8 C 0.497 3.503 9 O -0.534 6.534 10 O -0.349 6.349 11 C 0.089 3.911 12 C 0.034 3.966 13 C -0.551 4.551 14 H 0.062 0.938 15 C 0.008 3.992 16 N -0.925 5.925 17 Si 0.973 3.027 18 H -0.265 1.265 19 H -0.274 1.274 20 H -0.274 1.274 21 C 0.092 3.908 22 F -0.135 7.135 23 H 0.078 0.922 24 H 0.118 0.882 25 H 0.078 0.922 26 H 0.190 0.810 27 H 0.188 0.812 28 H 0.156 0.844 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.011 0.989 32 H 0.011 0.989 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.899 -9.079 0.052 25.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.249 6.249 3 C 0.035 3.965 4 C -0.146 4.146 5 C -0.100 4.100 6 C -0.089 4.089 7 C -0.146 4.146 8 C 0.343 3.657 9 O -0.426 6.426 10 O -0.265 6.265 11 C 0.016 3.984 12 C -0.003 4.003 13 C -0.589 4.589 14 H 0.081 0.919 15 C -0.191 4.191 16 N -0.564 5.564 17 Si 0.797 3.203 18 H -0.189 1.189 19 H -0.199 1.199 20 H -0.199 1.199 21 C 0.071 3.929 22 F -0.114 7.114 23 H 0.097 0.903 24 H 0.136 0.864 25 H 0.097 0.903 26 H 0.207 0.793 27 H 0.205 0.795 28 H 0.174 0.826 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.541 -9.415 0.051 25.354 hybrid contribution 1.454 -0.222 0.000 1.471 sum -22.088 -9.637 0.051 24.098 Atomic orbital electron populations 1.23553 0.74865 1.06246 1.03409 1.86149 1.24762 1.25240 1.88724 1.18844 0.89006 0.87640 1.01034 1.21919 1.02555 0.89847 1.00329 1.21520 0.92881 0.99331 0.96231 1.21638 0.94992 0.96883 0.95406 1.19039 0.89015 0.94190 1.12335 1.21442 0.89782 0.81700 0.72736 1.90839 1.67313 1.37479 1.46937 1.86533 1.25441 1.31396 1.83165 1.23274 0.73303 1.00700 1.01075 1.18976 0.95241 0.89067 0.97063 1.21386 0.91565 0.93372 1.52586 0.91947 1.25928 1.04301 0.94840 0.94032 1.70089 1.37833 0.98105 1.50327 0.85282 0.78349 0.78600 0.78108 1.18902 1.19927 1.19933 1.17306 0.87548 0.81298 1.06726 1.91512 1.77184 1.49041 1.93640 0.90313 0.86425 0.90306 0.79307 0.79480 0.82632 0.92211 0.92234 0.97069 0.97062 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.33 -6.77 10.36 -93.19 -0.97 -7.74 16 3 C 0.08 1.77 6.69 22.50 0.15 1.92 16 4 C -0.13 -1.63 9.03 22.40 0.20 -1.42 16 5 C -0.08 -1.08 10.02 22.22 0.22 -0.86 16 6 C -0.07 -1.59 9.61 22.54 0.22 -1.37 16 7 C -0.14 -4.51 5.88 -20.07 -0.12 -4.63 16 8 C 0.50 20.08 7.89 70.29 0.55 20.63 16 9 O -0.53 -24.81 15.13 19.88 0.30 -24.51 16 10 O -0.35 -14.79 9.47 -56.38 -0.53 -15.32 16 11 C 0.09 4.21 5.41 71.98 0.39 4.60 16 12 C 0.03 1.82 5.35 29.85 0.16 1.98 16 13 C -0.55 -31.67 9.11 25.60 0.23 -31.44 16 14 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 15 C 0.01 0.47 5.46 84.65 0.46 0.93 16 16 N -0.92 -55.11 13.29 21.45 0.28 -54.82 16 17 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 18 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 C 0.09 2.82 7.30 22.77 0.17 2.99 16 22 F -0.14 -5.10 15.39 44.97 0.69 -4.40 16 23 H 0.08 0.30 7.66 -2.39 -0.02 0.28 16 24 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.08 0.30 7.66 -2.39 -0.02 0.28 16 26 H 0.19 0.65 6.27 -2.91 -0.02 0.63 16 27 H 0.19 0.88 8.06 -2.91 -0.02 0.86 16 28 H 0.16 3.42 7.61 -2.91 -0.02 3.39 16 29 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.06 2.79 8.13 -2.39 -0.02 2.77 16 31 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -76.06 300.06 6.69 -69.37 By element: Atomic # 1 Polarization: -4.26 SS G_CDS: 1.13 Total: -3.13 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 3.75 Total: -5.46 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.28 Total: -54.82 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -1.20 Total: -47.57 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.69 Total: -4.40 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -76.06 6.69 -69.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179171164.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.636 kcal (2) G-P(sol) polarization free energy of solvation -76.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds