Wall clock time and date at job start Mon Mar 30 2020 08:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46597 * 2 1 4 4 H 1.09006 * 109.47552 * 304.99931 * 3 2 1 5 5 C 1.50700 * 109.47000 * 185.00048 * 3 2 1 6 6 H 1.07999 * 120.00315 * 240.00143 * 5 3 2 7 7 C 1.37885 * 120.00035 * 59.99605 * 5 3 2 8 8 N 1.31514 * 119.99918 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00124 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46961 * 60.00503 * 9 7 5 11 11 H 1.48498 * 109.47357 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47294 * 300.00450 * 9 7 5 13 13 O 1.45196 * 109.47258 * 65.00323 * 3 2 1 14 14 C 1.34231 * 116.99766 * 269.99560 * 13 3 2 15 15 O 1.20824 * 120.00199 * 0.02562 * 14 13 3 16 16 C 1.50703 * 120.00026 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.47152 * 300.00054 * 16 14 13 18 18 C 1.53000 * 109.46912 * 60.00282 * 16 14 13 19 19 C 1.50699 * 109.47227 * 180.02562 * 16 14 13 20 20 C 1.33389 * 125.20333 * 119.99691 * 19 16 14 21 21 C 1.38430 * 114.91908 * 179.97438 * 20 19 16 22 22 C 1.33391 * 114.92170 * 0.02562 * 21 20 19 23 23 S 1.75883 * 109.59191 * 359.75290 * 22 21 20 24 24 H 1.09005 * 109.47093 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47201 * 300.00052 * 1 2 3 26 26 H 1.09001 * 109.47236 * 60.00159 * 1 2 3 27 27 H 1.09002 * 109.47178 * 240.00478 * 2 1 3 28 28 H 1.08992 * 109.47437 * 119.99722 * 2 1 3 29 29 H 0.96995 * 120.00363 * 179.97438 * 8 7 5 30 30 H 1.08992 * 109.47399 * 59.99914 * 18 16 14 31 31 H 1.09004 * 109.46724 * 180.02562 * 18 16 14 32 32 H 1.09001 * 109.47194 * 299.99742 * 18 16 14 33 33 H 1.07998 * 122.53790 * 0.02562 * 20 19 16 34 34 H 1.07998 * 122.53607 * 180.02562 * 21 20 19 35 35 H 1.08002 * 125.20096 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9817 -0.8418 5 6 3.5418 1.4445 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0048 0.8815 -1.3819 10 1 6.5975 0.1475 -0.2349 11 1 6.3977 0.2180 -2.6510 12 1 6.4993 2.2817 -1.3822 13 8 1.6558 2.0917 1.2407 14 6 0.4726 2.7254 1.2559 15 8 -0.2194 2.7369 0.2656 16 6 0.0073 3.4226 2.5084 17 1 -0.0713 2.6986 3.3194 18 6 1.0138 4.5096 2.8908 19 6 -1.3409 4.0495 2.2630 20 6 -2.4566 3.7619 2.9352 21 6 -3.5780 4.4667 2.5330 22 6 -3.3732 5.3263 1.5337 23 16 -1.6827 5.2773 1.0508 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8899 29 1 3.8291 -0.0603 -2.9502 30 1 1.0924 5.2336 2.0799 31 1 0.6774 5.0135 3.7970 32 1 1.9887 4.0558 3.0685 33 1 -2.4827 3.0349 3.7334 34 1 -4.5455 4.3309 2.9933 35 1 -4.1291 5.9584 1.0915 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187981951.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:17 Heat of formation + Delta-G solvation = -66.558301 kcal Electronic energy + Delta-G solvation = -18511.043279 eV Core-core repulsion = 15600.654529 eV Total energy + Delta-G solvation = -2910.388750 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.81059 -37.77417 -35.82461 -33.92240 -33.30905 -31.30942 -28.54110 -27.29218 -24.82777 -23.63747 -22.80306 -20.69241 -19.41447 -19.28502 -17.28548 -16.64218 -16.44524 -15.66375 -15.28466 -15.00873 -14.48248 -13.64768 -13.32035 -12.99466 -12.79967 -12.62016 -12.24474 -12.15951 -12.05030 -11.61107 -11.40214 -11.35621 -11.19704 -11.16004 -10.93257 -10.65140 -10.48809 -10.28918 -9.78398 -9.55897 -9.34634 -8.80587 -8.58016 -8.44826 -8.22778 -6.18099 -4.25390 1.09171 1.78832 2.18829 2.79763 3.01144 3.26007 3.29824 3.32033 3.72859 4.33543 4.62210 5.09505 5.13519 5.14523 5.25470 5.49015 5.60457 5.69676 5.86705 5.94223 6.16075 6.23495 6.24512 6.30801 6.37729 6.47392 6.55667 6.88011 6.97994 7.17903 7.26772 7.61867 7.74400 7.95657 8.16373 8.64163 8.89440 9.39793 10.88580 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.032222 B = 0.004976 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.775772 B = 5625.522802 C = 5873.603335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.047 0.953 5 C -0.522 4.522 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 O -0.352 6.352 14 C 0.452 3.548 15 O -0.503 6.503 16 C -0.019 4.019 17 H 0.117 0.883 18 C -0.141 4.141 19 C -0.155 4.155 20 C -0.141 4.141 21 C -0.137 4.137 22 C -0.229 4.229 23 S 0.144 5.856 24 H 0.032 0.968 25 H 0.031 0.969 26 H 0.053 0.947 27 H 0.108 0.892 28 H 0.041 0.959 29 H 0.267 0.733 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.625 7.576 9.599 15.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.560 4.560 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.269 6.269 14 C 0.293 3.707 15 O -0.392 6.392 16 C -0.040 4.040 17 H 0.135 0.865 18 C -0.199 4.199 19 C -0.273 4.273 20 C -0.172 4.172 21 C -0.168 4.168 22 C -0.365 4.365 23 S 0.409 5.591 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.126 0.874 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.919 8.225 7.976 14.520 hybrid contribution -0.137 -0.955 0.755 1.225 sum -9.057 7.271 8.730 14.529 Atomic orbital electron populations 1.21852 0.98352 0.98941 1.00772 1.22018 0.92621 0.99399 1.03316 1.20672 0.94951 0.88736 0.78668 0.93535 1.21000 0.89671 1.39058 1.06245 0.91404 1.24879 0.99178 0.94758 0.95064 1.69879 1.35464 1.37765 1.09445 0.86351 0.83942 0.78479 0.77471 1.19940 1.21044 1.20001 1.86457 1.33900 1.62374 1.44144 1.23006 0.81089 0.77370 0.89209 1.90640 1.55223 1.57890 1.35485 1.19454 0.90586 0.97841 0.96095 0.86499 1.21806 0.98814 0.97266 1.01979 1.24021 0.98164 1.03497 1.01663 1.20037 0.91391 1.02829 1.02911 1.20031 0.99631 0.98367 0.98766 1.25690 1.00288 1.06805 1.03686 1.84397 1.02827 1.36079 1.35767 0.94887 0.94985 0.92819 0.87365 0.94019 0.92339 0.92046 0.91251 0.90027 0.84503 0.84675 0.82239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.56 37.16 0.32 -2.84 16 2 C -0.14 -3.38 5.49 -26.73 -0.15 -3.52 16 3 C 0.22 5.87 2.25 -27.88 -0.06 5.81 16 4 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -14.48 8.90 -34.44 -0.31 -14.79 16 6 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.03 11.29 55.43 0.63 -24.40 16 9 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 O -0.35 -8.22 9.71 -39.26 -0.38 -8.60 16 14 C 0.45 9.29 5.68 36.01 0.20 9.50 16 15 O -0.50 -11.53 12.41 -18.75 -0.23 -11.77 16 16 C -0.02 -0.29 3.20 -92.92 -0.30 -0.58 16 17 H 0.12 1.54 8.08 -51.93 -0.42 1.12 16 18 C -0.14 -1.87 9.05 37.16 0.34 -1.53 16 19 C -0.16 -2.30 4.60 -36.00 -0.17 -2.47 16 20 C -0.14 -1.83 10.01 -41.21 -0.41 -2.24 16 21 C -0.14 -1.62 10.18 -41.20 -0.42 -2.04 16 22 C -0.23 -2.78 11.23 29.04 0.33 -2.45 16 23 S 0.14 2.10 22.19 -107.50 -2.39 -0.28 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.03 0.68 6.06 -51.93 -0.31 0.37 16 26 H 0.05 1.26 7.80 -51.93 -0.40 0.85 16 27 H 0.11 2.92 5.95 -51.93 -0.31 2.62 16 28 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.06 0.85 7.99 -51.93 -0.42 0.44 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 33 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 306.78 15.07 4.62 4.62 Total: -1.00 -30.14 306.78 -8.23 -38.36 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -4.74 Total: 1.69 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -0.72 Total: -15.53 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.63 Total: -24.40 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.61 Total: -20.37 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.39 Total: -0.28 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.14 -8.23 -38.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187981951.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.193 kcal (2) G-P(sol) polarization free energy of solvation -30.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds