Wall clock time and date at job start Mon Mar 30 2020 08:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46597 * 2 1 4 4 H 1.09006 * 109.47552 * 304.99931 * 3 2 1 5 5 C 1.50700 * 109.47000 * 185.00048 * 3 2 1 6 6 H 1.07999 * 120.00315 * 240.00143 * 5 3 2 7 7 C 1.37885 * 120.00035 * 59.99605 * 5 3 2 8 8 N 1.31514 * 119.99918 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00124 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46961 * 60.00503 * 9 7 5 11 11 H 1.48498 * 109.47357 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47294 * 300.00450 * 9 7 5 13 13 O 1.45196 * 109.47258 * 65.00323 * 3 2 1 14 14 C 1.34231 * 116.99766 * 269.99560 * 13 3 2 15 15 O 1.20824 * 120.00199 * 0.02562 * 14 13 3 16 16 C 1.50703 * 120.00026 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.47152 * 300.00054 * 16 14 13 18 18 C 1.53000 * 109.46912 * 60.00282 * 16 14 13 19 19 C 1.50699 * 109.47227 * 180.02562 * 16 14 13 20 20 C 1.33389 * 125.20333 * 119.99691 * 19 16 14 21 21 C 1.38430 * 114.91908 * 179.97438 * 20 19 16 22 22 C 1.33391 * 114.92170 * 0.02562 * 21 20 19 23 23 S 1.75883 * 109.59191 * 359.75290 * 22 21 20 24 24 H 1.09005 * 109.47093 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47201 * 300.00052 * 1 2 3 26 26 H 1.09001 * 109.47236 * 60.00159 * 1 2 3 27 27 H 1.09002 * 109.47178 * 240.00478 * 2 1 3 28 28 H 1.08992 * 109.47437 * 119.99722 * 2 1 3 29 29 H 0.96995 * 120.00363 * 179.97438 * 8 7 5 30 30 H 1.08992 * 109.47399 * 59.99914 * 18 16 14 31 31 H 1.09004 * 109.46724 * 180.02562 * 18 16 14 32 32 H 1.09001 * 109.47194 * 299.99742 * 18 16 14 33 33 H 1.07998 * 122.53790 * 0.02562 * 20 19 16 34 34 H 1.07998 * 122.53607 * 180.02562 * 21 20 19 35 35 H 1.08002 * 125.20096 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9817 -0.8418 5 6 3.5418 1.4445 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0048 0.8815 -1.3819 10 1 6.5975 0.1475 -0.2349 11 1 6.3977 0.2180 -2.6510 12 1 6.4993 2.2817 -1.3822 13 8 1.6558 2.0917 1.2407 14 6 0.4726 2.7254 1.2559 15 8 -0.2194 2.7369 0.2656 16 6 0.0073 3.4226 2.5084 17 1 -0.0713 2.6986 3.3194 18 6 1.0138 4.5096 2.8908 19 6 -1.3409 4.0495 2.2630 20 6 -2.4566 3.7619 2.9352 21 6 -3.5780 4.4667 2.5330 22 6 -3.3732 5.3263 1.5337 23 16 -1.6827 5.2773 1.0508 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8899 29 1 3.8291 -0.0603 -2.9502 30 1 1.0924 5.2336 2.0799 31 1 0.6774 5.0135 3.7970 32 1 1.9887 4.0558 3.0685 33 1 -2.4827 3.0349 3.7334 34 1 -4.5455 4.3309 2.9933 35 1 -4.1291 5.9584 1.0915 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187981951.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:17 Heat of formation + Delta-G solvation = -82.255999 kcal Electronic energy + Delta-G solvation = -18511.723983 eV Core-core repulsion = 15600.654529 eV Total energy + Delta-G solvation = -2911.069453 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.48657 -38.88506 -37.57058 -35.58069 -34.88575 -33.28646 -29.64787 -29.22679 -26.12955 -25.25027 -24.29013 -22.35399 -21.20014 -20.28350 -18.99111 -18.32032 -17.97677 -17.26819 -16.83822 -16.37108 -16.20021 -15.07833 -14.82164 -14.68421 -14.09973 -13.80660 -13.61362 -13.55649 -13.34857 -13.20357 -13.09042 -12.98599 -12.81407 -12.60190 -12.52741 -12.44426 -12.14887 -11.76417 -11.53230 -11.43293 -11.12917 -10.81332 -10.51729 -9.60750 -9.32001 -8.26743 -6.43693 0.06932 0.75494 1.18482 1.38947 1.42129 1.45253 1.53238 1.78645 2.17125 2.45099 3.02896 3.47817 3.91135 4.04615 4.20879 4.27734 4.36546 4.39047 4.55614 4.65328 4.71378 4.79696 4.83369 4.85232 5.07564 5.15689 5.21204 5.22510 5.37239 5.39999 5.51847 5.62522 5.67657 5.99045 6.14992 6.61441 7.01953 7.28337 8.79746 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.032222 B = 0.004976 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.775772 B = 5625.522802 C = 5873.603335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.129 4.129 3 C 0.227 3.773 4 H 0.004 0.996 5 C -0.550 4.550 6 H 0.066 0.934 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.979 3.021 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.269 1.269 13 O -0.359 6.359 14 C 0.444 3.556 15 O -0.530 6.530 16 C -0.009 4.009 17 H 0.145 0.855 18 C -0.137 4.137 19 C -0.180 4.180 20 C -0.130 4.130 21 C -0.140 4.140 22 C -0.215 4.215 23 S 0.077 5.923 24 H 0.060 0.940 25 H 0.037 0.963 26 H 0.032 0.968 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.270 0.730 30 H 0.046 0.954 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.163 0.837 34 H 0.169 0.831 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.346 7.551 11.524 17.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.167 4.167 3 C 0.173 3.827 4 H 0.021 0.979 5 C -0.587 4.587 6 H 0.085 0.915 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.803 3.197 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.194 1.194 13 O -0.276 6.276 14 C 0.287 3.713 15 O -0.420 6.420 16 C -0.029 4.029 17 H 0.162 0.838 18 C -0.194 4.194 19 C -0.298 4.298 20 C -0.160 4.160 21 C -0.171 4.171 22 C -0.351 4.351 23 S 0.342 5.658 24 H 0.079 0.921 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.121 0.879 32 H 0.095 0.905 33 H 0.180 0.820 34 H 0.187 0.813 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -9.657 8.210 9.920 16.095 hybrid contribution -0.052 -0.902 0.169 0.920 sum -9.708 7.308 10.089 15.794 Atomic orbital electron populations 1.21691 0.96329 1.00459 1.00014 1.21859 0.94371 0.98178 1.02302 1.20330 0.94459 0.89194 0.78672 0.97854 1.21308 0.90544 1.39953 1.06906 0.91547 1.25791 1.04151 0.93880 0.94355 1.70010 1.37500 1.37957 1.09836 0.85286 0.77803 0.78759 0.77895 1.18780 1.20317 1.19436 1.86447 1.35792 1.62986 1.42378 1.24167 0.79698 0.76517 0.90887 1.90624 1.55646 1.58651 1.37118 1.19551 0.91392 0.98390 0.93602 0.83794 1.21814 0.98179 0.96502 1.02915 1.23994 0.98492 1.04537 1.02740 1.20458 0.90810 1.02279 1.02499 1.20431 1.00688 0.97537 0.98406 1.26011 0.98681 1.06997 1.03399 1.84636 1.06082 1.37511 1.37598 0.92102 0.94388 0.94843 0.89686 0.93485 0.92087 0.93438 0.87896 0.90539 0.81969 0.81345 0.79658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.69 8.56 71.98 0.62 -5.08 16 2 C -0.13 -6.56 5.49 30.59 0.17 -6.39 16 3 C 0.23 12.42 2.25 29.85 0.07 12.49 16 4 H 0.00 0.23 7.16 -2.38 -0.02 0.21 16 5 C -0.55 -31.26 8.90 25.60 0.23 -31.03 16 6 H 0.07 3.69 7.81 -2.91 -0.02 3.66 16 7 C 0.02 1.00 5.29 84.66 0.45 1.44 16 8 N -0.92 -52.78 11.29 21.45 0.24 -52.54 16 9 Si 0.98 42.96 29.54 68.60 2.03 44.99 16 10 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 O -0.36 -17.15 9.71 -51.42 -0.50 -17.65 16 14 C 0.44 18.52 5.68 71.24 0.40 18.92 16 15 O -0.53 -25.09 12.41 21.97 0.27 -24.82 16 16 C -0.01 -0.26 3.20 -12.29 -0.04 -0.30 16 17 H 0.14 3.43 8.08 -2.39 -0.02 3.41 16 18 C -0.14 -3.49 9.05 71.98 0.65 -2.84 16 19 C -0.18 -5.09 4.60 24.59 0.11 -4.97 16 20 C -0.13 -2.96 10.01 21.22 0.21 -2.75 16 21 C -0.14 -2.84 10.18 21.22 0.22 -2.63 16 22 C -0.22 -4.75 11.23 66.72 0.75 -4.00 16 23 S 0.08 2.25 22.19 -56.49 -1.25 0.99 16 24 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 25 H 0.04 1.61 6.06 -2.39 -0.01 1.60 16 26 H 0.03 1.59 7.80 -2.39 -0.02 1.57 16 27 H 0.08 4.73 5.95 -2.39 -0.01 4.72 16 28 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 30 H 0.05 1.33 7.99 -2.39 -0.02 1.31 16 31 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.08 2.01 8.11 -2.39 -0.02 1.99 16 33 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 34 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 35 H 0.19 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -67.25 306.78 5.70 -61.55 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 1.08 Total: 14.60 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: 3.83 Total: -27.13 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 0.24 Total: -52.54 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -0.23 Total: -42.47 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.25 Total: 0.99 kcal Total: -67.25 5.70 -61.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187981951.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.701 kcal (2) G-P(sol) polarization free energy of solvation -67.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds