Wall clock time and date at job start Mon Mar 30 2020 08:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46707 * 2 1 4 4 H 1.08996 * 109.47338 * 55.00166 * 3 2 1 5 5 C 1.50701 * 109.46741 * 174.99581 * 3 2 1 6 6 H 1.08006 * 119.99817 * 119.99773 * 5 3 2 7 7 C 1.37874 * 120.00462 * 299.99669 * 5 3 2 8 8 N 1.31515 * 119.99633 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00341 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46906 * 60.00442 * 9 7 5 11 11 H 1.48500 * 109.47270 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47589 * 300.00565 * 9 7 5 13 13 O 1.45198 * 109.47083 * 294.99585 * 3 2 1 14 14 C 1.34221 * 116.99903 * 90.00229 * 13 3 2 15 15 O 1.20826 * 120.00367 * 359.97438 * 14 13 3 16 16 C 1.50706 * 120.00092 * 180.02562 * 14 13 3 17 17 H 1.09000 * 109.47318 * 59.99266 * 16 14 13 18 18 C 1.53002 * 109.46925 * 300.00032 * 16 14 13 19 19 C 1.50698 * 109.47294 * 180.02562 * 16 14 13 20 20 C 1.33389 * 125.19952 * 239.71839 * 19 16 14 21 21 C 1.38421 * 114.91917 * 179.85656 * 20 19 16 22 22 C 1.33395 * 114.92206 * 0.42946 * 21 20 19 23 23 S 1.75881 * 109.59123 * 359.76937 * 22 21 20 24 24 H 1.08997 * 109.47167 * 60.00482 * 1 2 3 25 25 H 1.09006 * 109.46459 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47559 * 300.00169 * 1 2 3 27 27 H 1.08999 * 109.47559 * 239.99831 * 2 1 3 28 28 H 1.09007 * 109.47146 * 119.99511 * 2 1 3 29 29 H 0.97010 * 120.00060 * 179.97438 * 8 7 5 30 30 H 1.08992 * 109.47060 * 179.97438 * 18 16 14 31 31 H 1.09004 * 109.46930 * 299.99901 * 18 16 14 32 32 H 1.09004 * 109.47059 * 59.99503 * 18 16 14 33 33 H 1.08000 * 122.54086 * 0.02562 * 20 19 16 34 34 H 1.08005 * 122.54391 * 180.19942 * 21 20 19 35 35 H 1.07993 * 125.20361 * 179.74735 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1432 0.8786 1.2281 8 7 3.4061 0.3369 2.1730 9 14 6.0049 0.8803 1.3813 10 1 6.5003 2.2802 1.3810 11 1 6.3977 0.2160 2.6501 12 1 6.5967 0.1455 0.2346 13 8 1.6558 2.0917 -1.2407 14 6 0.4727 2.7253 -1.2560 15 8 -0.2194 2.7369 -0.2657 16 6 0.0069 3.4215 -2.5089 17 1 -0.0719 2.6969 -3.3193 18 6 1.0132 4.5082 -2.8927 19 6 -1.3407 4.0497 -2.2631 20 6 -2.4558 3.7660 -2.9378 21 6 -3.5775 4.4684 -2.5323 22 6 -3.3714 5.3291 -1.5342 23 16 -1.6820 5.2744 -1.0478 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8291 -0.0616 2.9497 30 1 0.6766 5.0114 -3.7990 31 1 1.0921 5.2329 -2.0822 32 1 1.9882 4.0542 -3.0702 33 1 -2.4822 3.0411 -3.7379 34 1 -4.5455 4.3328 -2.9917 35 1 -4.1262 5.9628 -1.0927 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187981973.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:20 Heat of formation + Delta-G solvation = -66.538926 kcal Electronic energy + Delta-G solvation = -18511.249437 eV Core-core repulsion = 15600.861528 eV Total energy + Delta-G solvation = -2910.387910 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.81156 -37.77481 -35.82537 -33.92258 -33.30984 -31.30949 -28.53961 -27.29227 -24.82763 -23.63777 -22.80337 -20.69255 -19.41479 -19.28514 -17.28559 -16.64169 -16.44583 -15.66416 -15.28264 -15.00916 -14.48252 -13.65003 -13.32028 -12.99506 -12.79989 -12.61803 -12.24276 -12.15910 -12.05146 -11.61212 -11.40138 -11.35721 -11.19635 -11.16051 -10.93250 -10.65199 -10.48759 -10.28940 -9.78404 -9.55920 -9.34668 -8.80598 -8.57949 -8.44854 -8.22713 -6.18125 -4.25430 1.09230 1.78881 2.18894 2.79804 3.01100 3.25993 3.29811 3.32022 3.72778 4.33510 4.62271 5.09576 5.13526 5.14570 5.25495 5.49021 5.60469 5.69702 5.86731 5.94212 6.16120 6.23497 6.24521 6.30795 6.37763 6.47382 6.55701 6.87991 6.97976 7.17875 7.26738 7.61804 7.74374 7.95617 8.16336 8.64097 8.89378 9.39791 10.88521 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.032229 B = 0.004976 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.582294 B = 5625.504375 C = 5872.759958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.047 0.953 5 C -0.522 4.522 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.352 6.352 14 C 0.452 3.548 15 O -0.504 6.504 16 C -0.019 4.019 17 H 0.117 0.883 18 C -0.141 4.141 19 C -0.156 4.156 20 C -0.141 4.141 21 C -0.137 4.137 22 C -0.229 4.229 23 S 0.144 5.856 24 H 0.031 0.969 25 H 0.032 0.968 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.108 0.892 29 H 0.267 0.733 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.621 7.577 -9.594 15.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.560 4.560 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.269 6.269 14 C 0.293 3.707 15 O -0.392 6.392 16 C -0.040 4.040 17 H 0.135 0.865 18 C -0.199 4.199 19 C -0.274 4.274 20 C -0.172 4.172 21 C -0.168 4.168 22 C -0.365 4.365 23 S 0.410 5.590 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.126 0.874 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.915 8.219 -7.967 14.509 hybrid contribution -0.137 -0.950 -0.759 1.224 sum -9.052 7.269 -8.726 14.523 Atomic orbital electron populations 1.21851 0.98353 0.98941 1.00771 1.22020 0.92620 0.99398 1.03319 1.20672 0.94953 0.88736 0.78666 0.93534 1.20999 0.89671 1.39073 1.06229 0.91405 1.24877 0.99181 0.94761 0.95062 1.69884 1.35460 1.37727 1.09483 0.86351 0.83939 0.78479 0.77472 1.19994 1.21042 1.19945 1.86455 1.33902 1.62367 1.44145 1.23005 0.81089 0.77366 0.89213 1.90641 1.55226 1.57881 1.35499 1.19455 0.90594 0.97843 0.96084 0.86493 1.21808 0.98813 0.97271 1.01976 1.24021 0.98181 1.03580 1.01571 1.20034 0.91383 1.02876 1.02883 1.20030 0.99616 0.98354 0.98791 1.25691 1.00314 1.06757 1.03733 1.84399 1.02955 1.36172 1.35499 0.94986 0.94887 0.92818 0.94020 0.87361 0.92342 0.91251 0.92045 0.90032 0.84504 0.84677 0.82242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.56 37.16 0.32 -2.84 16 2 C -0.14 -3.38 5.49 -26.73 -0.15 -3.52 16 3 C 0.22 5.87 2.25 -27.88 -0.06 5.81 16 4 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -14.48 8.90 -34.44 -0.31 -14.79 16 6 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.03 11.29 55.43 0.63 -24.40 16 9 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 13 O -0.35 -8.22 9.71 -39.23 -0.38 -8.60 16 14 C 0.45 9.29 5.68 36.01 0.20 9.50 16 15 O -0.50 -11.53 12.40 -18.75 -0.23 -11.76 16 16 C -0.02 -0.29 3.21 -92.92 -0.30 -0.58 16 17 H 0.12 1.54 8.09 -51.93 -0.42 1.12 16 18 C -0.14 -1.87 9.05 37.16 0.34 -1.54 16 19 C -0.16 -2.31 4.60 -36.00 -0.17 -2.47 16 20 C -0.14 -1.83 10.01 -41.21 -0.41 -2.24 16 21 C -0.14 -1.62 10.18 -41.21 -0.42 -2.04 16 22 C -0.23 -2.78 11.23 29.04 0.33 -2.45 16 23 S 0.14 2.11 22.18 -107.50 -2.38 -0.27 16 24 H 0.03 0.68 6.06 -51.93 -0.31 0.37 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 1.26 7.80 -51.93 -0.40 0.85 16 27 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.11 2.93 5.95 -51.93 -0.31 2.62 16 29 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.85 8.00 -51.93 -0.42 0.44 16 32 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 33 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 306.77 15.07 4.62 4.62 Total: -1.00 -30.13 306.77 -8.23 -38.36 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -4.74 Total: 1.69 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -0.72 Total: -15.54 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.63 Total: -24.40 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.61 Total: -20.37 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.38 Total: -0.27 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.13 -8.23 -38.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187981973.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.181 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds