Wall clock time and date at job start Mon Mar 30 2020 08:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 O 1.45208 * 109.47166 * 65.00081 * 3 2 1 14 14 C 1.34225 * 116.99941 * 270.00274 * 13 3 2 15 15 O 1.20837 * 119.99963 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00256 * 179.97438 * 14 13 3 17 17 H 1.09006 * 109.46931 * 60.00018 * 16 14 13 18 18 C 1.53001 * 109.46936 * 300.00308 * 16 14 13 19 19 C 1.50701 * 109.47100 * 179.97438 * 16 14 13 20 20 C 1.33394 * 125.19980 * 239.71832 * 19 16 14 21 21 C 1.38419 * 114.91624 * 179.86393 * 20 19 16 22 22 C 1.33386 * 114.92682 * 0.42949 * 21 20 19 23 23 S 1.75879 * 125.20420 * 60.02811 * 19 16 14 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.47134 * 299.99097 * 18 16 14 31 31 H 1.08997 * 109.47320 * 59.99749 * 18 16 14 32 32 H 1.09005 * 109.46916 * 179.97438 * 18 16 14 33 33 H 1.08000 * 122.53936 * 0.02562 * 20 19 16 34 34 H 1.08008 * 122.53873 * 180.19986 * 21 20 19 35 35 H 1.07995 * 125.21043 * 179.75263 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 8 1.6560 2.0916 1.2408 14 6 0.4728 2.7254 1.2561 15 8 -0.2188 2.7377 0.2653 16 6 0.0071 3.4216 2.5088 17 1 0.7241 4.1958 2.7822 18 6 -0.1037 2.4045 3.6464 19 6 -1.3405 4.0499 2.2629 20 6 -1.6132 5.3512 2.3699 21 6 -2.9244 5.6971 2.0921 22 6 -3.7186 4.6756 1.7682 23 16 -2.7959 3.1785 1.7983 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8292 -0.0604 -2.9503 30 1 -0.8208 1.6303 3.3730 31 1 0.8711 1.9504 3.8240 32 1 -0.4402 2.9081 4.5526 33 1 -0.8669 6.0801 2.6495 34 1 -3.2785 6.7164 2.1379 35 1 -4.7678 4.7554 1.5249 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187981996.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:22 Heat of formation + Delta-G solvation = -66.593369 kcal Electronic energy + Delta-G solvation = -18546.829388 eV Core-core repulsion = 15636.439117 eV Total energy + Delta-G solvation = -2910.390270 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.81452 -37.77585 -35.81911 -33.90956 -33.32617 -31.32319 -28.56590 -27.25748 -24.84340 -23.63616 -22.82682 -20.68963 -19.40413 -19.28956 -17.27970 -16.70365 -16.41685 -15.55569 -15.31629 -15.11751 -14.44618 -13.70943 -13.09764 -13.04038 -12.84364 -12.61287 -12.55001 -12.15116 -11.80333 -11.59009 -11.50755 -11.38817 -11.19164 -11.14254 -10.96768 -10.62879 -10.49510 -10.28237 -9.79126 -9.55609 -9.33964 -8.80405 -8.57959 -8.45000 -8.23364 -6.18435 -4.25581 1.08962 1.78497 2.18220 2.79878 3.01280 3.24289 3.29973 3.33594 3.72738 4.33613 4.61849 5.08638 5.12785 5.14359 5.24729 5.49023 5.60648 5.69520 5.85150 5.92269 6.15218 6.20664 6.24041 6.30887 6.37590 6.47008 6.55722 6.87719 6.97722 7.17701 7.26705 7.61982 7.74393 7.95615 8.16246 8.64162 8.89578 9.39719 10.88300 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.033871 B = 0.004919 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.464033 B = 5691.203168 C = 5901.708995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.047 0.953 5 C -0.521 4.521 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.352 6.352 14 C 0.452 3.548 15 O -0.504 6.504 16 C -0.019 4.019 17 H 0.118 0.882 18 C -0.141 4.141 19 C -0.155 4.155 20 C -0.141 4.141 21 C -0.136 4.136 22 C -0.229 4.229 23 S 0.143 5.857 24 H 0.053 0.947 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.041 0.959 28 H 0.108 0.892 29 H 0.266 0.734 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.419 6.111 10.151 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.559 4.559 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.269 6.269 14 C 0.293 3.707 15 O -0.393 6.393 16 C -0.040 4.040 17 H 0.136 0.864 18 C -0.198 4.198 19 C -0.273 4.273 20 C -0.171 4.171 21 C -0.167 4.167 22 C -0.365 4.365 23 S 0.408 5.592 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.126 0.874 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.936 4.459 9.351 15.064 hybrid contribution 1.172 1.503 -0.133 1.910 sum -9.764 5.961 9.218 14.692 Atomic orbital electron populations 1.21854 0.98347 0.98952 1.00761 1.22010 0.92635 0.99347 1.03311 1.20680 0.94965 0.88758 0.78674 0.93536 1.21043 0.89697 1.38957 1.06228 0.91360 1.24883 0.99192 0.94783 0.95055 1.69894 1.35355 1.37843 1.09463 0.86294 0.83957 0.78667 0.77346 1.20354 1.20980 1.19644 1.86458 1.33932 1.62363 1.44118 1.23003 0.81210 0.77262 0.89189 1.90644 1.55286 1.57932 1.35394 1.19456 0.92286 0.98740 0.93535 0.86371 1.21806 1.03870 0.97851 0.96301 1.24019 0.98160 0.97146 1.08013 1.20049 0.97378 0.94790 1.04925 1.20033 0.93267 0.99913 1.03530 1.25686 1.03798 0.96625 1.10375 1.84357 0.99471 1.09268 1.66123 0.92795 0.95000 0.94858 0.94021 0.87379 0.92400 0.92143 0.90104 0.91203 0.84442 0.84652 0.82242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.57 37.16 0.32 -2.79 16 2 C -0.14 -3.34 5.49 -26.74 -0.15 -3.49 16 3 C 0.22 5.86 2.25 -27.89 -0.06 5.79 16 4 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -14.51 8.90 -34.44 -0.31 -14.82 16 6 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.05 11.30 55.43 0.63 -24.43 16 9 Si 0.91 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 13 O -0.35 -8.22 9.71 -39.24 -0.38 -8.60 16 14 C 0.45 9.29 5.68 36.01 0.20 9.50 16 15 O -0.50 -11.54 12.40 -18.76 -0.23 -11.77 16 16 C -0.02 -0.29 3.20 -92.92 -0.30 -0.59 16 17 H 0.12 1.58 8.08 -51.93 -0.42 1.16 16 18 C -0.14 -1.83 9.05 37.16 0.34 -1.49 16 19 C -0.16 -2.30 4.60 -36.00 -0.17 -2.47 16 20 C -0.14 -1.84 10.01 -41.21 -0.41 -2.25 16 21 C -0.14 -1.62 10.18 -41.21 -0.42 -2.04 16 22 C -0.23 -2.77 11.23 29.04 0.33 -2.45 16 23 S 0.14 2.06 22.18 -107.50 -2.38 -0.33 16 24 H 0.05 1.25 7.80 -51.93 -0.40 0.84 16 25 H 0.03 0.66 6.06 -51.93 -0.31 0.35 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.11 2.91 5.95 -51.93 -0.31 2.60 16 29 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.06 0.81 8.00 -51.93 -0.42 0.39 16 31 H 0.08 1.06 8.11 -51.93 -0.42 0.64 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 35 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 306.78 15.07 4.62 4.62 Total: -1.00 -30.23 306.78 -8.23 -38.46 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.74 Total: 1.56 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -0.72 Total: -15.46 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 0.63 Total: -24.43 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.61 Total: -20.37 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.38 Total: -0.33 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.23 -8.23 -38.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187981996.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.135 kcal (2) G-P(sol) polarization free energy of solvation -30.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds