Wall clock time and date at job start Mon Mar 30 2020 08:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 O 1.45208 * 109.47166 * 65.00081 * 3 2 1 14 14 C 1.34225 * 116.99941 * 270.00274 * 13 3 2 15 15 O 1.20837 * 119.99963 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00256 * 179.97438 * 14 13 3 17 17 H 1.09006 * 109.46931 * 60.00018 * 16 14 13 18 18 C 1.53001 * 109.46936 * 300.00308 * 16 14 13 19 19 C 1.50701 * 109.47100 * 179.97438 * 16 14 13 20 20 C 1.33394 * 125.19980 * 239.71832 * 19 16 14 21 21 C 1.38419 * 114.91624 * 179.86393 * 20 19 16 22 22 C 1.33386 * 114.92682 * 0.42949 * 21 20 19 23 23 S 1.75879 * 125.20420 * 60.02811 * 19 16 14 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.47134 * 299.99097 * 18 16 14 31 31 H 1.08997 * 109.47320 * 59.99749 * 18 16 14 32 32 H 1.09005 * 109.46916 * 179.97438 * 18 16 14 33 33 H 1.08000 * 122.53936 * 0.02562 * 20 19 16 34 34 H 1.08008 * 122.53873 * 180.19986 * 21 20 19 35 35 H 1.07995 * 125.21043 * 179.75263 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 8 1.6560 2.0916 1.2408 14 6 0.4728 2.7254 1.2561 15 8 -0.2188 2.7377 0.2653 16 6 0.0071 3.4216 2.5088 17 1 0.7241 4.1958 2.7822 18 6 -0.1037 2.4045 3.6464 19 6 -1.3405 4.0499 2.2629 20 6 -1.6132 5.3512 2.3699 21 6 -2.9244 5.6971 2.0921 22 6 -3.7186 4.6756 1.7682 23 16 -2.7959 3.1785 1.7983 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8292 -0.0604 -2.9503 30 1 -0.8208 1.6303 3.3730 31 1 0.8711 1.9504 3.8240 32 1 -0.4402 2.9081 4.5526 33 1 -0.8669 6.0801 2.6495 34 1 -3.2785 6.7164 2.1379 35 1 -4.7678 4.7554 1.5249 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187981996.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:22 Heat of formation + Delta-G solvation = -82.336386 kcal Electronic energy + Delta-G solvation = -18547.512056 eV Core-core repulsion = 15636.439117 eV Total energy + Delta-G solvation = -2911.072939 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.49028 -38.88603 -37.56705 -35.57005 -34.88700 -33.30438 -29.68372 -29.17486 -26.11436 -25.27032 -24.30063 -22.34986 -21.18490 -20.29588 -18.97388 -18.37952 -17.96138 -17.12841 -16.94207 -16.41992 -16.18916 -14.98884 -14.78960 -14.70998 -14.19423 -13.90001 -13.57255 -13.45191 -13.35118 -13.15310 -13.08875 -13.06130 -12.79506 -12.63148 -12.57170 -12.39244 -12.14280 -11.76412 -11.54083 -11.41317 -11.12843 -10.82042 -10.51674 -9.60727 -9.30661 -8.27162 -6.44071 0.06738 0.75779 1.17999 1.38819 1.42116 1.43688 1.54650 1.78345 2.16881 2.45026 3.02521 3.47961 3.89549 4.05561 4.22410 4.28440 4.36451 4.39070 4.55115 4.65373 4.71129 4.80007 4.83497 4.85453 5.08280 5.15533 5.21490 5.22702 5.37362 5.40381 5.51877 5.61819 5.67611 5.98995 6.14783 6.61384 7.01826 7.28120 8.79547 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.033871 B = 0.004919 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.464033 B = 5691.203168 C = 5901.708995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.128 4.128 3 C 0.226 3.774 4 H 0.004 0.996 5 C -0.549 4.549 6 H 0.066 0.934 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.980 3.020 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.265 1.265 13 O -0.359 6.359 14 C 0.444 3.556 15 O -0.531 6.531 16 C -0.010 4.010 17 H 0.141 0.859 18 C -0.136 4.136 19 C -0.181 4.181 20 C -0.133 4.133 21 C -0.141 4.141 22 C -0.217 4.217 23 S 0.087 5.913 24 H 0.033 0.967 25 H 0.037 0.963 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.085 0.915 29 H 0.270 0.730 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.160 0.840 34 H 0.168 0.832 35 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.458 7.305 11.533 17.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.166 4.166 3 C 0.173 3.827 4 H 0.022 0.978 5 C -0.587 4.587 6 H 0.084 0.916 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.803 3.197 10 H -0.192 1.192 11 H -0.204 1.204 12 H -0.190 1.190 13 O -0.276 6.276 14 C 0.288 3.712 15 O -0.421 6.421 16 C -0.030 4.030 17 H 0.158 0.842 18 C -0.193 4.193 19 C -0.299 4.299 20 C -0.163 4.163 21 C -0.172 4.172 22 C -0.352 4.352 23 S 0.352 5.648 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.120 0.880 33 H 0.178 0.822 34 H 0.185 0.815 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -10.994 5.659 10.752 16.386 hybrid contribution 1.076 1.227 -0.572 1.730 sum -9.918 6.886 10.180 15.793 Atomic orbital electron populations 1.21691 0.96322 1.00429 1.00031 1.21847 0.94365 0.98149 1.02255 1.20338 0.94457 0.89217 0.78676 0.97801 1.21339 0.90555 1.39903 1.06876 0.91564 1.25797 1.04175 0.93891 0.94347 1.70022 1.37422 1.38004 1.09871 0.85225 0.77785 0.79135 0.77533 1.19198 1.20408 1.18975 1.86448 1.35783 1.62996 1.42375 1.24161 0.79792 0.76468 0.90821 1.90627 1.55626 1.58766 1.37040 1.19552 0.93147 0.99244 0.91099 0.84158 1.21817 1.03535 0.97356 0.96594 1.24013 0.97584 0.97848 1.10451 1.20456 0.98507 0.94389 1.02991 1.20414 0.92674 1.01353 1.02724 1.26023 1.04876 0.94971 1.09357 1.84525 1.01003 1.11874 1.67446 0.94764 0.94427 0.92162 0.93551 0.89704 0.92091 0.93062 0.90462 0.88001 0.82212 0.81469 0.79611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.69 8.57 71.98 0.62 -5.07 16 2 C -0.13 -6.52 5.49 30.59 0.17 -6.35 16 3 C 0.23 12.40 2.25 29.85 0.07 12.47 16 4 H 0.00 0.26 7.16 -2.39 -0.02 0.24 16 5 C -0.55 -31.24 8.90 25.60 0.23 -31.02 16 6 H 0.07 3.69 7.81 -2.91 -0.02 3.66 16 7 C 0.02 0.97 5.29 84.65 0.45 1.42 16 8 N -0.92 -52.75 11.30 21.45 0.24 -52.51 16 9 Si 0.98 42.95 29.54 68.60 2.03 44.98 16 10 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 11 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 13 O -0.36 -17.15 9.71 -51.37 -0.50 -17.65 16 14 C 0.44 18.53 5.68 71.24 0.40 18.93 16 15 O -0.53 -25.07 12.40 21.93 0.27 -24.80 16 16 C -0.01 -0.29 3.20 -12.29 -0.04 -0.33 16 17 H 0.14 3.48 8.08 -2.38 -0.02 3.46 16 18 C -0.14 -3.33 9.05 71.98 0.65 -2.68 16 19 C -0.18 -5.13 4.60 24.59 0.11 -5.02 16 20 C -0.13 -3.11 10.01 21.22 0.21 -2.90 16 21 C -0.14 -2.91 10.18 21.21 0.22 -2.70 16 22 C -0.22 -4.75 11.23 66.72 0.75 -4.00 16 23 S 0.09 2.47 22.18 -56.49 -1.25 1.21 16 24 H 0.03 1.63 7.80 -2.39 -0.02 1.61 16 25 H 0.04 1.60 6.06 -2.39 -0.01 1.59 16 26 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 27 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.08 4.72 5.95 -2.39 -0.01 4.71 16 29 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 30 H 0.05 1.34 8.00 -2.39 -0.02 1.33 16 31 H 0.08 1.94 8.11 -2.39 -0.02 1.92 16 32 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 35 H 0.19 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -67.10 306.78 5.70 -61.40 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 1.08 Total: 14.62 kcal Atomic # 6 Polarization: -31.08 SS G_CDS: 3.83 Total: -27.25 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.24 Total: -52.51 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -0.23 Total: -42.45 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -1.25 Total: 1.21 kcal Total: -67.10 5.70 -61.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187981996.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.940 kcal (2) G-P(sol) polarization free energy of solvation -67.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds