Wall clock time and date at job start Mon Mar 30 2020 08:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47124 * 2 1 4 4 H 1.09005 * 109.47537 * 304.99887 * 3 2 1 5 5 C 1.50702 * 109.47416 * 185.00004 * 3 2 1 6 6 H 1.07996 * 120.00240 * 240.00330 * 5 3 2 7 7 C 1.37882 * 119.99734 * 59.99784 * 5 3 2 8 8 N 1.31510 * 119.99927 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99825 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47279 * 59.99929 * 9 7 5 11 11 H 1.48492 * 109.47013 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47243 * 299.99992 * 9 7 5 13 13 O 1.45207 * 109.47324 * 65.00120 * 3 2 1 14 14 C 1.34235 * 116.99776 * 269.99917 * 13 3 2 15 15 O 1.20820 * 119.99729 * 359.97438 * 14 13 3 16 16 C 1.50693 * 119.99719 * 179.97438 * 14 13 3 17 17 C 1.50698 * 109.47167 * 179.97438 * 16 14 13 18 18 C 1.33386 * 125.20233 * 89.99892 * 17 16 14 19 19 C 1.38432 * 114.92087 * 179.97438 * 18 17 16 20 20 C 1.33386 * 114.91918 * 0.02562 * 19 18 17 21 21 C 1.50703 * 125.20043 * 179.97438 * 20 19 18 22 22 S 1.75882 * 109.59433 * 0.24350 * 20 19 18 23 23 H 1.09001 * 109.46972 * 60.00112 * 1 2 3 24 24 H 1.08993 * 109.46872 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.46850 * 300.00170 * 1 2 3 26 26 H 1.09002 * 109.46791 * 239.99787 * 2 1 3 27 27 H 1.08997 * 109.47157 * 120.00379 * 2 1 3 28 28 H 0.97003 * 119.99905 * 179.97438 * 8 7 5 29 29 H 1.09010 * 109.47214 * 60.00189 * 16 14 13 30 30 H 1.09002 * 109.47540 * 300.00364 * 16 14 13 31 31 H 1.08001 * 122.54102 * 359.97438 * 18 17 16 32 32 H 1.07997 * 122.53785 * 180.02562 * 19 18 17 33 33 H 1.09002 * 109.47152 * 90.00037 * 21 20 19 34 34 H 1.09001 * 109.46980 * 330.00137 * 21 20 19 35 35 H 1.09004 * 109.47113 * 210.00118 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8800 -1.3812 10 1 6.5968 0.1453 -0.2343 11 1 6.3979 0.2157 -2.6498 12 1 6.5005 2.2800 -1.3809 13 8 1.6559 2.0917 1.2408 14 6 0.4727 2.7255 1.2560 15 8 -0.2187 2.7377 0.2653 16 6 0.0070 3.4216 2.5087 17 6 -1.3405 4.0499 2.2629 18 6 -2.5158 3.4529 2.4660 19 6 -3.6232 4.2290 2.1699 20 6 -3.3470 5.4560 1.7257 21 6 -4.3719 6.4899 1.3360 22 16 -1.6039 5.6801 1.6573 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.8293 -0.0604 -2.9503 29 1 0.7241 4.1959 2.7821 30 1 -0.0719 2.6971 3.3192 31 1 -2.5974 2.4407 2.8337 32 1 -4.6341 3.8682 2.2894 33 1 -4.6309 7.0913 2.2074 34 1 -5.2654 5.9919 0.9596 35 1 -3.9605 7.1344 0.5590 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187986937.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:00 Heat of formation + Delta-G solvation = -87.818733 kcal Electronic energy + Delta-G solvation = -18077.911799 eV Core-core repulsion = 15166.601127 eV Total energy + Delta-G solvation = -2911.310671 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.38314 -38.97147 -37.58017 -35.49923 -34.10833 -33.31352 -30.95355 -29.27156 -26.39819 -25.14719 -23.88108 -22.61974 -21.33235 -19.75841 -18.90005 -18.53852 -17.82807 -17.11171 -17.09620 -16.35565 -15.99034 -14.96287 -14.84157 -14.69485 -14.39055 -14.10908 -13.68013 -13.65129 -13.34112 -13.30101 -13.11114 -12.87360 -12.76748 -12.67966 -12.54019 -12.32496 -12.14874 -11.76054 -11.64612 -11.45668 -11.24350 -10.82095 -10.52348 -9.41351 -9.38598 -8.27344 -6.44570 -0.01307 0.66498 1.05934 1.39627 1.42084 1.45106 1.53106 1.73232 2.20512 2.47516 3.02155 3.58403 3.99286 4.10394 4.17233 4.36920 4.39976 4.40799 4.47411 4.57721 4.68889 4.75635 4.79531 4.84202 5.08102 5.10296 5.21684 5.24730 5.33476 5.39721 5.51385 5.62885 5.67531 5.99164 6.15168 6.60848 7.02583 7.27724 8.79059 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.034906 B = 0.004306 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.961456 B = 6501.283451 C = 6779.225908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.129 4.129 3 C 0.226 3.774 4 H 0.004 0.996 5 C -0.553 4.553 6 H 0.066 0.934 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.980 3.020 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.269 1.269 13 O -0.365 6.365 14 C 0.444 3.556 15 O -0.535 6.535 16 C -0.036 4.036 17 C -0.187 4.187 18 C -0.122 4.122 19 C -0.152 4.152 20 C -0.177 4.177 21 C -0.081 4.081 22 S 0.078 5.922 23 H 0.032 0.968 24 H 0.060 0.940 25 H 0.039 0.961 26 H 0.085 0.915 27 H 0.047 0.953 28 H 0.270 0.730 29 H 0.128 0.872 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.163 0.837 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.449 8.337 10.485 18.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.167 4.167 3 C 0.173 3.827 4 H 0.022 0.978 5 C -0.590 4.590 6 H 0.084 0.916 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.803 3.197 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.194 1.194 13 O -0.282 6.282 14 C 0.288 3.712 15 O -0.425 6.425 16 C -0.075 4.075 17 C -0.304 4.304 18 C -0.152 4.152 19 C -0.181 4.181 20 C -0.294 4.294 21 C -0.140 4.140 22 S 0.342 5.658 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.146 0.854 30 H 0.165 0.835 31 H 0.168 0.832 32 H 0.180 0.820 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.667 9.414 9.555 17.778 hybrid contribution 0.045 -1.367 -0.272 1.394 sum -11.623 8.048 9.283 16.912 Atomic orbital electron populations 1.21691 0.96220 1.00500 1.00090 1.21860 0.94489 0.98076 1.02323 1.20336 0.94432 0.89283 0.78657 0.97814 1.21331 0.90631 1.40078 1.06969 0.91576 1.25804 1.04237 0.93845 0.94332 1.70012 1.37515 1.37889 1.09817 0.85273 0.77701 0.78766 0.77917 1.18795 1.20241 1.19430 1.86457 1.36028 1.63177 1.42494 1.24186 0.79561 0.76501 0.90962 1.90613 1.55777 1.58851 1.37279 1.19849 0.92913 1.01061 0.93664 1.23828 0.97940 0.98483 1.10106 1.20350 0.91054 1.01553 1.02277 1.20293 1.00852 0.93352 1.03605 1.24924 0.96465 1.00856 1.07180 1.20455 0.95524 0.95651 1.02358 1.84249 1.02940 1.13030 1.65574 0.94928 0.92055 0.94153 0.89706 0.93438 0.92056 0.85445 0.83486 0.83221 0.82002 0.89025 0.89062 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.57 71.98 0.62 -5.04 16 2 C -0.13 -6.58 5.49 30.59 0.17 -6.41 16 3 C 0.23 12.45 2.25 29.85 0.07 12.52 16 4 H 0.00 0.25 7.16 -2.38 -0.02 0.24 16 5 C -0.55 -31.65 8.90 25.60 0.23 -31.43 16 6 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 7 C 0.02 0.98 5.29 84.66 0.45 1.43 16 8 N -0.91 -52.84 11.29 21.45 0.24 -52.60 16 9 Si 0.98 43.11 29.54 68.60 2.03 45.13 16 10 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 11 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 13 O -0.36 -17.49 9.81 -51.47 -0.50 -17.99 16 14 C 0.44 18.44 6.41 71.23 0.46 18.90 16 15 O -0.53 -25.46 13.18 21.98 0.29 -25.17 16 16 C -0.04 -1.03 6.31 29.10 0.18 -0.85 16 17 C -0.19 -5.32 5.00 24.59 0.12 -5.20 16 18 C -0.12 -3.13 10.05 21.22 0.21 -2.91 16 19 C -0.15 -3.42 10.05 21.22 0.21 -3.21 16 20 C -0.18 -4.00 6.51 24.59 0.16 -3.84 16 21 C -0.08 -1.23 10.38 71.24 0.74 -0.49 16 22 S 0.08 2.10 23.31 -56.49 -1.32 0.78 16 23 H 0.03 1.54 7.80 -2.39 -0.02 1.52 16 24 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.04 1.69 6.06 -2.39 -0.01 1.67 16 26 H 0.08 4.72 5.95 -2.39 -0.01 4.71 16 27 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 29 H 0.13 3.17 8.14 -2.38 -0.02 3.15 16 30 H 0.15 3.29 8.14 -2.39 -0.02 3.27 16 31 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 32 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 33 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -68.19 309.84 5.43 -62.76 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 1.08 Total: 13.63 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 3.62 Total: -26.53 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.24 Total: -52.60 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -0.22 Total: -43.17 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.32 Total: 0.78 kcal Total: -68.19 5.43 -62.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187986937.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.062 kcal (2) G-P(sol) polarization free energy of solvation -68.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds