Wall clock time and date at job start Mon Mar 30 2020 08:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52999 * 109.47347 * 2 1 4 4 H 1.08999 * 109.47034 * 305.17772 * 3 2 1 5 5 C 1.50698 * 109.47731 * 185.17610 * 3 2 1 6 6 H 1.08004 * 119.99859 * 244.94580 * 5 3 2 7 7 C 1.37872 * 120.00167 * 64.94299 * 5 3 2 8 8 N 1.31521 * 119.99933 * 7.03162 * 7 5 3 9 9 Si 1.86800 * 120.00066 * 187.03728 * 7 5 3 10 10 H 1.48493 * 109.47466 * 84.99228 * 9 7 5 11 11 H 1.48507 * 109.46835 * 204.99188 * 9 7 5 12 12 H 1.48497 * 109.46960 * 324.98940 * 9 7 5 13 13 O 1.45206 * 109.47271 * 65.17222 * 3 2 1 14 14 C 1.34799 * 117.00139 * 270.00633 * 13 3 2 15 15 O 1.21563 * 119.99705 * 359.97438 * 14 13 3 16 16 C 1.47031 * 120.00165 * 179.97438 * 14 13 3 17 17 C 1.36101 * 123.47599 * 0.02562 * 16 14 13 18 18 S 1.70438 * 110.80987 * 179.97438 * 17 16 14 19 19 C 1.75503 * 92.45521 * 0.02562 * 18 17 16 20 20 C 1.50699 * 124.70298 * 179.97438 * 19 18 17 21 21 C 1.32745 * 110.59525 * 359.75261 * 19 18 17 22 22 C 1.50699 * 123.45312 * 180.21157 * 21 19 18 23 23 H 1.09006 * 109.47372 * 299.99762 * 1 2 3 24 24 H 1.08998 * 109.47214 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47683 * 59.99927 * 1 2 3 26 26 H 1.09000 * 109.47142 * 119.99574 * 2 1 3 27 27 H 1.08996 * 109.47419 * 240.00217 * 2 1 3 28 28 H 0.96998 * 119.99724 * 180.02562 * 8 7 5 29 29 H 1.08009 * 124.59186 * 359.97438 * 17 16 14 30 30 H 1.08996 * 109.47041 * 0.02562 * 20 19 18 31 31 H 1.08995 * 109.47133 * 120.02442 * 20 19 18 32 32 H 1.08998 * 109.47001 * 240.02786 * 20 19 18 33 33 H 1.09003 * 109.47324 * 270.22908 * 22 21 19 34 34 H 1.09001 * 109.47093 * 30.22557 * 22 21 19 35 35 H 1.08991 * 109.47360 * 150.22437 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6029 1.9824 -0.8400 5 6 3.5415 1.4445 -0.1282 6 1 4.1521 1.8157 0.6817 7 6 4.1357 0.9725 -1.2792 8 7 3.3951 0.6502 -2.3171 9 14 5.9929 0.7906 -1.3646 10 1 6.3887 -0.5211 -0.7921 11 1 6.4330 0.8656 -2.7809 12 1 6.6334 1.8829 -0.5887 13 8 1.6594 2.0905 1.2425 14 6 0.4712 2.7269 1.2619 15 8 -0.2274 2.7401 0.2671 16 6 0.0203 3.4049 2.4861 17 6 0.7447 3.4349 3.6379 18 16 -0.0793 4.3065 4.8489 19 6 -1.4365 4.6436 3.7885 20 6 -2.6587 5.4319 4.1835 21 6 -1.2352 4.1121 2.5889 22 6 -2.2175 4.2306 1.4523 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 1.8932 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.8132 0.3178 -3.1268 29 1 1.7108 2.9695 3.7670 30 1 -2.5636 5.7544 5.2203 31 1 -2.7517 6.3055 3.5383 32 1 -3.5447 4.8059 4.0775 33 1 -2.9165 3.3949 1.4874 34 1 -2.7669 5.1677 1.5430 35 1 -1.6799 4.2151 0.5043 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188005602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:56 Heat of formation + Delta-G solvation = -93.528120 kcal Electronic energy + Delta-G solvation = -18421.828143 eV Core-core repulsion = 15510.269894 eV Total energy + Delta-G solvation = -2911.558249 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.39246 -39.01811 -37.32747 -35.49319 -33.66787 -33.15969 -30.32606 -29.38536 -26.79421 -25.79223 -24.93219 -22.48069 -21.26246 -19.65798 -18.83710 -18.46588 -17.95031 -17.19227 -16.96753 -16.29842 -15.35498 -15.19496 -14.86992 -14.68494 -14.14586 -13.91458 -13.69681 -13.53728 -13.45152 -13.28823 -13.11955 -12.95459 -12.85427 -12.78052 -12.66649 -12.55016 -12.15699 -11.80882 -11.77261 -11.46552 -11.13534 -10.83203 -10.56390 -9.63775 -9.31687 -8.31007 -6.45636 -0.32116 0.53869 0.83476 0.86616 1.39912 1.42559 1.52685 2.05749 2.14389 2.42490 3.00163 3.71481 4.01826 4.13850 4.31979 4.33119 4.34379 4.41818 4.54870 4.68354 4.74922 4.82244 4.85256 4.87479 4.99143 5.04090 5.13504 5.17971 5.26904 5.33085 5.48272 5.58346 5.62345 5.88901 6.11143 6.59729 7.00529 7.25837 8.78297 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.029228 B = 0.004993 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.756700 B = 5607.008842 C = 6131.356004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.121 4.121 3 C 0.225 3.775 4 H 0.010 0.990 5 C -0.552 4.552 6 H 0.064 0.936 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.979 3.021 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.266 1.266 13 O -0.362 6.362 14 C 0.507 3.493 15 O -0.533 6.533 16 C -0.171 4.171 17 C -0.196 4.196 18 S 0.262 5.738 19 C -0.210 4.210 20 C -0.076 4.076 21 C -0.083 4.083 22 C -0.094 4.094 23 H 0.035 0.965 24 H 0.064 0.936 25 H 0.037 0.963 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.271 0.729 29 H 0.178 0.822 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.777 7.642 15.197 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.159 4.159 3 C 0.172 3.828 4 H 0.028 0.972 5 C -0.590 4.590 6 H 0.083 0.917 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.802 3.198 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.191 1.191 13 O -0.278 6.278 14 C 0.352 3.648 15 O -0.426 6.426 16 C -0.188 4.188 17 C -0.334 4.334 18 S 0.530 5.470 19 C -0.326 4.326 20 C -0.135 4.135 21 C -0.093 4.093 22 C -0.153 4.153 23 H 0.054 0.946 24 H 0.083 0.917 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.195 0.805 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.594 7.918 16.228 20.447 hybrid contribution 0.857 -0.877 -2.387 2.684 sum -8.737 7.041 13.841 17.818 Atomic orbital electron populations 1.21700 0.96079 1.00698 1.00177 1.21765 0.94709 0.97937 1.01497 1.20381 0.94658 0.89195 0.78543 0.97183 1.21280 0.90378 1.44544 1.02783 0.91736 1.25808 1.04186 0.94115 0.93910 1.70096 1.37851 1.43454 1.03850 0.85255 0.77711 0.79243 0.77576 1.19011 1.20276 1.19070 1.86517 1.35430 1.63259 1.42641 1.21021 0.79723 0.76073 0.87989 1.90718 1.55609 1.59529 1.36738 1.19559 0.98468 1.07964 0.92777 1.26033 1.05361 1.03913 0.98124 1.82482 1.07697 1.45692 1.11147 1.24583 1.03559 1.08105 0.96399 1.20443 0.91399 0.98713 1.02904 1.19744 0.93985 0.98501 0.97038 1.20569 0.96682 1.02822 0.95187 0.94635 0.91746 0.94398 0.93080 0.91042 0.92018 0.80477 0.89384 0.89491 0.89513 0.91047 0.88992 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.87 8.57 71.98 0.62 -5.25 16 2 C -0.12 -6.22 5.53 30.59 0.17 -6.05 16 3 C 0.23 12.73 2.12 29.85 0.06 12.79 16 4 H 0.01 0.66 7.13 -2.39 -0.02 0.64 16 5 C -0.55 -32.17 8.83 25.60 0.23 -31.94 16 6 H 0.06 3.69 7.82 -2.91 -0.02 3.67 16 7 C 0.02 1.13 5.20 84.65 0.44 1.57 16 8 N -0.92 -53.75 12.01 21.45 0.26 -53.49 16 9 Si 0.98 43.55 29.54 68.60 2.03 45.58 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 13 O -0.36 -18.45 9.46 -57.10 -0.54 -18.99 16 14 C 0.51 23.46 6.38 70.13 0.45 23.91 16 15 O -0.53 -26.63 11.40 19.63 0.22 -26.41 16 16 C -0.17 -6.22 5.98 -19.88 -0.12 -6.34 16 17 C -0.20 -5.80 10.55 67.32 0.71 -5.09 16 18 S 0.26 5.20 22.99 -56.49 -1.30 3.90 16 19 C -0.21 -4.57 6.44 24.51 0.16 -4.42 16 20 C -0.08 -1.00 9.47 71.24 0.67 -0.33 16 21 C -0.08 -2.48 6.01 -19.45 -0.12 -2.59 16 22 C -0.09 -2.66 9.26 71.24 0.66 -2.00 16 23 H 0.03 1.58 6.05 -2.38 -0.01 1.56 16 24 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.04 1.82 7.80 -2.39 -0.02 1.80 16 26 H 0.05 2.49 8.14 -2.39 -0.02 2.48 16 27 H 0.07 3.95 6.65 -2.39 -0.02 3.94 16 28 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 29 H 0.18 5.15 8.02 -2.91 -0.02 5.12 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 1.01 7.93 -2.39 -0.02 0.99 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.09 1.92 7.38 -2.39 -0.02 1.90 16 35 H 0.06 2.05 6.03 -2.39 -0.01 2.03 16 Total: -1.00 -69.09 304.89 5.69 -63.40 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 1.09 Total: 11.75 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: 3.93 Total: -25.74 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.26 Total: -53.49 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -0.32 Total: -45.40 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -1.30 Total: 3.90 kcal Total: -69.09 5.69 -63.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188005602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.124 kcal (2) G-P(sol) polarization free energy of solvation -69.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds