Wall clock time and date at job start Mon Mar 30 2020 07:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46877 * 2 1 4 4 C 1.37416 * 123.35700 * 265.02536 * 3 2 1 5 5 C 1.33864 * 115.10973 * 179.97438 * 4 3 2 6 6 S 1.70623 * 110.96206 * 359.72156 * 5 4 3 7 7 C 1.36757 * 123.35454 * 84.99841 * 3 2 1 8 8 C 1.46388 * 125.46356 * 0.02604 * 7 3 2 9 9 O 1.21634 * 120.00080 * 359.97438 * 8 7 3 10 10 O 1.34895 * 120.00081 * 179.97438 * 8 7 3 11 11 C 1.45204 * 117.00088 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47153 * 329.99930 * 11 10 8 13 13 C 1.50699 * 109.47156 * 210.00342 * 11 10 8 14 14 H 1.08000 * 120.00147 * 359.97438 * 13 11 10 15 15 C 1.37878 * 120.00379 * 179.97438 * 13 11 10 16 16 N 1.31518 * 119.99761 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 120.00461 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46941 * 59.99620 * 17 15 13 19 19 H 1.48492 * 109.47261 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46544 * 300.00112 * 17 15 13 21 21 C 1.52992 * 109.47283 * 89.99783 * 11 10 8 22 22 C 1.52997 * 109.47482 * 295.00220 * 21 11 10 23 23 H 1.08998 * 109.46810 * 299.99773 * 1 2 3 24 24 H 1.08995 * 109.47406 * 60.00075 * 1 2 3 25 25 H 1.09002 * 109.46736 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47279 * 240.00412 * 2 1 3 27 27 H 1.08995 * 109.47406 * 119.99925 * 2 1 3 28 28 H 1.08000 * 122.44465 * 359.95868 * 4 3 2 29 29 H 1.07999 * 124.51655 * 179.97438 * 5 4 3 30 30 H 0.96999 * 120.00301 * 180.02562 * 16 15 13 31 31 H 1.09002 * 109.47103 * 174.99973 * 21 11 10 32 32 H 1.08998 * 109.46862 * 55.00785 * 21 11 10 33 33 H 1.09002 * 109.47153 * 59.99783 * 22 21 11 34 34 H 1.09001 * 109.46832 * 299.99974 * 22 21 11 35 35 H 1.09004 * 109.47261 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3780 2.1001 -1.1435 5 6 2.8033 3.3548 -0.9522 6 16 2.7846 3.7598 0.7052 7 6 2.1890 2.1630 1.1380 8 6 1.9010 1.7037 2.4978 9 8 1.4851 0.5759 2.6836 10 8 2.0969 2.5314 3.5449 11 6 1.7908 2.0087 4.8645 12 1 0.9909 1.2723 4.7871 13 6 1.3502 3.1365 5.7617 14 1 1.3051 4.1452 5.3786 15 6 1.0045 2.8806 7.0717 16 7 1.0589 1.6521 7.5382 17 14 0.4590 4.2786 8.1840 18 1 -0.7512 4.9222 7.6128 19 1 0.1459 3.7441 9.5336 20 1 1.5495 5.2811 8.2899 21 6 3.0383 1.3465 5.4528 22 6 3.4128 0.1253 4.6106 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.3116 1.6540 -2.1248 29 1 3.1129 4.0232 -1.7421 30 1 0.8154 1.4719 8.4596 31 1 2.8347 1.0332 6.4768 32 1 3.8638 2.0582 5.4481 33 1 3.6164 0.4387 3.5867 34 1 2.5872 -0.5863 4.6155 35 1 4.3018 -0.3462 5.0295 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188043685.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:39 Heat of formation + Delta-G solvation = -72.307623 kcal Electronic energy + Delta-G solvation = -18588.464557 eV Core-core repulsion = 15677.826498 eV Total energy + Delta-G solvation = -2910.638059 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.70390 -38.09888 -35.59858 -33.49394 -32.58615 -31.38122 -29.42471 -27.24699 -25.34532 -23.27564 -22.27720 -21.74261 -19.77237 -18.33924 -18.01272 -16.56704 -16.04325 -15.44995 -15.27008 -14.73315 -14.14389 -13.89467 -13.70706 -13.01965 -12.91914 -12.81382 -12.24655 -12.06133 -11.77859 -11.46820 -11.35923 -11.32604 -11.17263 -10.96697 -10.82484 -10.66455 -10.51876 -10.27554 -9.77507 -9.57162 -9.35782 -8.81368 -8.70668 -8.44306 -8.33683 -6.18127 -4.25163 0.63662 1.66036 2.09803 2.47514 3.26618 3.30076 3.32160 3.51821 3.67236 4.34379 4.85790 5.13737 5.18418 5.23430 5.44911 5.60254 5.69056 5.79454 5.94081 6.08493 6.18832 6.24620 6.31383 6.37722 6.45291 6.51261 6.62919 6.89270 6.97547 7.17653 7.25020 7.61655 7.73952 7.93723 8.15725 8.61802 8.87995 9.39834 10.88649 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.024138 B = 0.005702 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.728918 B = 4908.975866 C = 5377.346270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.072 4.072 3 C -0.028 4.028 4 C -0.149 4.149 5 C -0.248 4.248 6 S 0.243 5.757 7 C -0.245 4.245 8 C 0.525 3.475 9 O -0.499 6.499 10 O -0.353 6.353 11 C 0.224 3.776 12 H 0.049 0.951 13 C -0.522 4.522 14 H 0.068 0.932 15 C 0.064 3.936 16 N -0.888 5.888 17 Si 0.911 3.089 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.136 4.136 22 C -0.143 4.143 23 H 0.061 0.939 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.141 0.859 29 H 0.166 0.834 30 H 0.267 0.733 31 H 0.109 0.891 32 H 0.041 0.959 33 H 0.031 0.969 34 H 0.053 0.947 35 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.045 0.844 -15.051 15.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 C -0.043 4.043 4 C -0.180 4.180 5 C -0.386 4.386 6 S 0.513 5.487 7 C -0.363 4.363 8 C 0.369 3.631 9 O -0.391 6.391 10 O -0.270 6.270 11 C 0.172 3.828 12 H 0.066 0.934 13 C -0.560 4.560 14 H 0.086 0.914 15 C -0.138 4.138 16 N -0.526 5.526 17 Si 0.738 3.262 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.174 4.174 22 C -0.200 4.200 23 H 0.080 0.920 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.114 0.886 28 H 0.158 0.842 29 H 0.183 0.817 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.283 1.783 -13.930 14.423 hybrid contribution -0.579 -0.623 -0.309 0.905 sum 2.703 1.161 -14.239 14.540 Atomic orbital electron populations 1.21608 0.94354 1.01689 1.01841 1.20411 0.96537 0.90651 1.03483 1.19502 0.96926 0.97537 0.90286 1.19798 1.04580 0.94360 0.99304 1.25421 1.08588 1.01456 1.03139 1.83427 1.58334 1.10744 0.96161 1.23810 1.16823 1.00062 0.95642 1.19483 0.75227 0.83784 0.84615 1.90791 1.42704 1.19757 1.85837 1.86579 1.77606 1.44665 1.18111 1.20691 0.94240 0.95224 0.72633 0.93364 1.20998 1.45627 0.94255 0.95116 0.91388 1.24870 0.95134 0.96312 0.97525 1.69879 1.47469 1.18825 1.16382 0.86346 0.79251 0.81510 0.79124 1.19988 1.21017 1.19925 1.22022 0.97556 0.95016 1.02785 1.21861 0.99883 0.99480 0.98787 0.91987 0.93377 0.92405 0.91516 0.88641 0.84173 0.81661 0.92324 0.87293 0.93992 0.94941 0.92742 0.94829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.78 37.16 0.36 -1.51 16 2 C -0.07 -1.01 5.50 -27.88 -0.15 -1.16 16 3 C -0.03 -0.42 5.16 -105.46 -0.54 -0.96 16 4 C -0.15 -1.80 9.96 -41.42 -0.41 -2.21 16 5 C -0.25 -2.82 10.92 29.20 0.32 -2.50 16 6 S 0.24 3.46 22.92 -107.50 -2.46 0.99 16 7 C -0.24 -4.30 6.45 -36.84 -0.24 -4.54 16 8 C 0.53 11.36 6.37 34.01 0.22 11.58 16 9 O -0.50 -11.36 10.91 -19.37 -0.21 -11.57 16 10 O -0.35 -8.53 9.66 -41.03 -0.40 -8.93 16 11 C 0.22 5.97 2.25 -27.89 -0.06 5.91 16 12 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 13 C -0.52 -14.61 8.90 -34.44 -0.31 -14.92 16 14 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 15 C 0.06 1.75 5.29 -17.82 -0.09 1.65 16 16 N -0.89 -24.99 11.30 55.43 0.63 -24.37 16 17 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 21 C -0.14 -3.39 5.49 -26.74 -0.15 -3.54 16 22 C -0.14 -3.16 8.56 37.16 0.32 -2.84 16 23 H 0.06 1.01 7.60 -51.93 -0.39 0.62 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 27 H 0.10 1.57 6.33 -51.93 -0.33 1.24 16 28 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 29 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.11 2.93 5.96 -51.93 -0.31 2.62 16 32 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.03 0.70 6.06 -51.93 -0.31 0.38 16 34 H 0.05 1.25 7.79 -51.93 -0.40 0.84 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 304.11 15.07 4.58 4.58 Total: -1.00 -29.42 304.11 -8.25 -37.67 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.63 Total: 0.62 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -0.74 Total: -15.02 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.63 Total: -24.37 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.61 Total: -20.50 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -2.46 Total: 0.99 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.42 -8.25 -37.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188043685.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.635 kcal (2) G-P(sol) polarization free energy of solvation -29.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds