Wall clock time and date at job start Mon Mar 30 2020 07:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46877 * 2 1 4 4 C 1.37416 * 123.35700 * 265.02536 * 3 2 1 5 5 C 1.33864 * 115.10973 * 179.97438 * 4 3 2 6 6 S 1.70623 * 110.96206 * 359.72156 * 5 4 3 7 7 C 1.36757 * 123.35454 * 84.99841 * 3 2 1 8 8 C 1.46388 * 125.46356 * 0.02604 * 7 3 2 9 9 O 1.21634 * 120.00080 * 359.97438 * 8 7 3 10 10 O 1.34895 * 120.00081 * 179.97438 * 8 7 3 11 11 C 1.45204 * 117.00088 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47153 * 329.99930 * 11 10 8 13 13 C 1.50699 * 109.47156 * 210.00342 * 11 10 8 14 14 H 1.08000 * 120.00147 * 359.97438 * 13 11 10 15 15 C 1.37878 * 120.00379 * 179.97438 * 13 11 10 16 16 N 1.31518 * 119.99761 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 120.00461 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46941 * 59.99620 * 17 15 13 19 19 H 1.48492 * 109.47261 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46544 * 300.00112 * 17 15 13 21 21 C 1.52992 * 109.47283 * 89.99783 * 11 10 8 22 22 C 1.52997 * 109.47482 * 295.00220 * 21 11 10 23 23 H 1.08998 * 109.46810 * 299.99773 * 1 2 3 24 24 H 1.08995 * 109.47406 * 60.00075 * 1 2 3 25 25 H 1.09002 * 109.46736 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47279 * 240.00412 * 2 1 3 27 27 H 1.08995 * 109.47406 * 119.99925 * 2 1 3 28 28 H 1.08000 * 122.44465 * 359.95868 * 4 3 2 29 29 H 1.07999 * 124.51655 * 179.97438 * 5 4 3 30 30 H 0.96999 * 120.00301 * 180.02562 * 16 15 13 31 31 H 1.09002 * 109.47103 * 174.99973 * 21 11 10 32 32 H 1.08998 * 109.46862 * 55.00785 * 21 11 10 33 33 H 1.09002 * 109.47153 * 59.99783 * 22 21 11 34 34 H 1.09001 * 109.46832 * 299.99974 * 22 21 11 35 35 H 1.09004 * 109.47261 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3780 2.1001 -1.1435 5 6 2.8033 3.3548 -0.9522 6 16 2.7846 3.7598 0.7052 7 6 2.1890 2.1630 1.1380 8 6 1.9010 1.7037 2.4978 9 8 1.4851 0.5759 2.6836 10 8 2.0969 2.5314 3.5449 11 6 1.7908 2.0087 4.8645 12 1 0.9909 1.2723 4.7871 13 6 1.3502 3.1365 5.7617 14 1 1.3051 4.1452 5.3786 15 6 1.0045 2.8806 7.0717 16 7 1.0589 1.6521 7.5382 17 14 0.4590 4.2786 8.1840 18 1 -0.7512 4.9222 7.6128 19 1 0.1459 3.7441 9.5336 20 1 1.5495 5.2811 8.2899 21 6 3.0383 1.3465 5.4528 22 6 3.4128 0.1253 4.6106 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.3116 1.6540 -2.1248 29 1 3.1129 4.0232 -1.7421 30 1 0.8154 1.4719 8.4596 31 1 2.8347 1.0332 6.4768 32 1 3.8638 2.0582 5.4481 33 1 3.6164 0.4387 3.5867 34 1 2.5872 -0.5863 4.6155 35 1 4.3018 -0.3462 5.0295 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188043685.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:37 Heat of formation + Delta-G solvation = -87.913287 kcal Electronic energy + Delta-G solvation = -18589.141269 eV Core-core repulsion = 15677.826498 eV Total energy + Delta-G solvation = -2911.314771 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.34659 -39.37179 -37.37192 -35.50319 -33.67171 -33.39384 -30.71852 -29.22090 -26.59591 -25.21359 -23.47866 -23.16893 -21.68377 -19.86590 -19.27947 -18.54747 -17.71562 -17.02869 -16.76874 -16.48824 -15.57629 -15.03913 -14.91938 -14.77146 -14.63134 -14.11325 -13.73551 -13.46891 -13.32356 -13.23741 -13.13135 -12.84967 -12.80821 -12.57555 -12.39741 -12.15391 -12.03660 -11.77016 -11.63432 -11.41860 -11.15083 -10.84087 -10.53893 -9.84654 -9.42869 -8.28391 -6.45406 -0.54082 0.53090 1.04611 1.35320 1.40441 1.44215 1.52186 2.00430 2.02426 2.42141 3.01081 3.86889 3.94832 4.18777 4.31249 4.35302 4.37670 4.45519 4.50197 4.55696 4.75957 4.80716 4.88433 5.05407 5.05525 5.10121 5.19825 5.26850 5.35506 5.41575 5.47803 5.56178 5.65335 5.95433 6.10646 6.58655 6.96693 7.25913 8.78381 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.024138 B = 0.005702 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.728918 B = 4908.975866 C = 5377.346270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.075 4.075 3 C -0.011 4.011 4 C -0.156 4.156 5 C -0.208 4.208 6 S 0.231 5.769 7 C -0.303 4.303 8 C 0.519 3.481 9 O -0.524 6.524 10 O -0.365 6.365 11 C 0.229 3.771 12 H 0.008 0.992 13 C -0.552 4.552 14 H 0.064 0.936 15 C 0.019 3.981 16 N -0.913 5.913 17 Si 0.980 3.020 18 H -0.270 1.270 19 H -0.275 1.275 20 H -0.264 1.264 21 C -0.129 4.129 22 C -0.128 4.128 23 H 0.022 0.978 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.064 0.936 28 H 0.180 0.820 29 H 0.210 0.790 30 H 0.271 0.729 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.032 0.968 34 H 0.038 0.962 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.704 1.903 -17.520 18.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.114 4.114 3 C -0.027 4.027 4 C -0.186 4.186 5 C -0.346 4.346 6 S 0.501 5.499 7 C -0.421 4.421 8 C 0.365 3.635 9 O -0.417 6.417 10 O -0.282 6.282 11 C 0.176 3.824 12 H 0.026 0.974 13 C -0.590 4.590 14 H 0.082 0.918 15 C -0.181 4.181 16 N -0.551 5.551 17 Si 0.803 3.197 18 H -0.195 1.195 19 H -0.200 1.200 20 H -0.189 1.189 21 C -0.167 4.167 22 C -0.185 4.185 23 H 0.041 0.959 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.122 0.878 27 H 0.082 0.918 28 H 0.198 0.802 29 H 0.227 0.773 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.951 2.839 -16.419 17.125 hybrid contribution -0.786 -0.981 0.292 1.291 sum 3.166 1.858 -16.127 16.540 Atomic orbital electron populations 1.21566 0.94145 1.02313 1.01001 1.20472 0.96682 0.90506 1.03745 1.19902 0.94660 0.97619 0.90521 1.20098 1.04376 0.94437 0.99686 1.25930 1.05127 1.01519 1.02002 1.83439 1.58475 1.09119 0.98857 1.23632 1.21698 1.02846 0.93881 1.20164 0.74465 0.83369 0.85527 1.90762 1.43943 1.20629 1.86370 1.86552 1.78282 1.45432 1.17903 1.20365 0.93707 0.94191 0.74109 0.97449 1.21285 1.47102 0.94375 0.96205 0.91826 1.25785 0.94587 0.99007 0.98675 1.70003 1.47479 1.20746 1.16881 0.85279 0.79028 0.78296 0.77103 1.19458 1.20005 1.18853 1.21863 0.96874 0.96008 1.01933 1.21693 1.00371 0.97983 0.98471 0.95861 0.90997 0.91153 0.87752 0.91775 0.80242 0.77300 0.91958 0.89355 0.93804 0.94860 0.94321 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 9.78 71.98 0.70 -2.82 16 2 C -0.07 -2.02 5.50 29.85 0.16 -1.86 16 3 C -0.01 -0.30 5.16 -20.41 -0.11 -0.41 16 4 C -0.16 -3.09 9.96 21.08 0.21 -2.88 16 5 C -0.21 -3.80 10.92 66.82 0.73 -3.07 16 6 S 0.23 6.28 22.92 -56.49 -1.29 4.99 16 7 C -0.30 -10.73 6.45 24.05 0.16 -10.58 16 8 C 0.52 23.68 6.37 69.94 0.45 24.13 16 9 O -0.52 -25.53 10.91 19.40 0.21 -25.32 16 10 O -0.36 -18.63 9.66 -58.09 -0.56 -19.19 16 11 C 0.23 12.94 2.25 29.85 0.07 13.00 16 12 H 0.01 0.49 7.16 -2.39 -0.02 0.47 16 13 C -0.55 -32.18 8.90 25.60 0.23 -31.95 16 14 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 15 C 0.02 1.09 5.29 84.65 0.45 1.54 16 16 N -0.91 -52.96 11.30 21.45 0.24 -52.72 16 17 Si 0.98 43.51 29.54 68.60 2.03 45.53 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 21 C -0.13 -6.71 5.49 30.59 0.17 -6.54 16 22 C -0.13 -5.84 8.56 71.98 0.62 -5.22 16 23 H 0.02 0.77 7.60 -2.39 -0.02 0.76 16 24 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.10 2.01 8.12 -2.39 -0.02 1.99 16 27 H 0.06 2.16 6.33 -2.39 -0.02 2.15 16 28 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 29 H 0.21 2.03 8.06 -2.91 -0.02 2.01 16 30 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.09 4.97 5.96 -2.39 -0.01 4.95 16 32 H 0.04 2.20 8.14 -2.39 -0.02 2.19 16 33 H 0.03 1.48 6.06 -2.39 -0.01 1.46 16 34 H 0.04 1.85 7.79 -2.39 -0.02 1.83 16 35 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 Total: -1.00 -68.31 304.11 5.54 -62.77 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 1.09 Total: 10.61 kcal Atomic # 6 Polarization: -30.50 SS G_CDS: 3.83 Total: -26.67 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.24 Total: -52.72 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -0.35 Total: -44.52 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 6.28 SS G_CDS: -1.29 Total: 4.99 kcal Total: -68.31 5.54 -62.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188043685.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.145 kcal (2) G-P(sol) polarization free energy of solvation -68.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds