Wall clock time and date at job start Mon Mar 30 2020 08:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 O 1.45201 * 109.47339 * 64.99923 * 3 2 1 14 14 C 1.34901 * 116.99588 * 270.00330 * 13 3 2 15 15 O 1.21624 * 120.00313 * 359.97438 * 14 13 3 16 16 C 1.46390 * 119.99690 * 180.02562 * 14 13 3 17 17 C 1.36754 * 125.46265 * 179.97438 * 16 14 13 18 18 C 1.37413 * 113.28721 * 179.97438 * 17 16 14 19 19 C 1.50699 * 122.44237 * 180.02562 * 18 17 16 20 20 C 1.33864 * 115.11057 * 0.02562 * 18 17 16 21 21 C 1.50703 * 124.51675 * 179.97438 * 20 18 17 22 22 S 1.70611 * 110.96366 * 359.72387 * 20 18 17 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 29 29 H 1.07995 * 123.35248 * 0.02562 * 17 16 14 30 30 H 1.09002 * 109.46754 * 89.98225 * 19 18 17 31 31 H 1.09006 * 109.47141 * 209.97818 * 19 18 17 32 32 H 1.08996 * 109.47096 * 329.98113 * 19 18 17 33 33 H 1.08997 * 109.46802 * 89.99689 * 21 20 18 34 34 H 1.08993 * 109.47343 * 209.99865 * 21 20 18 35 35 H 1.08999 * 109.47132 * 330.00217 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 8 1.6559 2.0918 1.2407 14 6 0.4668 2.7287 1.2559 15 8 -0.2294 2.7410 0.2587 16 6 0.0148 3.4059 2.4725 17 6 -1.1651 4.0831 2.6119 18 6 -1.3368 4.6234 3.8636 19 6 -2.5643 5.4112 4.2427 20 6 -0.3342 4.3989 4.7217 21 6 -0.3016 4.8929 6.1450 22 16 0.8987 3.4730 3.9911 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0604 -2.9502 29 1 -1.8900 4.1826 1.8176 30 1 -3.3198 4.7358 4.6442 31 1 -2.3016 6.1524 4.9975 32 1 -2.9593 5.9151 3.3606 33 1 -0.7534 4.1470 6.7989 34 1 0.7318 5.0627 6.4471 35 1 -0.8596 5.8263 6.2186 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188089976.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:51 Heat of formation + Delta-G solvation = -74.931885 kcal Electronic energy + Delta-G solvation = -18124.227511 eV Core-core repulsion = 15213.475656 eV Total energy + Delta-G solvation = -2910.751856 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.58566 -38.35873 -35.70850 -33.49609 -32.26551 -31.31489 -29.70394 -27.47535 -26.09062 -23.84992 -22.92594 -20.85935 -19.63637 -18.42744 -17.81538 -16.69108 -15.95181 -15.59459 -15.29954 -14.61987 -14.49177 -13.94701 -13.43867 -13.03768 -12.96177 -12.84341 -12.55021 -12.30596 -11.92029 -11.74149 -11.62855 -11.42625 -11.33267 -11.16172 -10.96458 -10.66942 -10.62668 -10.28153 -9.83760 -9.70086 -9.37331 -8.81340 -8.55839 -8.44574 -8.29947 -6.18188 -4.25222 0.61185 1.61355 2.08056 2.41076 3.25117 3.30401 3.34033 3.51853 3.63986 4.34085 4.71406 5.01815 5.09263 5.14007 5.27267 5.34979 5.50737 5.58801 5.62292 5.70782 5.86796 6.08003 6.24475 6.30821 6.35065 6.47046 6.49336 6.88002 6.96840 7.17500 7.22887 7.61399 7.73526 7.92641 8.15136 8.60076 8.87273 9.39750 10.88700 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.029384 B = 0.004901 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.679522 B = 5711.610778 C = 6287.519784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.223 3.777 4 H 0.049 0.951 5 C -0.521 4.521 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.352 6.352 14 C 0.526 3.474 15 O -0.505 6.505 16 C -0.240 4.240 17 C -0.057 4.057 18 C -0.127 4.127 19 C -0.090 4.090 20 C -0.220 4.220 21 C -0.082 4.082 22 S 0.248 5.752 23 H 0.033 0.967 24 H 0.053 0.947 25 H 0.031 0.969 26 H 0.042 0.958 27 H 0.110 0.890 28 H 0.266 0.734 29 H 0.151 0.849 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.112 7.335 14.226 17.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.268 6.268 14 C 0.369 3.631 15 O -0.397 6.397 16 C -0.359 4.359 17 C -0.090 4.090 18 C -0.140 4.140 19 C -0.149 4.149 20 C -0.340 4.340 21 C -0.140 4.140 22 S 0.518 5.482 23 H 0.053 0.947 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.128 0.872 28 H 0.076 0.924 29 H 0.169 0.831 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.814 6.620 14.225 17.106 hybrid contribution -0.544 0.421 -0.846 1.091 sum -7.358 7.041 13.379 16.814 Atomic orbital electron populations 1.21868 0.98365 0.99062 1.00798 1.22029 0.92667 0.99272 1.03427 1.20730 0.95094 0.88767 0.78362 0.93365 1.21035 0.89546 1.39031 1.06316 0.91291 1.24878 0.99249 0.94738 0.95008 1.69893 1.35380 1.37804 1.09459 0.86278 0.83864 0.78692 0.77350 1.20334 1.20958 1.19612 1.86579 1.33234 1.62571 1.44425 1.19528 0.81201 0.76595 0.85808 1.90825 1.55684 1.58874 1.34287 1.23867 1.01741 1.11851 0.98392 1.20572 0.95703 0.95399 0.97316 1.18560 0.98348 1.03978 0.93131 1.20481 0.94027 0.98597 1.01802 1.24235 1.00713 1.07093 1.01923 1.20352 1.02925 1.01373 0.89350 1.83373 1.18204 1.45856 1.00766 0.94740 0.92763 0.94964 0.93919 0.87224 0.92371 0.83104 0.91399 0.91592 0.91520 0.90643 0.91226 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.56 37.16 0.32 -2.92 16 2 C -0.14 -3.44 5.49 -26.73 -0.15 -3.58 16 3 C 0.22 6.03 2.25 -27.88 -0.06 5.96 16 4 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16 5 C -0.52 -14.70 8.90 -34.44 -0.31 -15.01 16 6 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -25.14 11.29 55.43 0.63 -24.51 16 9 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 13 O -0.35 -8.64 9.66 -41.04 -0.40 -9.04 16 14 C 0.53 11.75 6.37 34.01 0.22 11.97 16 15 O -0.51 -12.25 14.03 -19.36 -0.27 -12.52 16 16 C -0.24 -4.31 6.45 -36.84 -0.24 -4.54 16 17 C -0.06 -0.87 9.79 -40.42 -0.40 -1.27 16 18 C -0.13 -1.59 5.78 -106.46 -0.62 -2.21 16 19 C -0.09 -0.81 9.84 36.01 0.35 -0.46 16 20 C -0.22 -2.64 6.28 -35.84 -0.22 -2.87 16 21 C -0.08 -0.68 9.98 36.01 0.36 -0.32 16 22 S 0.25 3.62 22.87 -107.50 -2.46 1.16 16 23 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 1.27 7.79 -51.93 -0.40 0.87 16 25 H 0.03 0.71 6.06 -51.93 -0.31 0.39 16 26 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.11 2.98 5.95 -51.93 -0.31 2.67 16 28 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.15 2.20 8.06 -52.49 -0.42 1.77 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.49 6.54 -51.93 -0.34 0.15 16 32 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.53 6.57 -51.93 -0.34 0.19 16 LS Contribution 306.80 15.07 4.62 4.62 Total: -1.00 -30.54 306.80 -8.32 -38.86 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -4.58 Total: -1.05 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -0.84 Total: -13.59 kcal Atomic # 7 Polarization: -25.14 SS G_CDS: 0.63 Total: -24.51 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.67 Total: -21.56 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -2.46 Total: 1.16 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.54 -8.32 -38.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188089976.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.074 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds