Wall clock time and date at job start Mon Mar 30 2020 08:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 O 1.45201 * 109.47339 * 64.99923 * 3 2 1 14 14 C 1.34901 * 116.99588 * 270.00330 * 13 3 2 15 15 O 1.21624 * 120.00313 * 359.97438 * 14 13 3 16 16 C 1.46390 * 119.99690 * 180.02562 * 14 13 3 17 17 C 1.36754 * 125.46265 * 179.97438 * 16 14 13 18 18 C 1.37413 * 113.28721 * 179.97438 * 17 16 14 19 19 C 1.50699 * 122.44237 * 180.02562 * 18 17 16 20 20 C 1.33864 * 115.11057 * 0.02562 * 18 17 16 21 21 C 1.50703 * 124.51675 * 179.97438 * 20 18 17 22 22 S 1.70611 * 110.96366 * 359.72387 * 20 18 17 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 29 29 H 1.07995 * 123.35248 * 0.02562 * 17 16 14 30 30 H 1.09002 * 109.46754 * 89.98225 * 19 18 17 31 31 H 1.09006 * 109.47141 * 209.97818 * 19 18 17 32 32 H 1.08996 * 109.47096 * 329.98113 * 19 18 17 33 33 H 1.08997 * 109.46802 * 89.99689 * 21 20 18 34 34 H 1.08993 * 109.47343 * 209.99865 * 21 20 18 35 35 H 1.08999 * 109.47132 * 330.00217 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 8 1.6559 2.0918 1.2407 14 6 0.4668 2.7287 1.2559 15 8 -0.2294 2.7410 0.2587 16 6 0.0148 3.4059 2.4725 17 6 -1.1651 4.0831 2.6119 18 6 -1.3368 4.6234 3.8636 19 6 -2.5643 5.4112 4.2427 20 6 -0.3342 4.3989 4.7217 21 6 -0.3016 4.8929 6.1450 22 16 0.8987 3.4730 3.9911 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0604 -2.9502 29 1 -1.8900 4.1826 1.8176 30 1 -3.3198 4.7358 4.6442 31 1 -2.3016 6.1524 4.9975 32 1 -2.9593 5.9151 3.3606 33 1 -0.7534 4.1470 6.7989 34 1 0.7318 5.0627 6.4471 35 1 -0.8596 5.8263 6.2186 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188089976.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:51 Heat of formation + Delta-G solvation = -91.367753 kcal Electronic energy + Delta-G solvation = -18124.940224 eV Core-core repulsion = 15213.475656 eV Total energy + Delta-G solvation = -2911.464568 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.33973 -39.52606 -37.58019 -35.53338 -33.56179 -33.12269 -30.53717 -29.44092 -27.32638 -25.38437 -24.56839 -22.48176 -21.47786 -19.69650 -19.28773 -18.65729 -17.61281 -17.17115 -16.96900 -16.49605 -15.43128 -15.24487 -14.84376 -14.75143 -14.23033 -14.04409 -13.65660 -13.47835 -13.38443 -13.35213 -13.16181 -12.86109 -12.81361 -12.64936 -12.57845 -12.50315 -12.16017 -11.81455 -11.73130 -11.58278 -11.39069 -10.87695 -10.55574 -9.69988 -9.39165 -8.29384 -6.46689 -0.62519 0.44410 0.96258 1.22196 1.40676 1.43066 1.53990 1.93501 1.95640 2.40564 3.00219 3.81965 3.94149 4.12437 4.24267 4.32645 4.35059 4.49594 4.58012 4.67405 4.73302 4.77875 4.88076 4.92093 5.04189 5.08940 5.11429 5.16979 5.30342 5.40214 5.48034 5.54757 5.62301 5.90302 6.05679 6.56516 6.88228 7.24172 8.77784 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.029384 B = 0.004901 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.679522 B = 5711.610778 C = 6287.519784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.226 3.774 4 H 0.007 0.993 5 C -0.552 4.552 6 H 0.065 0.935 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.982 3.018 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.267 1.267 13 O -0.360 6.360 14 C 0.522 3.478 15 O -0.539 6.539 16 C -0.297 4.297 17 C -0.038 4.038 18 C -0.140 4.140 19 C -0.088 4.088 20 C -0.187 4.187 21 C -0.086 4.086 22 S 0.241 5.759 23 H 0.064 0.936 24 H 0.036 0.964 25 H 0.031 0.969 26 H 0.046 0.954 27 H 0.090 0.910 28 H 0.271 0.729 29 H 0.151 0.849 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.333 8.277 16.805 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.173 3.827 4 H 0.025 0.975 5 C -0.589 4.589 6 H 0.083 0.917 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.805 3.195 10 H -0.190 1.190 11 H -0.201 1.201 12 H -0.191 1.191 13 O -0.277 6.277 14 C 0.368 3.632 15 O -0.432 6.432 16 C -0.415 4.415 17 C -0.073 4.073 18 C -0.152 4.152 19 C -0.146 4.146 20 C -0.307 4.307 21 C -0.144 4.144 22 S 0.512 5.488 23 H 0.083 0.917 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.168 0.832 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.099 0.901 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.049 7.566 16.823 19.747 hybrid contribution -0.581 0.225 -1.538 1.659 sum -7.630 7.792 15.285 18.777 Atomic orbital electron populations 1.21715 0.96400 1.00681 0.99942 1.21878 0.94386 0.97965 1.02495 1.20451 0.94765 0.89304 0.78184 0.97500 1.21302 0.90222 1.40287 1.07110 0.91687 1.25807 1.04371 0.93713 0.94177 1.70012 1.37513 1.37774 1.09833 0.85190 0.77465 0.79150 0.77660 1.19045 1.20139 1.19101 1.86557 1.34888 1.63232 1.42995 1.20204 0.79970 0.75888 0.87133 1.90783 1.56179 1.60270 1.35987 1.23606 1.04187 1.15303 0.98387 1.20866 0.94304 0.93508 0.98590 1.18874 1.00079 1.04395 0.91808 1.20582 0.92448 0.98852 1.02754 1.24800 0.98557 1.03971 1.03413 1.20609 1.04414 1.02846 0.86531 1.83316 1.19262 1.46935 0.99317 0.91701 0.94448 0.94962 0.93529 0.89171 0.91924 0.83175 0.90077 0.89254 0.91141 0.88657 0.90125 0.88016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.04 8.56 71.98 0.62 -5.42 16 2 C -0.13 -6.78 5.49 30.60 0.17 -6.62 16 3 C 0.23 12.89 2.25 29.85 0.07 12.95 16 4 H 0.01 0.46 7.16 -2.39 -0.02 0.44 16 5 C -0.55 -32.24 8.90 25.60 0.23 -32.02 16 6 H 0.06 3.74 7.81 -2.91 -0.02 3.72 16 7 C 0.02 1.08 5.29 84.66 0.45 1.53 16 8 N -0.91 -53.06 11.29 21.45 0.24 -52.82 16 9 Si 0.98 43.50 29.54 68.60 2.03 45.52 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 12 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 13 O -0.36 -18.64 9.66 -58.16 -0.56 -19.20 16 14 C 0.52 24.60 6.37 69.94 0.45 25.04 16 15 O -0.54 -27.77 14.03 19.43 0.27 -27.50 16 16 C -0.30 -10.91 6.45 24.05 0.16 -10.76 16 17 C -0.04 -1.15 9.79 21.73 0.21 -0.94 16 18 C -0.14 -3.15 5.78 -21.05 -0.12 -3.27 16 19 C -0.09 -1.24 9.84 71.24 0.70 -0.54 16 20 C -0.19 -3.95 6.28 24.69 0.15 -3.80 16 21 C -0.09 -1.02 9.98 71.24 0.71 -0.31 16 22 S 0.24 6.89 22.87 -56.49 -1.29 5.60 16 23 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 24 H 0.04 1.82 7.79 -2.39 -0.02 1.80 16 25 H 0.03 1.46 6.06 -2.38 -0.01 1.45 16 26 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.09 5.09 5.95 -2.39 -0.01 5.08 16 28 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 29 H 0.15 4.41 8.06 -2.91 -0.02 4.39 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 0.87 6.54 -2.38 -0.02 0.85 16 32 H 0.07 0.97 8.13 -2.39 -0.02 0.95 16 33 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.10 0.81 6.57 -2.39 -0.02 0.80 16 Total: -1.00 -69.59 306.80 5.57 -64.03 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 1.09 Total: 8.50 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: 3.79 Total: -24.14 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: 0.24 Total: -52.82 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -0.29 Total: -46.70 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 6.89 SS G_CDS: -1.29 Total: 5.60 kcal Total: -69.59 5.57 -64.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188089976.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.340 kcal (2) G-P(sol) polarization free energy of solvation -69.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds