Wall clock time and date at job start Mon Mar 30 2020 08:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47475 * 2 1 4 4 H 1.08996 * 109.47288 * 305.00301 * 3 2 1 5 5 C 1.50699 * 109.47512 * 184.99826 * 3 2 1 6 6 H 1.08002 * 119.99761 * 240.00615 * 5 3 2 7 7 C 1.37872 * 119.99920 * 59.99917 * 5 3 2 8 8 N 1.31518 * 120.00246 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99924 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47251 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47148 * 120.00499 * 9 7 5 12 12 H 1.48508 * 109.46802 * 239.99916 * 9 7 5 13 13 O 1.45202 * 109.46900 * 65.00099 * 3 2 1 14 14 C 1.34231 * 116.99856 * 270.00211 * 13 3 2 15 15 O 1.20832 * 119.99934 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00306 * 180.02562 * 14 13 3 17 17 C 1.53003 * 109.47372 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.46996 * 179.97438 * 17 16 14 19 19 C 1.38425 * 122.53762 * 90.00000 * 18 17 16 20 20 C 1.33390 * 114.92123 * 179.97438 * 19 18 17 21 21 S 1.75891 * 109.59251 * 0.02562 * 20 19 18 22 22 C 1.33383 * 122.54063 * 269.97274 * 18 17 16 23 23 H 1.09004 * 109.46688 * 59.99875 * 1 2 3 24 24 H 1.08996 * 109.47522 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47220 * 300.00160 * 1 2 3 26 26 H 1.09000 * 109.47220 * 239.99840 * 2 1 3 27 27 H 1.09004 * 109.46688 * 120.00125 * 2 1 3 28 28 H 0.96997 * 119.99979 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.47151 * 59.99558 * 16 14 13 30 30 H 1.09005 * 109.47314 * 299.99771 * 16 14 13 31 31 H 1.08999 * 109.47183 * 59.99774 * 17 16 14 32 32 H 1.09003 * 109.47176 * 299.99527 * 17 16 14 33 33 H 1.07997 * 122.54292 * 359.71157 * 19 18 17 34 34 H 1.08003 * 125.20243 * 179.97438 * 20 19 18 35 35 H 1.08000 * 125.20529 * 0.06732 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8887 0.6525 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8799 -1.3810 10 1 6.5988 1.5440 -0.1929 11 1 6.4962 -0.5192 -1.4626 12 1 6.4000 1.6156 -2.6091 13 8 1.6559 2.0916 1.2407 14 6 0.4728 2.7253 1.2560 15 8 -0.2188 2.7377 0.2653 16 6 0.0075 3.4225 2.5084 17 6 -1.3608 4.0601 2.2588 18 6 -1.8263 4.7567 3.5115 19 6 -1.5342 6.0833 3.7780 20 6 -2.0222 6.5458 4.9301 21 16 -2.9046 5.2659 5.7530 22 6 -2.5515 4.1419 4.4470 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 3.8293 -0.0604 -2.9502 29 1 0.7245 4.1968 2.7809 30 1 -0.0712 2.6984 3.3194 31 1 -2.0781 3.2861 1.9860 32 1 -1.2817 4.7843 1.4480 33 1 -0.9516 6.6962 3.1063 34 1 -1.8943 7.5519 5.3013 35 1 -2.8718 3.1112 4.4091 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188118590.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:11 Heat of formation + Delta-G solvation = -89.385275 kcal Electronic energy + Delta-G solvation = -17877.609044 eV Core-core repulsion = 14966.230442 eV Total energy + Delta-G solvation = -2911.378602 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.37674 -39.30421 -37.64137 -35.48290 -33.94705 -33.25727 -30.22324 -29.28212 -26.72743 -25.11711 -23.63275 -22.26528 -21.11352 -19.61914 -18.88956 -18.59891 -18.23316 -17.26473 -17.14334 -16.32572 -15.99046 -15.18976 -14.84128 -14.67971 -14.16581 -13.91864 -13.83194 -13.37238 -13.28996 -13.23530 -13.11509 -12.92764 -12.78694 -12.75121 -12.51664 -12.12869 -11.98892 -11.74846 -11.63047 -11.41414 -11.19496 -10.80173 -10.51886 -9.68265 -9.25259 -8.27136 -6.43875 0.12289 0.80669 1.10525 1.41583 1.42095 1.44582 1.56226 1.72606 2.17353 2.46041 3.02399 3.84349 3.96429 4.10668 4.23584 4.32528 4.38337 4.41074 4.52758 4.61518 4.65731 4.70026 4.85987 4.86351 5.09427 5.11776 5.18923 5.23025 5.41408 5.51430 5.53436 5.61382 5.68709 6.00860 6.17984 6.62076 7.05211 7.28891 8.79716 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.036583 B = 0.003586 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.203941 B = 7806.433769 C = 8224.238311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.224 3.776 4 H 0.007 0.993 5 C -0.550 4.550 6 H 0.065 0.935 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.980 3.020 10 H -0.264 1.264 11 H -0.272 1.272 12 H -0.276 1.276 13 O -0.368 6.368 14 C 0.444 3.556 15 O -0.545 6.545 16 C -0.096 4.096 17 C -0.040 4.040 18 C -0.107 4.107 19 C -0.145 4.145 20 C -0.210 4.210 21 S 0.102 5.898 22 C -0.217 4.217 23 H 0.035 0.965 24 H 0.060 0.940 25 H 0.039 0.961 26 H 0.085 0.915 27 H 0.045 0.955 28 H 0.270 0.730 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.149 0.851 34 H 0.186 0.814 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.400 8.861 14.712 20.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.169 4.169 3 C 0.171 3.829 4 H 0.024 0.976 5 C -0.588 4.588 6 H 0.083 0.917 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.804 3.196 10 H -0.188 1.188 11 H -0.197 1.197 12 H -0.201 1.201 13 O -0.284 6.284 14 C 0.289 3.711 15 O -0.436 6.436 16 C -0.134 4.134 17 C -0.080 4.080 18 C -0.120 4.120 19 C -0.175 4.175 20 C -0.346 4.346 21 S 0.365 5.635 22 C -0.352 4.352 23 H 0.054 0.946 24 H 0.079 0.921 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.167 0.833 34 H 0.203 0.797 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -11.369 8.661 15.625 21.176 hybrid contribution 1.525 -0.093 -2.016 2.530 sum -9.844 8.567 13.609 18.855 Atomic orbital electron populations 1.21707 0.96147 1.00571 1.00205 1.21864 0.94603 0.98138 1.02248 1.20342 0.94446 0.89326 0.78833 0.97559 1.21386 0.90711 1.39833 1.06837 0.91709 1.25804 1.04220 0.93904 0.94387 1.70022 1.37341 1.38039 1.09854 0.85170 0.77772 0.78312 0.78362 1.18812 1.19692 1.20149 1.86469 1.36421 1.63154 1.42398 1.24457 0.79320 0.76131 0.91228 1.90594 1.55889 1.59484 1.37678 1.21413 0.98536 1.01015 0.92449 1.19981 0.94300 0.99443 0.94286 1.18873 1.01085 0.94701 0.97327 1.20311 1.03334 0.95276 0.98578 1.25907 1.05160 1.04154 0.99339 1.84182 1.53816 1.02520 1.22957 1.25745 1.06622 1.04588 0.98287 0.94616 0.92071 0.94153 0.89699 0.93625 0.92070 0.86500 0.86290 0.90701 0.90800 0.83308 0.79674 0.80785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.65 8.57 71.98 0.62 -5.03 16 2 C -0.13 -6.61 5.49 30.59 0.17 -6.44 16 3 C 0.22 12.25 2.25 29.85 0.07 12.32 16 4 H 0.01 0.41 7.16 -2.39 -0.02 0.39 16 5 C -0.55 -31.45 8.90 25.60 0.23 -31.22 16 6 H 0.06 3.65 7.81 -2.91 -0.02 3.62 16 7 C 0.02 0.91 5.29 84.65 0.45 1.36 16 8 N -0.91 -52.56 11.30 21.45 0.24 -52.32 16 9 Si 0.98 43.03 29.54 68.60 2.03 45.05 16 10 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 12 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 13 O -0.37 -17.58 9.81 -51.43 -0.50 -18.08 16 14 C 0.44 17.93 6.41 71.23 0.46 18.39 16 15 O -0.55 -24.95 13.13 21.95 0.29 -24.66 16 16 C -0.10 -2.64 5.79 29.85 0.17 -2.46 16 17 C -0.04 -0.99 4.76 29.85 0.14 -0.85 16 18 C -0.11 -2.24 5.06 -20.92 -0.11 -2.35 16 19 C -0.14 -2.71 9.98 21.22 0.21 -2.50 16 20 C -0.21 -3.33 11.23 66.72 0.75 -2.58 16 21 S 0.10 1.62 23.34 -56.49 -1.32 0.31 16 22 C -0.22 -4.07 10.98 66.72 0.73 -3.33 16 23 H 0.03 1.66 7.80 -2.38 -0.02 1.64 16 24 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.04 1.66 6.06 -2.39 -0.01 1.65 16 26 H 0.08 4.71 5.95 -2.39 -0.01 4.69 16 27 H 0.04 2.22 8.14 -2.38 -0.02 2.20 16 28 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.12 2.79 8.14 -2.38 -0.02 2.77 16 31 H 0.07 1.93 8.08 -2.39 -0.02 1.91 16 32 H 0.07 1.94 8.09 -2.39 -0.02 1.92 16 33 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.19 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.17 2.79 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -65.70 309.11 5.70 -60.00 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 1.08 Total: 14.40 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: 3.89 Total: -24.69 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.24 Total: -52.32 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -0.22 Total: -42.75 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -1.32 Total: 0.31 kcal Total: -65.70 5.70 -60.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188118590.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.384 kcal (2) G-P(sol) polarization free energy of solvation -65.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds