Wall clock time and date at job start Mon Mar 30 2020 08:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86300 * 109.47273 * 2 1 4 4 C 1.86300 * 109.47024 * 240.00455 * 2 1 3 5 5 O 1.63095 * 109.47131 * 120.00516 * 2 1 3 6 6 C 1.42898 * 114.00298 * 62.85539 * 5 2 1 7 7 C 1.50698 * 109.47463 * 216.58370 * 6 5 2 8 8 N 1.27941 * 120.00094 * 254.60346 * 7 6 5 9 9 Si 1.86800 * 120.00001 * 74.59587 * 7 6 5 10 10 H 1.48496 * 109.47202 * 5.08937 * 9 7 6 11 11 H 1.48506 * 109.46869 * 125.08486 * 9 7 6 12 12 H 1.48499 * 109.47435 * 245.08551 * 9 7 6 13 13 C 1.50702 * 109.47071 * 96.58213 * 6 5 2 14 14 C 1.38253 * 119.92579 * 39.99977 * 13 6 5 15 15 C 1.38243 * 120.14651 * 179.97438 * 14 13 6 16 16 C 1.38567 * 119.99833 * 0.03022 * 15 14 13 17 17 O 1.35994 * 120.07160 * 180.02562 * 16 15 14 18 18 C 1.39156 * 119.85427 * 359.97438 * 16 15 14 19 19 O 1.35988 * 120.07082 * 180.02562 * 18 16 15 20 20 C 1.38244 * 119.92689 * 219.72387 * 13 6 5 21 21 H 1.09005 * 109.47082 * 294.74812 * 1 2 3 22 22 H 1.08998 * 109.47068 * 54.74535 * 1 2 3 23 23 H 1.09000 * 109.47395 * 174.74743 * 1 2 3 24 24 H 1.08998 * 109.47233 * 180.02562 * 3 2 1 25 25 H 1.08996 * 109.47635 * 300.00651 * 3 2 1 26 26 H 1.09000 * 109.46862 * 60.00280 * 3 2 1 27 27 H 1.09001 * 109.47006 * 300.00225 * 4 2 1 28 28 H 1.09001 * 109.47403 * 59.99427 * 4 2 1 29 29 H 1.08998 * 109.47171 * 179.97438 * 4 2 1 30 30 H 1.08998 * 109.46894 * 336.58681 * 6 5 2 31 31 H 0.97006 * 120.00172 * 359.97438 * 8 7 6 32 32 H 1.07997 * 119.93101 * 359.97438 * 14 13 6 33 33 H 1.08000 * 120.00182 * 180.02562 * 15 14 13 34 34 H 0.96703 * 113.99536 * 90.00387 * 17 16 15 35 35 H 0.96708 * 114.00378 * 89.99872 * 19 18 16 36 36 H 1.08000 * 119.99938 * 0.02562 * 20 13 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8781 -1.5212 5 8 2.4066 -0.7690 1.3316 6 6 2.0389 -2.1482 1.3972 7 6 1.7462 -2.5227 2.8273 8 7 2.5868 -3.2236 3.4899 9 14 0.1562 -1.9633 3.6326 10 1 -0.6938 -1.2777 2.6263 11 1 -0.5677 -3.1430 4.1707 12 1 0.4661 -1.0247 4.7408 13 6 3.1719 -2.9954 0.8779 14 6 4.4777 -2.6702 1.1947 15 6 5.5205 -3.4445 0.7212 16 6 5.2581 -4.5490 -0.0732 17 8 6.2827 -5.3121 -0.5394 18 6 3.9437 -4.8763 -0.3922 19 8 3.6811 -5.9597 -1.1711 20 6 2.9028 -4.0994 0.0905 21 1 -0.3633 0.4302 0.9333 22 1 -0.3633 0.5932 -0.8392 23 1 -0.3634 -1.0233 -0.0941 24 1 3.5740 1.7564 -0.0005 25 1 2.1207 2.2704 -0.8899 26 1 2.1207 2.2702 0.8900 27 1 2.1206 -1.9058 -1.5213 28 1 2.1206 -0.3643 -2.4112 29 1 3.5739 -0.8777 -1.5215 30 1 1.1506 -2.3167 0.7884 31 1 3.4124 -3.5143 3.0717 32 1 4.6837 -1.8093 1.8134 33 1 6.5397 -3.1885 0.9705 34 1 6.5295 -6.0400 0.0474 35 1 3.5563 -6.7802 -0.6747 36 1 1.8816 -4.3537 -0.1521 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203407848.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:14:16 Heat of formation + Delta-G solvation = -122.336501 kcal Electronic energy + Delta-G solvation = -19263.568776 eV Core-core repulsion = 16257.559139 eV Total energy + Delta-G solvation = -3006.009637 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.104 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.59188 -39.64126 -37.99963 -36.98168 -35.77516 -31.91466 -30.57379 -29.61073 -28.69556 -28.42630 -27.34542 -24.06439 -23.45755 -21.41116 -19.85883 -18.91589 -18.29606 -17.60919 -17.39527 -16.83118 -16.37842 -15.84712 -15.65900 -14.85016 -14.38828 -14.32447 -14.03502 -13.97730 -13.86065 -13.55006 -13.35264 -13.31636 -13.15567 -13.10081 -13.07052 -12.91691 -12.57912 -12.30850 -12.05777 -11.81299 -11.49931 -11.26970 -10.81762 -10.58976 -10.23589 -9.91303 -9.64638 -0.11875 0.06220 0.64987 1.17228 1.44334 1.55291 1.78232 1.87475 1.94226 1.95679 2.30724 2.42273 2.94905 3.04092 3.51175 3.63239 3.77572 3.88825 4.13381 4.24278 4.54479 4.63331 4.63847 4.66446 4.69767 4.71387 4.73570 4.74624 4.82522 4.94913 5.02268 5.17328 5.37308 5.44774 5.51766 5.52887 5.57112 6.31547 6.69746 6.80542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.512 4.512 2 Si 1.249 2.751 3 C -0.465 4.465 4 C -0.505 4.505 5 O -0.607 6.607 6 C 0.136 3.864 7 C -0.026 4.026 8 N -0.608 5.608 9 Si 1.058 2.942 10 H -0.242 1.242 11 H -0.246 1.246 12 H -0.241 1.241 13 C -0.121 4.121 14 C -0.087 4.087 15 C -0.131 4.131 16 C 0.091 3.909 17 O -0.487 6.487 18 C 0.082 3.918 19 O -0.486 6.486 20 C -0.116 4.116 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.329 0.671 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.390 0.610 35 H 0.389 0.611 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.842 -0.543 1.406 2.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.614 4.614 2 Si 1.387 2.613 3 C -0.572 4.572 4 C -0.607 4.607 5 O -0.564 6.564 6 C 0.077 3.923 7 C -0.272 4.272 8 N -0.224 5.224 9 Si 0.870 3.130 10 H -0.164 1.164 11 H -0.169 1.169 12 H -0.164 1.164 13 C -0.122 4.122 14 C -0.106 4.106 15 C -0.149 4.149 16 C 0.046 3.954 17 O -0.297 6.297 18 C 0.037 3.963 19 O -0.296 6.296 20 C -0.134 4.134 21 H 0.094 0.906 22 H 0.095 0.905 23 H 0.087 0.913 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.150 0.850 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.247 0.753 35 H 0.245 0.755 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.339 0.109 2.040 3.105 hybrid contribution 1.051 -0.754 -1.218 1.777 sum -1.288 -0.645 0.822 1.658 Atomic orbital electron populations 1.27025 1.24593 1.04645 1.05127 0.77365 0.63780 0.64689 0.55511 1.26279 1.06905 1.19054 1.04926 1.26999 1.06944 1.08611 1.18194 1.85439 1.80799 1.23698 1.66482 1.20631 0.94116 0.80291 0.97294 1.31950 1.07222 0.94532 0.93529 1.69304 1.06367 1.07595 1.39176 0.83714 0.69682 0.80209 0.79353 1.16428 1.16932 1.16386 1.20091 0.95584 0.96867 0.99665 1.21014 0.91098 0.99270 0.99175 1.21464 1.00535 0.95514 0.97434 1.18922 0.86647 0.94030 0.95833 1.84926 1.50408 1.45681 1.48723 1.18722 0.91057 0.91430 0.95094 1.84945 1.92887 1.17770 1.33959 1.21234 0.99641 0.95567 0.96993 0.90564 0.90468 0.91279 0.90779 0.90419 0.90625 0.91435 0.90892 0.91088 0.89617 0.85046 0.84169 0.84385 0.75321 0.75473 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 0.80 8.60 101.05 0.87 1.66 16 2 Si 1.25 -2.07 12.60 -169.99 -2.14 -4.21 16 3 C -0.47 0.50 8.65 101.05 0.87 1.37 16 4 C -0.51 0.09 8.20 101.05 0.83 0.92 16 5 O -0.61 0.24 7.44 -35.23 -0.26 -0.02 16 6 C 0.14 -0.07 1.72 -29.04 -0.05 -0.12 16 7 C -0.03 0.00 5.29 -13.90 -0.07 -0.08 16 8 N -0.61 -0.89 13.35 56.23 0.75 -0.14 16 9 Si 1.06 -1.02 29.96 -169.99 -5.09 -6.11 16 10 H -0.24 0.53 7.11 56.52 0.40 0.94 16 11 H -0.25 0.12 7.11 56.52 0.40 0.52 16 12 H -0.24 0.02 7.11 56.52 0.40 0.42 16 13 C -0.12 -0.01 3.06 -104.61 -0.32 -0.33 16 14 C -0.09 -0.02 7.83 -39.57 -0.31 -0.33 16 15 C -0.13 -0.04 9.98 -39.46 -0.39 -0.44 16 16 C 0.09 0.11 6.72 -39.12 -0.26 -0.15 16 17 O -0.49 -0.48 13.29 -34.23 -0.45 -0.94 16 18 C 0.08 0.09 6.72 -39.12 -0.26 -0.17 16 19 O -0.49 -0.41 13.29 -34.21 -0.45 -0.86 16 20 C -0.12 -0.01 9.30 -39.46 -0.37 -0.38 16 21 H 0.08 -0.12 7.96 -51.93 -0.41 -0.53 16 22 H 0.08 -0.14 7.96 -51.93 -0.41 -0.55 16 23 H 0.07 -0.14 7.39 -51.93 -0.38 -0.53 16 24 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 25 H 0.08 -0.12 7.96 -51.93 -0.41 -0.54 16 26 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 27 H 0.07 0.01 7.43 -51.93 -0.39 -0.38 16 28 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 29 H 0.07 0.06 7.96 -51.93 -0.41 -0.35 16 30 H 0.09 -0.24 6.07 -51.93 -0.32 -0.56 16 31 H 0.33 0.29 5.86 -40.82 -0.24 0.05 16 32 H 0.14 -0.04 7.77 -52.49 -0.41 -0.45 16 33 H 0.14 -0.14 8.06 -52.49 -0.42 -0.56 16 34 H 0.39 -1.56 9.06 45.56 0.41 -1.15 16 35 H 0.39 -1.58 9.07 45.56 0.41 -1.17 16 36 H 0.14 -0.22 8.04 -52.49 -0.42 -0.64 16 LS Contribution 311.82 15.07 4.70 4.70 Total: 0.00 -6.64 311.82 -5.87 -12.51 By element: Atomic # 1 Polarization: -3.45 SS G_CDS: -3.44 Total: -6.89 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 0.53 Total: 1.97 kcal Atomic # 7 Polarization: -0.89 SS G_CDS: 0.75 Total: -0.14 kcal Atomic # 8 Polarization: -0.65 SS G_CDS: -1.17 Total: -1.82 kcal Atomic # 14 Polarization: -3.08 SS G_CDS: -7.23 Total: -10.32 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -6.64 -5.87 -12.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203407848.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.830 kcal (2) G-P(sol) polarization free energy of solvation -6.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds