Wall clock time and date at job start Mon Mar 30 2020 08:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86300 * 109.47273 * 2 1 4 4 C 1.86300 * 109.47024 * 240.00455 * 2 1 3 5 5 O 1.63095 * 109.47131 * 120.00516 * 2 1 3 6 6 C 1.42898 * 114.00298 * 62.85539 * 5 2 1 7 7 C 1.50698 * 109.47463 * 216.58370 * 6 5 2 8 8 N 1.27941 * 120.00094 * 254.60346 * 7 6 5 9 9 Si 1.86800 * 120.00001 * 74.59587 * 7 6 5 10 10 H 1.48496 * 109.47202 * 5.08937 * 9 7 6 11 11 H 1.48506 * 109.46869 * 125.08486 * 9 7 6 12 12 H 1.48499 * 109.47435 * 245.08551 * 9 7 6 13 13 C 1.50702 * 109.47071 * 96.58213 * 6 5 2 14 14 C 1.38253 * 119.92579 * 39.99977 * 13 6 5 15 15 C 1.38243 * 120.14651 * 179.97438 * 14 13 6 16 16 C 1.38567 * 119.99833 * 0.03022 * 15 14 13 17 17 O 1.35994 * 120.07160 * 180.02562 * 16 15 14 18 18 C 1.39156 * 119.85427 * 359.97438 * 16 15 14 19 19 O 1.35988 * 120.07082 * 180.02562 * 18 16 15 20 20 C 1.38244 * 119.92689 * 219.72387 * 13 6 5 21 21 H 1.09005 * 109.47082 * 294.74812 * 1 2 3 22 22 H 1.08998 * 109.47068 * 54.74535 * 1 2 3 23 23 H 1.09000 * 109.47395 * 174.74743 * 1 2 3 24 24 H 1.08998 * 109.47233 * 180.02562 * 3 2 1 25 25 H 1.08996 * 109.47635 * 300.00651 * 3 2 1 26 26 H 1.09000 * 109.46862 * 60.00280 * 3 2 1 27 27 H 1.09001 * 109.47006 * 300.00225 * 4 2 1 28 28 H 1.09001 * 109.47403 * 59.99427 * 4 2 1 29 29 H 1.08998 * 109.47171 * 179.97438 * 4 2 1 30 30 H 1.08998 * 109.46894 * 336.58681 * 6 5 2 31 31 H 0.97006 * 120.00172 * 359.97438 * 8 7 6 32 32 H 1.07997 * 119.93101 * 359.97438 * 14 13 6 33 33 H 1.08000 * 120.00182 * 180.02562 * 15 14 13 34 34 H 0.96703 * 113.99536 * 90.00387 * 17 16 15 35 35 H 0.96708 * 114.00378 * 89.99872 * 19 18 16 36 36 H 1.08000 * 119.99938 * 0.02562 * 20 13 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8781 -1.5212 5 8 2.4066 -0.7690 1.3316 6 6 2.0389 -2.1482 1.3972 7 6 1.7462 -2.5227 2.8273 8 7 2.5868 -3.2236 3.4899 9 14 0.1562 -1.9633 3.6326 10 1 -0.6938 -1.2777 2.6263 11 1 -0.5677 -3.1430 4.1707 12 1 0.4661 -1.0247 4.7408 13 6 3.1719 -2.9954 0.8779 14 6 4.4777 -2.6702 1.1947 15 6 5.5205 -3.4445 0.7212 16 6 5.2581 -4.5490 -0.0732 17 8 6.2827 -5.3121 -0.5394 18 6 3.9437 -4.8763 -0.3922 19 8 3.6811 -5.9597 -1.1711 20 6 2.9028 -4.0994 0.0905 21 1 -0.3633 0.4302 0.9333 22 1 -0.3633 0.5932 -0.8392 23 1 -0.3634 -1.0233 -0.0941 24 1 3.5740 1.7564 -0.0005 25 1 2.1207 2.2704 -0.8899 26 1 2.1207 2.2702 0.8900 27 1 2.1206 -1.9058 -1.5213 28 1 2.1206 -0.3643 -2.4112 29 1 3.5739 -0.8777 -1.5215 30 1 1.1506 -2.3167 0.7884 31 1 3.4124 -3.5143 3.0717 32 1 4.6837 -1.8093 1.8134 33 1 6.5397 -3.1885 0.9705 34 1 6.5295 -6.0400 0.0474 35 1 3.5563 -6.7802 -0.6747 36 1 1.8816 -4.3537 -0.1521 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203407848.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:14:16 Heat of formation + Delta-G solvation = -118.777069 kcal Electronic energy + Delta-G solvation = -19263.414428 eV Core-core repulsion = 16257.559139 eV Total energy + Delta-G solvation = -3005.855288 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.104 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.56635 -39.60840 -38.00242 -36.95147 -35.76703 -31.89250 -30.56156 -29.50370 -28.56889 -28.35739 -27.30088 -24.04562 -23.45684 -21.38913 -19.85911 -18.89441 -18.23555 -17.57606 -17.37094 -16.79807 -16.35475 -15.82048 -15.60703 -14.81376 -14.29315 -14.25681 -13.97136 -13.90050 -13.78361 -13.48636 -13.28337 -13.24132 -13.10311 -13.03135 -12.99777 -12.88935 -12.54562 -12.22811 -11.92186 -11.73462 -11.49743 -11.24537 -10.73086 -10.50260 -10.20713 -9.89274 -9.63885 -0.09839 0.08218 0.68978 1.23801 1.55105 1.66786 1.90670 1.95945 2.03542 2.09537 2.34788 2.51871 2.99822 3.12996 3.56119 3.71610 3.81548 3.98513 4.16673 4.27923 4.61206 4.70227 4.72825 4.74879 4.79361 4.80033 4.83710 4.85290 4.87192 4.99289 5.07505 5.18197 5.43585 5.53192 5.58655 5.63674 5.67451 6.51239 6.81563 6.84038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.518 4.518 2 Si 1.286 2.714 3 C -0.478 4.478 4 C -0.516 4.516 5 O -0.616 6.616 6 C 0.128 3.872 7 C -0.025 4.025 8 N -0.632 5.632 9 Si 1.072 2.928 10 H -0.215 1.215 11 H -0.254 1.254 12 H -0.257 1.257 13 C -0.122 4.122 14 C -0.093 4.093 15 C -0.136 4.136 16 C 0.078 3.922 17 O -0.504 6.504 18 C 0.072 3.928 19 O -0.502 6.502 20 C -0.119 4.119 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.112 0.888 31 H 0.328 0.672 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.409 0.591 35 H 0.408 0.592 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.887 -0.362 1.271 3.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.621 4.621 2 Si 1.422 2.578 3 C -0.583 4.583 4 C -0.617 4.617 5 O -0.573 6.573 6 C 0.069 3.931 7 C -0.270 4.270 8 N -0.249 5.249 9 Si 0.883 3.117 10 H -0.136 1.136 11 H -0.178 1.178 12 H -0.181 1.181 13 C -0.123 4.123 14 C -0.111 4.111 15 C -0.155 4.155 16 C 0.033 3.967 17 O -0.317 6.317 18 C 0.027 3.973 19 O -0.314 6.314 20 C -0.137 4.137 21 H 0.098 0.902 22 H 0.099 0.901 23 H 0.096 0.904 24 H 0.086 0.914 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.129 0.871 31 H 0.149 0.851 32 H 0.160 0.840 33 H 0.164 0.836 34 H 0.268 0.732 35 H 0.267 0.733 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.366 0.271 1.890 3.870 hybrid contribution 1.418 -0.836 -1.172 2.020 sum -1.948 -0.565 0.719 2.152 Atomic orbital electron populations 1.27049 1.24087 1.05415 1.05526 0.76731 0.63676 0.63437 0.53997 1.26421 1.06588 1.20048 1.05272 1.27183 1.06027 1.08890 1.19553 1.85427 1.81157 1.23759 1.67002 1.20810 0.94855 0.80139 0.97321 1.32306 1.07284 0.93569 0.93850 1.69340 1.06880 1.08860 1.39797 0.83604 0.69226 0.79576 0.79306 1.13629 1.17816 1.18082 1.20202 0.95735 0.96925 0.99446 1.21096 0.91384 0.99367 0.99259 1.21583 1.01090 0.95384 0.97433 1.19076 0.86870 0.94481 0.96313 1.84865 1.50464 1.46552 1.49847 1.18868 0.91322 0.91857 0.95303 1.84883 1.92901 1.18720 1.34933 1.21409 1.00262 0.95311 0.96764 0.90198 0.90100 0.90367 0.91443 0.89929 0.90454 0.91637 0.90706 0.92544 0.87050 0.85123 0.84040 0.83573 0.73222 0.73340 0.82871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.52 2.52 8.60 113.37 0.97 3.49 16 2 Si 1.29 -5.03 12.60 68.60 0.86 -4.16 16 3 C -0.48 1.06 8.65 113.37 0.98 2.04 16 4 C -0.52 0.14 8.20 113.37 0.93 1.07 16 5 O -0.62 0.76 7.44 -148.98 -1.11 -0.35 16 6 C 0.13 -0.21 1.72 29.10 0.05 -0.16 16 7 C -0.03 0.00 5.29 88.67 0.47 0.47 16 8 N -0.63 -2.12 13.35 24.11 0.32 -1.80 16 9 Si 1.07 -2.82 29.96 68.60 2.06 -0.77 16 10 H -0.21 1.46 7.11 99.48 0.71 2.17 16 11 H -0.25 0.33 7.11 99.48 0.71 1.03 16 12 H -0.26 0.00 7.11 99.48 0.71 0.71 16 13 C -0.12 -0.03 3.06 -19.86 -0.06 -0.09 16 14 C -0.09 -0.11 7.83 22.27 0.17 0.07 16 15 C -0.14 -0.21 9.98 22.35 0.22 0.01 16 16 C 0.08 0.25 6.72 22.57 0.15 0.41 16 17 O -0.50 -1.37 13.29 -79.62 -1.06 -2.42 16 18 C 0.07 0.19 6.72 22.57 0.15 0.35 16 19 O -0.50 -0.96 13.29 -79.55 -1.06 -2.02 16 20 C -0.12 -0.02 9.30 22.35 0.21 0.19 16 21 H 0.08 -0.41 7.96 -2.38 -0.02 -0.43 16 22 H 0.08 -0.42 7.96 -2.39 -0.02 -0.44 16 23 H 0.08 -0.50 7.39 -2.39 -0.02 -0.52 16 24 H 0.07 -0.06 7.96 -2.39 -0.02 -0.08 16 25 H 0.08 -0.28 7.96 -2.39 -0.02 -0.30 16 26 H 0.08 -0.20 7.96 -2.39 -0.02 -0.22 16 27 H 0.06 0.00 7.43 -2.39 -0.02 -0.02 16 28 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 29 H 0.06 0.15 7.96 -2.39 -0.02 0.13 16 30 H 0.11 -0.80 6.07 -2.39 -0.01 -0.82 16 31 H 0.33 0.84 5.86 -92.70 -0.54 0.30 16 32 H 0.14 0.04 7.77 -2.91 -0.02 0.02 16 33 H 0.15 -0.16 8.06 -2.91 -0.02 -0.18 16 34 H 0.41 -3.00 9.06 -74.06 -0.67 -3.67 16 35 H 0.41 -3.25 9.07 -74.05 -0.67 -3.93 16 36 H 0.15 -0.61 8.04 -2.91 -0.02 -0.63 16 Total: 0.00 -14.90 311.82 4.25 -10.65 By element: Atomic # 1 Polarization: -6.94 SS G_CDS: -0.02 Total: -6.96 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 4.25 Total: 7.83 kcal Atomic # 7 Polarization: -2.12 SS G_CDS: 0.32 Total: -1.80 kcal Atomic # 8 Polarization: -1.57 SS G_CDS: -3.22 Total: -4.80 kcal Atomic # 14 Polarization: -7.85 SS G_CDS: 2.92 Total: -4.93 kcal Total: -14.90 4.25 -10.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203407848.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.131 kcal (2) G-P(sol) polarization free energy of solvation -14.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds