Wall clock time and date at job start Mon Mar 30 2020 06:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35955 * 117.00029 * 2 1 4 4 C 1.38251 * 120.01326 * 0.02562 * 3 2 1 5 5 C 1.39589 * 119.86676 * 179.97438 * 4 3 2 6 6 C 1.47726 * 120.04733 * 179.97438 * 5 4 3 7 7 C 1.32645 * 120.00348 * 215.99592 * 6 5 4 8 8 C 1.50703 * 119.99598 * 8.40570 * 7 6 5 9 9 Cl 1.80301 * 109.46866 * 127.19884 * 8 7 6 10 10 C 1.39653 * 119.90254 * 0.02562 * 5 4 3 11 11 C 1.37836 * 120.02623 * 359.97438 * 10 5 4 12 12 C 1.38908 * 120.13467 * 0.25721 * 11 10 5 13 13 O 1.35719 * 119.95429 * 179.72029 * 12 11 10 14 14 C 1.34798 * 116.99862 * 354.52334 * 13 12 11 15 15 H 1.08001 * 119.99730 * 5.07575 * 14 13 12 16 16 C 1.38630 * 120.00102 * 185.06952 * 14 13 12 17 17 N 1.31577 * 119.99941 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99988 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46972 * 60.00737 * 18 16 14 20 20 H 1.48505 * 109.46992 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47115 * 300.00254 * 18 16 14 22 22 H 1.08998 * 109.46889 * 299.99773 * 1 2 3 23 23 H 1.09000 * 109.47154 * 59.99758 * 1 2 3 24 24 H 1.09004 * 109.47019 * 179.97438 * 1 2 3 25 25 H 1.07998 * 120.06562 * 359.97438 * 4 3 2 26 26 H 1.08008 * 119.99701 * 35.99761 * 6 5 4 27 27 H 1.07993 * 120.00320 * 188.40816 * 7 6 5 28 28 H 1.08996 * 109.47455 * 247.19777 * 8 7 6 29 29 H 1.08998 * 109.47337 * 7.20319 * 8 7 6 30 30 H 1.07997 * 119.98599 * 180.02562 * 10 5 4 31 31 H 1.08005 * 119.93027 * 179.97438 * 11 10 5 32 32 H 0.96999 * 119.99937 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2935 2.3710 0.0005 5 6 1.9304 3.6131 0.0011 6 6 1.1301 4.8548 0.0011 7 6 1.5521 5.9160 -0.6736 8 6 2.7426 5.8013 -1.5905 9 17 2.3047 6.4245 -3.2247 10 6 3.3254 3.6803 0.0005 11 6 4.0717 2.5214 0.0000 12 6 3.4392 1.2847 -0.0054 13 8 4.1777 0.1460 -0.0116 14 6 5.5136 0.2836 -0.1269 15 1 5.9570 1.2684 -0.1265 16 6 6.3184 -0.8389 -0.2459 17 7 5.7782 -2.0386 -0.2468 18 14 8.1698 -0.6481 -0.4049 19 1 8.7005 0.0481 0.7946 20 1 8.7977 -1.9892 -0.5176 21 1 8.4830 0.1481 -1.6185 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2150 2.3160 0.0005 26 1 0.2012 4.8985 0.5505 27 1 1.0426 6.8621 -0.5659 28 1 3.5691 6.3868 -1.1879 29 1 3.0419 4.7561 -1.6685 30 1 3.8195 4.6406 0.0014 31 1 5.1504 2.5752 -0.0008 32 1 6.3412 -2.8240 -0.3304 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211980488.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:11 Heat of formation + Delta-G solvation = -28.587937 kcal Electronic energy + Delta-G solvation = -17720.752380 eV Core-core repulsion = 14674.133348 eV Total energy + Delta-G solvation = -3046.619032 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.76433 -37.61703 -37.23333 -35.71312 -33.73845 -32.29434 -29.94070 -28.89867 -26.83114 -26.30699 -25.37544 -21.77238 -21.60937 -19.21326 -18.12410 -17.26776 -16.40360 -15.67178 -15.24066 -14.98149 -14.68073 -14.25874 -14.13624 -13.66993 -13.51384 -13.40354 -12.73787 -12.40290 -12.21460 -11.76853 -11.60812 -11.39822 -11.13114 -11.00475 -10.76298 -10.63962 -10.46929 -10.28077 -10.03829 -9.55086 -9.26374 -8.78853 -7.95198 -6.92821 -6.53081 -4.07690 1.42713 2.06694 2.34962 2.99415 3.09095 3.12999 3.13532 3.89083 3.94599 4.40232 4.85706 4.96269 5.05963 5.09133 5.24600 5.43178 5.52315 5.53562 5.56273 5.59785 5.80735 5.87919 6.09111 6.22560 6.45236 6.49860 6.65086 6.87707 7.02366 7.12810 7.22931 7.48889 7.86485 8.08608 8.90295 9.59246 10.63272 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.016520 B = 0.005605 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.502378 B = 4993.896866 C = 6236.586247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.303 6.303 3 C 0.058 3.942 4 C -0.147 4.147 5 C -0.147 4.147 6 C -0.057 4.057 7 C -0.203 4.203 8 C -0.005 4.005 9 Cl -0.203 7.203 10 C -0.085 4.085 11 C -0.219 4.219 12 C 0.141 3.859 13 O -0.154 6.154 14 C -0.392 4.392 15 H 0.094 0.906 16 C 0.041 3.959 17 N -0.851 5.851 18 Si 0.943 3.057 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.268 1.268 22 H 0.046 0.954 23 H 0.047 0.953 24 H 0.092 0.908 25 H 0.121 0.879 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.092 0.908 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.137 0.863 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.893 11.013 0.032 12.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.217 6.217 3 C 0.013 3.987 4 C -0.167 4.167 5 C -0.148 4.148 6 C -0.076 4.076 7 C -0.222 4.222 8 C -0.066 4.066 9 Cl -0.176 7.176 10 C -0.103 4.103 11 C -0.239 4.239 12 C 0.085 3.915 13 O -0.056 6.056 14 C -0.468 4.468 15 H 0.112 0.888 16 C -0.165 4.165 17 N -0.484 5.484 18 Si 0.767 3.233 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.193 1.193 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.110 0.890 25 H 0.139 0.861 26 H 0.133 0.867 27 H 0.135 0.865 28 H 0.111 0.889 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.154 0.846 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.793 10.331 -0.095 12.364 hybrid contribution 0.579 0.377 -0.074 0.695 sum -6.214 10.708 -0.169 12.382 Atomic orbital electron populations 1.22907 0.80260 1.03027 1.00323 1.86244 1.19509 1.26307 1.89595 1.18122 0.89459 0.84562 1.06602 1.20760 0.98509 0.90919 1.06488 1.18256 0.92669 0.91862 1.12028 1.21638 0.97218 0.91596 0.97105 1.22979 1.00295 0.98953 0.99956 1.24006 0.97444 1.03282 0.81889 1.98701 1.94922 1.90140 1.33878 1.20904 0.92443 0.97322 0.99652 1.20837 1.00677 0.90757 1.11605 1.18777 0.88285 0.87765 0.96623 1.84038 1.19534 1.25438 1.76633 1.21378 0.78478 0.94925 1.52030 0.88832 1.25349 1.00659 0.94203 0.96267 1.70062 1.36505 0.97748 1.44041 0.85756 0.80132 0.78119 0.79322 1.19354 1.20155 1.19329 0.93533 0.93486 0.88997 0.86078 0.86666 0.86466 0.88943 0.86395 0.86796 0.84565 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.44 16 2 O -0.30 -6.48 10.28 -34.20 -0.35 -6.83 16 3 C 0.06 1.24 6.70 -39.11 -0.26 0.98 16 4 C -0.15 -2.61 8.77 -39.07 -0.34 -2.95 16 5 C -0.15 -2.43 5.22 -104.99 -0.55 -2.98 16 6 C -0.06 -0.76 9.80 -37.60 -0.37 -1.13 16 7 C -0.20 -2.48 9.58 -36.20 -0.35 -2.83 16 8 C 0.00 -0.06 5.36 36.01 0.19 0.13 16 9 Cl -0.20 -2.73 29.13 -51.86 -1.51 -4.24 16 10 C -0.08 -1.46 7.28 -39.20 -0.29 -1.75 16 11 C -0.22 -4.54 9.15 -39.48 -0.36 -4.90 16 12 C 0.14 3.38 6.67 -38.87 -0.26 3.12 16 13 O -0.15 -4.39 9.53 -14.37 -0.14 -4.53 16 14 C -0.39 -10.71 9.48 30.88 0.29 -10.42 16 15 H 0.09 2.31 5.19 -52.49 -0.27 2.04 16 16 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 17 N -0.85 -24.61 13.67 55.48 0.76 -23.85 16 18 Si 0.94 19.96 29.55 -169.99 -5.02 14.93 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 22 H 0.05 0.59 7.66 -51.93 -0.40 0.20 16 23 H 0.05 0.61 7.66 -51.93 -0.40 0.22 16 24 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.12 1.79 6.29 -52.49 -0.33 1.46 16 26 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 27 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.09 1.00 7.95 -51.93 -0.41 0.59 16 29 H 0.12 1.72 4.74 -51.93 -0.25 1.47 16 30 H 0.11 1.64 6.11 -52.49 -0.32 1.32 16 31 H 0.14 2.76 5.62 -52.48 -0.29 2.47 16 32 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 290.55 15.07 4.38 4.38 Total: -1.00 -30.52 290.55 -6.35 -36.87 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -3.08 Total: 3.53 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -1.39 Total: -20.26 kcal Atomic # 7 Polarization: -24.61 SS G_CDS: 0.76 Total: -23.85 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -0.49 Total: -11.36 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 17 Polarization: -2.73 SS G_CDS: -1.51 Total: -4.24 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.52 -6.35 -36.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211980488.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.281 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds