Wall clock time and date at job start Mon Mar 30 2020 06:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35955 * 117.00029 * 2 1 4 4 C 1.38251 * 120.01326 * 0.02562 * 3 2 1 5 5 C 1.39589 * 119.86676 * 179.97438 * 4 3 2 6 6 C 1.47726 * 120.04733 * 179.97438 * 5 4 3 7 7 C 1.32645 * 120.00348 * 215.99592 * 6 5 4 8 8 C 1.50703 * 119.99598 * 8.40570 * 7 6 5 9 9 Cl 1.80301 * 109.46866 * 127.19884 * 8 7 6 10 10 C 1.39653 * 119.90254 * 0.02562 * 5 4 3 11 11 C 1.37836 * 120.02623 * 359.97438 * 10 5 4 12 12 C 1.38908 * 120.13467 * 0.25721 * 11 10 5 13 13 O 1.35719 * 119.95429 * 179.72029 * 12 11 10 14 14 C 1.34798 * 116.99862 * 354.52334 * 13 12 11 15 15 H 1.08001 * 119.99730 * 5.07575 * 14 13 12 16 16 C 1.38630 * 120.00102 * 185.06952 * 14 13 12 17 17 N 1.31577 * 119.99941 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99988 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46972 * 60.00737 * 18 16 14 20 20 H 1.48505 * 109.46992 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47115 * 300.00254 * 18 16 14 22 22 H 1.08998 * 109.46889 * 299.99773 * 1 2 3 23 23 H 1.09000 * 109.47154 * 59.99758 * 1 2 3 24 24 H 1.09004 * 109.47019 * 179.97438 * 1 2 3 25 25 H 1.07998 * 120.06562 * 359.97438 * 4 3 2 26 26 H 1.08008 * 119.99701 * 35.99761 * 6 5 4 27 27 H 1.07993 * 120.00320 * 188.40816 * 7 6 5 28 28 H 1.08996 * 109.47455 * 247.19777 * 8 7 6 29 29 H 1.08998 * 109.47337 * 7.20319 * 8 7 6 30 30 H 1.07997 * 119.98599 * 180.02562 * 10 5 4 31 31 H 1.08005 * 119.93027 * 179.97438 * 11 10 5 32 32 H 0.96999 * 119.99937 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2935 2.3710 0.0005 5 6 1.9304 3.6131 0.0011 6 6 1.1301 4.8548 0.0011 7 6 1.5521 5.9160 -0.6736 8 6 2.7426 5.8013 -1.5905 9 17 2.3047 6.4245 -3.2247 10 6 3.3254 3.6803 0.0005 11 6 4.0717 2.5214 0.0000 12 6 3.4392 1.2847 -0.0054 13 8 4.1777 0.1460 -0.0116 14 6 5.5136 0.2836 -0.1269 15 1 5.9570 1.2684 -0.1265 16 6 6.3184 -0.8389 -0.2459 17 7 5.7782 -2.0386 -0.2468 18 14 8.1698 -0.6481 -0.4049 19 1 8.7005 0.0481 0.7946 20 1 8.7977 -1.9892 -0.5176 21 1 8.4830 0.1481 -1.6185 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2150 2.3160 0.0005 26 1 0.2012 4.8985 0.5505 27 1 1.0426 6.8621 -0.5659 28 1 3.5691 6.3868 -1.1879 29 1 3.0419 4.7561 -1.6685 30 1 3.8195 4.6406 0.0014 31 1 5.1504 2.5752 -0.0008 32 1 6.3412 -2.8240 -0.3304 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211980488.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:07 Heat of formation + Delta-G solvation = -47.153730 kcal Electronic energy + Delta-G solvation = -17721.557453 eV Core-core repulsion = 14674.133348 eV Total energy + Delta-G solvation = -3047.424105 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.32792 -39.26670 -38.63055 -36.84597 -35.07885 -34.13010 -31.43095 -30.33220 -28.03391 -27.64254 -27.17220 -23.32495 -23.07680 -20.48297 -19.89187 -18.86121 -17.83525 -17.15207 -16.69392 -16.36091 -16.18626 -15.67025 -15.43973 -15.20841 -15.05870 -14.81994 -14.05891 -13.68531 -13.66203 -13.36606 -13.09413 -12.73557 -12.58334 -12.52607 -12.18414 -12.03604 -11.89533 -11.36142 -11.31280 -11.19225 -10.84548 -10.29207 -9.40986 -8.53341 -8.44773 -6.10510 0.13539 0.52767 1.11980 1.35962 1.46975 1.52541 1.90655 2.18268 2.56975 2.82100 3.13123 3.40843 3.75616 3.99209 4.06233 4.17250 4.27217 4.33078 4.42668 4.46771 4.56873 4.64507 4.70957 4.90806 4.95278 5.09438 5.26591 5.39035 5.55400 5.63054 5.86691 5.94969 6.01424 6.61959 6.98186 7.80063 8.77493 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.016520 B = 0.005605 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.502378 B = 4993.896866 C = 6236.586247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.346 6.346 3 C 0.043 3.957 4 C -0.144 4.144 5 C -0.114 4.114 6 C -0.077 4.077 7 C -0.171 4.171 8 C -0.014 4.014 9 Cl -0.206 7.206 10 C -0.090 4.090 11 C -0.214 4.214 12 C 0.088 3.912 13 O -0.219 6.219 14 C -0.415 4.415 15 H 0.106 0.894 16 C -0.023 4.023 17 N -0.918 5.918 18 Si 1.019 2.981 19 H -0.255 1.255 20 H -0.273 1.273 21 H -0.257 1.257 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.108 0.892 25 H 0.157 0.843 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.118 0.882 29 H 0.098 0.902 30 H 0.149 0.851 31 H 0.132 0.868 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.337 15.091 0.060 17.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.261 6.261 3 C -0.002 4.002 4 C -0.163 4.163 5 C -0.115 4.115 6 C -0.095 4.095 7 C -0.189 4.189 8 C -0.075 4.075 9 Cl -0.180 7.180 10 C -0.108 4.108 11 C -0.234 4.234 12 C 0.037 3.963 13 O -0.125 6.125 14 C -0.491 4.491 15 H 0.123 0.877 16 C -0.221 4.221 17 N -0.555 5.555 18 Si 0.838 3.162 19 H -0.179 1.179 20 H -0.198 1.198 21 H -0.181 1.181 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.126 0.874 25 H 0.175 0.825 26 H 0.165 0.835 27 H 0.165 0.835 28 H 0.136 0.864 29 H 0.116 0.884 30 H 0.166 0.834 31 H 0.149 0.851 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.293 14.485 -0.064 16.691 hybrid contribution 0.619 -0.434 -0.126 0.766 sum -7.674 14.051 -0.190 16.011 Atomic orbital electron populations 1.23272 0.77051 1.04922 1.02122 1.86191 1.23041 1.27061 1.89789 1.18491 0.89115 0.85928 1.06712 1.21194 1.00146 0.89925 1.05042 1.18812 0.92799 0.93173 1.06723 1.21737 0.98430 0.89867 0.99483 1.23291 0.98663 0.99496 0.97450 1.24097 0.98847 1.02683 0.81923 1.98711 1.94943 1.90053 1.34282 1.21245 0.92994 0.97379 0.99187 1.21017 1.00898 0.91037 1.10420 1.19483 0.89691 0.88102 0.99003 1.84012 1.19984 1.27658 1.80878 1.21870 0.79035 0.95754 1.52399 0.87678 1.26632 1.06052 0.93578 0.95850 1.70226 1.38421 0.98748 1.48148 0.84647 0.73271 0.78309 0.79982 1.17900 1.19804 1.18077 0.91348 0.91696 0.87393 0.82534 0.83510 0.83549 0.86431 0.88361 0.83375 0.85071 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.81 113.37 1.11 1.69 16 2 O -0.35 -15.32 10.28 -79.08 -0.81 -16.13 16 3 C 0.04 1.86 6.70 22.58 0.15 2.01 16 4 C -0.14 -4.76 8.77 22.60 0.20 -4.56 16 5 C -0.11 -3.37 5.22 -20.10 -0.10 -3.48 16 6 C -0.08 -1.60 9.80 23.61 0.23 -1.37 16 7 C -0.17 -3.14 9.58 24.52 0.23 -2.91 16 8 C -0.01 -0.29 5.36 71.24 0.38 0.09 16 9 Cl -0.21 -4.82 29.13 -2.72 -0.08 -4.90 16 10 C -0.09 -2.90 7.28 22.52 0.16 -2.73 16 11 C -0.21 -9.01 9.15 22.33 0.20 -8.80 16 12 C 0.09 4.45 6.67 22.73 0.15 4.60 16 13 O -0.22 -13.48 9.53 -8.11 -0.08 -13.56 16 14 C -0.41 -24.21 9.48 67.91 0.64 -23.57 16 15 H 0.11 5.50 5.19 -2.91 -0.02 5.49 16 16 C -0.02 -1.34 5.49 84.82 0.47 -0.87 16 17 N -0.92 -57.26 13.67 21.61 0.30 -56.96 16 18 Si 1.02 42.79 29.55 68.60 2.03 44.81 16 19 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 22 H 0.07 1.60 7.66 -2.39 -0.02 1.58 16 23 H 0.06 1.56 7.66 -2.39 -0.02 1.55 16 24 H 0.11 2.62 8.14 -2.38 -0.02 2.60 16 25 H 0.16 3.97 6.29 -2.91 -0.02 3.95 16 26 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 27 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 28 H 0.12 1.93 7.95 -2.39 -0.02 1.91 16 29 H 0.10 2.50 4.74 -2.39 -0.01 2.49 16 30 H 0.15 3.69 6.11 -2.91 -0.02 3.67 16 31 H 0.13 5.50 5.62 -2.91 -0.02 5.49 16 32 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -74.19 290.55 6.34 -67.85 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 1.15 Total: 18.79 kcal Atomic # 6 Polarization: -43.73 SS G_CDS: 3.83 Total: -39.90 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.30 Total: -56.96 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.89 Total: -29.69 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 17 Polarization: -4.82 SS G_CDS: -0.08 Total: -4.90 kcal Total: -74.19 6.34 -67.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211980488.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.695 kcal (2) G-P(sol) polarization free energy of solvation -74.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds