Wall clock time and date at job start Mon Mar 30 2020 07:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99777 * 2 1 4 4 H 1.48500 * 109.46921 * 240.00274 * 3 2 1 5 5 H 1.48506 * 109.46938 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47056 * 120.00159 * 3 2 1 7 7 C 1.37873 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47240 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46997 * 180.02562 * 10 9 7 12 12 O 1.42905 * 109.46728 * 180.02562 * 11 10 9 13 13 C 1.35905 * 116.99842 * 179.97438 * 12 11 10 14 14 C 1.38819 * 119.96806 * 359.97438 * 13 12 11 15 15 C 1.38461 * 120.22555 * 180.02562 * 14 13 12 16 16 F 1.35098 * 119.92152 * 179.97438 * 15 14 13 17 17 C 1.38238 * 120.16005 * 359.97438 * 15 14 13 18 18 C 1.39589 * 119.92977 * 0.02562 * 17 15 14 19 19 C 1.47748 * 120.10764 * 180.02562 * 18 17 15 20 20 O 1.21465 * 119.99934 * 179.97438 * 19 18 17 21 21 O 1.34709 * 120.00312 * 359.97438 * 19 18 17 22 22 C 1.38461 * 119.96797 * 179.72475 * 13 12 11 23 23 H 0.96992 * 120.00032 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47247 * 59.99954 * 9 7 2 25 25 H 1.08996 * 109.47258 * 300.00114 * 9 7 2 26 26 H 1.09000 * 109.46866 * 59.99931 * 10 9 7 27 27 H 1.09001 * 109.46611 * 300.00048 * 10 9 7 28 28 H 1.09000 * 109.47486 * 60.00167 * 11 10 9 29 29 H 1.09001 * 109.47362 * 299.99445 * 11 10 9 30 30 H 1.07993 * 119.88841 * 359.97438 * 14 13 12 31 31 H 1.08002 * 120.03147 * 179.97438 * 17 15 14 32 32 H 0.96696 * 117.00642 * 180.02562 * 21 19 18 33 33 H 1.08003 * 120.07861 * 0.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 -0.0001 12 8 2.4091 -6.0732 0.0005 13 6 1.8897 -7.3291 0.0006 14 6 0.5134 -7.5102 0.0006 15 6 -0.0216 -8.7873 0.0012 16 9 -1.3619 -8.9565 0.0018 17 6 0.8125 -9.8897 0.0013 18 6 2.1974 -9.7152 0.0012 19 6 3.0926 -10.8906 0.0007 20 8 4.2974 -10.7365 0.0002 21 8 2.5726 -12.1333 0.0008 22 6 2.7337 -8.4266 -0.0046 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8902 26 1 2.8721 -3.6043 0.8905 27 1 2.8721 -3.6042 -0.8895 28 1 0.8541 -5.0446 -0.8903 29 1 0.8535 -5.0451 0.8897 30 1 -0.1424 -6.6521 0.0010 31 1 0.3930 -10.8849 0.0022 32 1 3.1978 -12.8709 0.0008 33 1 3.8046 -8.2860 -0.0083 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223430000.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:13 Heat of formation + Delta-G solvation = -165.044371 kcal Electronic energy + Delta-G solvation = -18966.444004 eV Core-core repulsion = 15485.571402 eV Total energy + Delta-G solvation = -3480.872602 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.16163 -40.82933 -39.85582 -37.41228 -36.44274 -34.13401 -31.91857 -31.38726 -30.14869 -27.11997 -25.35960 -23.45768 -22.75921 -21.43713 -20.34326 -18.94013 -18.27807 -17.10002 -16.50722 -16.35672 -16.30559 -15.94024 -15.87511 -15.85849 -15.61938 -14.50448 -14.30685 -13.83920 -13.52659 -13.11455 -12.42914 -12.25992 -12.13183 -12.09216 -11.87600 -11.67145 -11.10131 -11.04385 -10.75423 -10.66750 -10.65096 -9.86509 -9.60670 -9.32794 -9.24162 -8.51059 -8.43241 -6.08635 -4.11752 0.21477 0.92141 2.15040 2.45713 3.26727 3.29904 3.30604 3.34321 3.37757 3.84480 4.40254 4.46650 4.64170 4.66924 4.79856 5.13162 5.27504 5.36432 5.36943 5.46256 5.65814 5.83360 5.84606 5.89949 6.07735 6.25141 6.43927 6.56604 6.88677 7.30766 7.49600 7.52714 7.63107 7.89202 8.30213 8.94170 9.53060 11.02778 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.033923 B = 0.003114 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.197393 B = 8990.430718 C = 9789.879098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.109 4.109 11 C 0.053 3.947 12 O -0.303 6.303 13 C 0.163 3.837 14 C -0.214 4.214 15 C 0.131 3.869 16 F -0.131 7.131 17 C -0.145 4.145 18 C -0.065 4.065 19 C 0.533 3.467 20 O -0.504 6.504 21 O -0.510 6.510 22 C -0.103 4.103 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.153 0.847 31 H 0.150 0.850 32 H 0.417 0.583 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.218 -22.381 -0.001 22.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.146 4.146 11 C -0.021 4.021 12 O -0.216 6.216 13 C 0.116 3.884 14 C -0.233 4.233 15 C 0.111 3.889 16 F -0.109 7.109 17 C -0.164 4.164 18 C -0.066 4.066 19 C 0.377 3.623 20 O -0.392 6.392 21 O -0.322 6.322 22 C -0.122 4.122 23 H 0.072 0.928 24 H 0.037 0.963 25 H 0.038 0.962 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.170 0.830 31 H 0.168 0.832 32 H 0.276 0.724 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.261 -21.808 -0.002 21.844 hybrid contribution 0.240 0.491 0.000 0.547 sum 1.500 -21.317 -0.001 21.369 Atomic orbital electron populations 1.69945 1.06092 1.26959 1.50437 1.25020 0.94887 0.99387 0.95091 0.86599 0.79547 0.82811 0.78730 1.20146 1.21235 1.20139 1.21132 0.93143 0.90679 1.51216 0.92443 1.19047 0.93786 0.90782 0.97594 1.21753 0.99975 0.90638 1.02266 1.23396 0.92285 0.85065 1.01316 1.86213 1.37200 1.11342 1.86861 1.18529 0.90266 0.86177 0.93450 1.21625 0.95680 0.97872 1.08134 1.17164 0.77410 0.93186 1.01106 1.91542 1.29495 1.96230 1.93671 1.21199 0.92082 0.99247 1.03893 1.18381 0.91834 0.90509 1.05905 1.20604 0.86485 0.82986 0.72269 1.90925 1.16075 1.86752 1.45489 1.84547 1.45447 1.16420 1.85749 1.20511 1.01408 0.88308 1.01942 0.92792 0.96263 0.96250 0.91946 0.91954 0.91804 0.91816 0.82984 0.83186 0.72430 0.82908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.13 5.52 -26.73 -0.15 -2.28 16 11 C 0.05 0.86 4.74 37.16 0.18 1.03 16 12 O -0.30 -4.68 10.13 -19.44 -0.20 -4.88 16 13 C 0.16 2.17 6.68 -39.28 -0.26 1.91 16 14 C -0.21 -2.62 9.01 -39.28 -0.35 -2.97 16 15 C 0.13 1.48 7.29 -39.50 -0.29 1.20 16 16 F -0.13 -1.53 17.26 2.25 0.04 -1.49 16 17 C -0.14 -1.46 9.59 -39.08 -0.37 -1.83 16 18 C -0.06 -0.70 5.87 -105.01 -0.62 -1.32 16 19 C 0.53 5.41 8.27 34.62 0.29 5.69 16 20 O -0.50 -6.49 17.13 -19.24 -0.33 -6.82 16 21 O -0.51 -3.43 12.68 -40.52 -0.51 -3.95 16 22 C -0.10 -1.25 9.53 -39.00 -0.37 -1.62 16 23 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 0.96 7.66 -51.93 -0.40 0.57 16 29 H 0.06 0.96 7.65 -51.93 -0.40 0.56 16 30 H 0.15 1.79 6.28 -52.49 -0.33 1.46 16 31 H 0.15 1.22 7.61 -52.49 -0.40 0.82 16 32 H 0.42 0.88 9.11 45.56 0.42 1.30 16 33 H 0.15 1.84 7.65 -52.48 -0.40 1.44 16 LS Contribution 301.96 15.07 4.55 4.55 Total: -1.00 -31.30 301.96 -5.98 -37.28 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: -2.74 Total: -2.47 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -2.50 Total: -12.94 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.74 Total: -25.53 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -1.04 Total: -15.64 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.30 -5.98 -37.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223430000.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.766 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds