Wall clock time and date at job start Mon Mar 30 2020 07:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99777 * 2 1 4 4 H 1.48500 * 109.46921 * 240.00274 * 3 2 1 5 5 H 1.48506 * 109.46938 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47056 * 120.00159 * 3 2 1 7 7 C 1.37873 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47240 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46997 * 180.02562 * 10 9 7 12 12 O 1.42905 * 109.46728 * 180.02562 * 11 10 9 13 13 C 1.35905 * 116.99842 * 179.97438 * 12 11 10 14 14 C 1.38819 * 119.96806 * 359.97438 * 13 12 11 15 15 C 1.38461 * 120.22555 * 180.02562 * 14 13 12 16 16 F 1.35098 * 119.92152 * 179.97438 * 15 14 13 17 17 C 1.38238 * 120.16005 * 359.97438 * 15 14 13 18 18 C 1.39589 * 119.92977 * 0.02562 * 17 15 14 19 19 C 1.47748 * 120.10764 * 180.02562 * 18 17 15 20 20 O 1.21465 * 119.99934 * 179.97438 * 19 18 17 21 21 O 1.34709 * 120.00312 * 359.97438 * 19 18 17 22 22 C 1.38461 * 119.96797 * 179.72475 * 13 12 11 23 23 H 0.96992 * 120.00032 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47247 * 59.99954 * 9 7 2 25 25 H 1.08996 * 109.47258 * 300.00114 * 9 7 2 26 26 H 1.09000 * 109.46866 * 59.99931 * 10 9 7 27 27 H 1.09001 * 109.46611 * 300.00048 * 10 9 7 28 28 H 1.09000 * 109.47486 * 60.00167 * 11 10 9 29 29 H 1.09001 * 109.47362 * 299.99445 * 11 10 9 30 30 H 1.07993 * 119.88841 * 359.97438 * 14 13 12 31 31 H 1.08002 * 120.03147 * 179.97438 * 17 15 14 32 32 H 0.96696 * 117.00642 * 180.02562 * 21 19 18 33 33 H 1.08003 * 120.07861 * 0.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 -0.0001 12 8 2.4091 -6.0732 0.0005 13 6 1.8897 -7.3291 0.0006 14 6 0.5134 -7.5102 0.0006 15 6 -0.0216 -8.7873 0.0012 16 9 -1.3619 -8.9565 0.0018 17 6 0.8125 -9.8897 0.0013 18 6 2.1974 -9.7152 0.0012 19 6 3.0926 -10.8906 0.0007 20 8 4.2974 -10.7365 0.0002 21 8 2.5726 -12.1333 0.0008 22 6 2.7337 -8.4266 -0.0046 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8902 26 1 2.8721 -3.6043 0.8905 27 1 2.8721 -3.6042 -0.8895 28 1 0.8541 -5.0446 -0.8903 29 1 0.8535 -5.0451 0.8897 30 1 -0.1424 -6.6521 0.0010 31 1 0.3930 -10.8849 0.0022 32 1 3.1978 -12.8709 0.0008 33 1 3.8046 -8.2860 -0.0083 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223430000.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:11 Heat of formation + Delta-G solvation = -184.251182 kcal Electronic energy + Delta-G solvation = -18967.276874 eV Core-core repulsion = 15485.571402 eV Total energy + Delta-G solvation = -3481.705472 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.07001 -41.69753 -40.81948 -38.42921 -37.15941 -35.98493 -33.74916 -32.30430 -31.24197 -28.80450 -26.40052 -25.04986 -23.73036 -22.56586 -21.82669 -19.87275 -19.10123 -18.57461 -17.84104 -17.40149 -17.37590 -16.94852 -16.85327 -16.80975 -16.53447 -16.45520 -15.41768 -15.02401 -14.60160 -14.45576 -13.95523 -13.70295 -13.43212 -13.08611 -12.95605 -12.83453 -12.63486 -12.50903 -12.20512 -12.16942 -11.88750 -11.54796 -11.50018 -11.26581 -10.56154 -10.25277 -9.49243 -8.22190 -6.32824 -0.67268 0.00344 1.31180 1.41444 1.43806 1.51661 1.65286 2.22776 2.40886 2.42630 2.94224 3.11988 3.59106 3.71486 3.78139 3.92034 4.02548 4.06017 4.36008 4.42176 4.52141 4.76958 4.81603 4.86410 4.92055 4.99152 5.12102 5.39803 5.48705 5.49448 5.66339 5.81008 6.14269 6.24933 6.82748 6.89374 7.36574 8.89465 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.033923 B = 0.003114 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.197393 B = 8990.430718 C = 9789.879098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.098 4.098 11 C 0.065 3.935 12 O -0.317 6.317 13 C 0.145 3.855 14 C -0.215 4.215 15 C 0.126 3.874 16 F -0.132 7.132 17 C -0.123 4.123 18 C -0.067 4.067 19 C 0.543 3.457 20 O -0.536 6.536 21 O -0.496 6.496 22 C -0.105 4.105 23 H 0.265 0.735 24 H 0.001 0.999 25 H 0.001 0.999 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.153 0.847 31 H 0.176 0.824 32 H 0.439 0.561 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.553 -23.753 0.000 23.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.079 0.921 9 C -0.009 4.009 10 C -0.136 4.136 11 C -0.010 4.010 12 O -0.230 6.230 13 C 0.098 3.902 14 C -0.234 4.234 15 C 0.106 3.894 16 F -0.110 7.110 17 C -0.142 4.142 18 C -0.068 4.068 19 C 0.388 3.612 20 O -0.427 6.427 21 O -0.310 6.310 22 C -0.124 4.124 23 H 0.074 0.926 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.171 0.829 31 H 0.194 0.806 32 H 0.302 0.698 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.598 -23.230 -0.001 23.285 hybrid contribution 0.094 0.752 0.000 0.758 sum 1.692 -22.478 -0.001 22.541 Atomic orbital electron populations 1.70066 1.07675 1.27972 1.51405 1.25933 0.95777 1.03253 0.94629 0.85516 0.78300 0.78166 0.79188 1.19235 1.20811 1.19222 1.21619 0.93660 0.92212 1.50959 0.92116 1.18913 0.94166 0.92078 0.95742 1.21447 0.98873 0.91077 1.02153 1.23058 0.91693 0.84016 1.02199 1.86133 1.37102 1.12022 1.87783 1.18585 0.90888 0.85381 0.95329 1.21666 0.95285 0.98590 1.07874 1.17201 0.77502 0.93187 1.01466 1.91544 1.29585 1.96196 1.93716 1.21421 0.91434 0.99985 1.01377 1.18467 0.92371 0.90423 1.05573 1.20378 0.85657 0.83695 0.71486 1.90925 1.17313 1.87318 1.47154 1.84491 1.45865 1.15903 1.84769 1.20551 1.01258 0.88729 1.01878 0.92650 0.98064 0.98051 0.92030 0.92038 0.90992 0.91004 0.82888 0.80625 0.69815 0.83255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.40 13.29 21.45 0.28 -55.11 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.55 -30.45 9.11 25.60 0.23 -30.22 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.10 -3.88 5.52 30.60 0.17 -3.71 16 11 C 0.06 2.07 4.74 71.98 0.34 2.41 16 12 O -0.32 -9.71 10.13 -92.49 -0.94 -10.65 16 13 C 0.14 3.76 6.68 22.46 0.15 3.91 16 14 C -0.21 -5.06 9.01 22.46 0.20 -4.86 16 15 C 0.13 2.62 7.29 22.32 0.16 2.79 16 16 F -0.13 -2.84 17.26 44.97 0.78 -2.06 16 17 C -0.12 -2.15 9.59 22.60 0.22 -1.93 16 18 C -0.07 -1.32 5.87 -20.12 -0.12 -1.44 16 19 C 0.54 9.85 8.27 70.34 0.58 10.43 16 20 O -0.54 -13.12 17.13 19.95 0.34 -12.78 16 21 O -0.50 -5.05 12.68 -56.19 -0.71 -5.76 16 22 C -0.11 -2.48 9.53 22.64 0.22 -2.26 16 23 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 24 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 25 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 26 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.07 2.16 7.66 -2.39 -0.02 2.15 16 29 H 0.07 2.16 7.65 -2.39 -0.02 2.14 16 30 H 0.15 3.52 6.28 -2.91 -0.02 3.50 16 31 H 0.18 2.16 7.61 -2.91 -0.02 2.14 16 32 H 0.44 0.39 9.11 -74.06 -0.67 -0.29 16 33 H 0.15 3.58 7.65 -2.91 -0.02 3.56 16 Total: -1.00 -66.81 301.96 5.02 -61.79 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: 0.48 Total: 1.72 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 2.77 Total: -22.73 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.28 Total: -55.11 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -1.31 Total: -29.19 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.78 Total: -2.06 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -66.81 5.02 -61.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223430000.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.464 kcal (2) G-P(sol) polarization free energy of solvation -66.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds