Wall clock time and date at job start Mon Mar 30 2020 07:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47369 * 2 1 4 4 N 1.46495 * 109.47109 * 175.15599 * 3 2 1 5 5 C 1.36881 * 120.00092 * 260.64463 * 4 3 2 6 6 H 1.08001 * 120.00307 * 215.55333 * 5 4 3 7 7 C 1.39046 * 120.00054 * 35.55276 * 5 4 3 8 8 N 1.31372 * 119.99749 * 25.86794 * 7 5 4 9 9 Si 1.86799 * 120.00332 * 205.86828 * 7 5 4 10 10 H 1.48501 * 109.47035 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47014 * 119.99959 * 9 7 5 12 12 H 1.48500 * 109.47021 * 239.99698 * 9 7 5 13 13 C 1.34777 * 120.00339 * 80.64993 * 4 3 2 14 14 O 1.21599 * 120.00449 * 157.02126 * 13 4 3 15 15 C 1.47658 * 119.99858 * 337.30398 * 13 4 3 16 16 C 1.39633 * 120.57781 * 19.82274 * 15 13 4 17 17 N 1.31649 * 120.56131 * 179.97438 * 16 15 13 18 18 C 1.32001 * 121.93258 * 0.02562 * 17 16 15 19 19 C 1.38226 * 121.12208 * 0.02562 * 18 17 16 20 20 C 1.38584 * 119.29251 * 359.68017 * 19 18 17 21 21 Cl 1.73598 * 120.87434 * 180.29224 * 20 19 18 22 22 H 1.08998 * 109.46870 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47026 * 300.00209 * 1 2 3 24 24 H 1.08996 * 109.46978 * 60.00106 * 1 2 3 25 25 H 1.08997 * 109.47304 * 239.99320 * 2 1 3 26 26 H 1.09008 * 109.46795 * 119.99551 * 2 1 3 27 27 H 1.08998 * 109.46712 * 55.15338 * 3 2 1 28 28 H 1.08996 * 109.46535 * 295.15835 * 3 2 1 29 29 H 0.97000 * 120.00467 * 180.02562 * 8 7 5 30 30 H 1.07997 * 119.71506 * 359.97438 * 16 15 13 31 31 H 1.07993 * 119.43943 * 180.02562 * 18 17 16 32 32 H 1.07997 * 120.35373 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5004 1.4441 0.1166 5 6 4.0897 1.6704 1.3312 6 1 5.0166 2.2219 1.3873 7 6 3.4951 1.1902 2.4927 8 7 2.7072 0.1402 2.4416 9 14 3.8164 2.0381 4.1259 10 1 4.7326 3.1877 3.9150 11 1 2.5328 2.5249 4.6919 12 1 4.4399 1.0754 5.0692 13 6 4.2637 1.2228 -0.9719 14 8 5.4127 1.6197 -0.9998 15 6 3.7026 0.5040 -2.1333 16 6 2.3208 0.4088 -2.3099 17 7 1.8209 -0.2318 -3.3457 18 6 2.5921 -0.8052 -4.2507 19 6 3.9698 -0.7578 -4.1488 20 6 4.5481 -0.0906 -3.0806 21 17 6.2739 0.0009 -2.9163 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.6076 1.9807 0.8434 28 1 1.7493 1.9306 -0.9302 29 1 2.2921 -0.1946 3.2518 30 1 1.6565 0.8645 -1.5906 31 1 2.1390 -1.3200 -5.0849 32 1 4.5890 -1.2315 -4.8961 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231407433.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:01 Heat of formation + Delta-G solvation = 60.521166 kcal Electronic energy + Delta-G solvation = -18889.911514 eV Core-core repulsion = 15879.449294 eV Total energy + Delta-G solvation = -3010.462220 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.48366 -38.13096 -36.36402 -35.62954 -33.17968 -31.74461 -31.41894 -30.60430 -26.14847 -25.31005 -23.30983 -23.11108 -20.88294 -19.75288 -17.35466 -17.18710 -16.74139 -15.83204 -14.91323 -14.62901 -14.29261 -14.03442 -13.68905 -13.53404 -13.16025 -12.54487 -12.47845 -12.03525 -11.95500 -11.70903 -11.23425 -11.05799 -10.77448 -10.72974 -10.55851 -10.43246 -10.21393 -9.86949 -9.32737 -9.07087 -8.98585 -8.50295 -8.35890 -7.63155 -6.40822 -4.02436 1.09670 1.38911 2.46909 3.08075 3.19900 3.26913 3.63113 3.98667 4.31551 4.55616 4.78062 4.81104 5.00577 5.25249 5.35741 5.60696 5.67764 5.81994 5.89811 5.92650 6.09135 6.13164 6.28778 6.49190 6.49764 6.71259 6.82248 6.98564 7.30919 7.85928 8.07776 8.18792 8.44162 9.04218 9.20901 9.79718 10.49985 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.021194 B = 0.008173 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.833399 B = 3425.258118 C = 4487.075213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.197 4.197 3 C 0.116 3.884 4 N -0.439 5.439 5 C -0.310 4.310 6 H 0.099 0.901 7 C 0.041 3.959 8 N -0.849 5.849 9 Si 0.919 3.081 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.503 3.497 14 O -0.551 6.551 15 C -0.165 4.165 16 C 0.092 3.908 17 N -0.495 5.495 18 C 0.106 3.894 19 C -0.189 4.189 20 C 0.042 3.958 21 Cl -0.032 7.032 22 H 0.047 0.953 23 H 0.051 0.949 24 H 0.041 0.959 25 H 0.060 0.940 26 H 0.151 0.849 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.270 0.730 30 H 0.221 0.779 31 H 0.158 0.842 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.698 -2.012 -7.599 8.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.235 4.235 3 C -0.008 4.008 4 N -0.158 5.158 5 C -0.437 4.437 6 H 0.117 0.883 7 C -0.164 4.164 8 N -0.485 5.485 9 Si 0.745 3.255 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.207 1.207 13 C 0.291 3.709 14 O -0.432 6.432 15 C -0.172 4.172 16 C -0.064 4.064 17 N -0.204 5.204 18 C -0.051 4.051 19 C -0.210 4.210 20 C 0.006 3.994 21 Cl -0.003 7.003 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.168 0.832 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.236 0.764 31 H 0.175 0.825 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.943 -1.927 -7.507 8.696 hybrid contribution 1.003 0.071 0.763 1.262 sum -2.940 -1.856 -6.744 7.587 Atomic orbital electron populations 1.21642 0.96832 1.00859 1.00489 1.23365 0.94748 0.98439 1.06959 1.21698 0.82351 0.97179 0.99529 1.43393 1.03883 1.61348 1.07164 1.19547 1.09676 1.33327 0.81142 0.88333 1.25416 0.96839 0.94289 0.99886 1.69543 1.31115 1.18632 1.29220 0.85987 0.78445 0.79840 0.81190 1.19027 1.20428 1.20711 1.17880 0.85889 0.83614 0.83498 1.90667 1.18657 1.52153 1.81759 1.21477 0.94687 1.03259 0.97756 1.25658 0.93572 0.93344 0.93779 1.67813 1.40163 1.09541 1.02930 1.22795 0.89569 0.95606 0.97129 1.21905 0.96811 1.03216 0.99055 1.21331 0.86700 0.96780 0.94548 1.98393 1.08053 1.96576 1.97253 0.93410 0.93033 0.94006 0.92271 0.83196 0.89923 0.92750 0.91910 0.76440 0.82527 0.84244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.80 37.16 0.36 -1.90 16 2 C -0.20 -3.88 4.77 -26.73 -0.13 -4.01 16 3 C 0.12 2.38 4.16 -4.04 -0.02 2.37 16 4 N -0.44 -10.76 2.56 -124.65 -0.32 -11.08 16 5 C -0.31 -8.13 9.00 -15.00 -0.13 -8.27 16 6 H 0.10 2.75 7.66 -52.49 -0.40 2.34 16 7 C 0.04 1.01 4.71 -17.45 -0.08 0.93 16 8 N -0.85 -20.65 9.55 55.50 0.53 -20.12 16 9 Si 0.92 19.35 29.63 -169.99 -5.04 14.31 16 10 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 11 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 C 0.50 12.44 7.23 -12.41 -0.09 12.35 16 14 O -0.55 -14.94 14.44 5.28 0.08 -14.87 16 15 C -0.17 -3.50 5.66 -104.79 -0.59 -4.09 16 16 C 0.09 1.74 6.82 -17.11 -0.12 1.62 16 17 N -0.49 -8.48 10.34 -16.89 -0.17 -8.65 16 18 C 0.11 1.55 11.17 -17.48 -0.20 1.35 16 19 C -0.19 -2.87 9.92 -39.46 -0.39 -3.26 16 20 C 0.04 0.81 6.39 -38.71 -0.25 0.56 16 21 Cl -0.03 -0.62 26.47 -51.86 -1.37 -1.99 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.04 0.61 7.79 -51.93 -0.40 0.20 16 25 H 0.06 1.20 4.20 -60.78 -0.26 0.95 16 26 H 0.15 3.44 4.79 -51.92 -0.25 3.19 16 27 H 0.08 1.73 7.52 -51.93 -0.39 1.34 16 28 H 0.06 1.01 5.70 -51.93 -0.30 0.71 16 29 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 30 H 0.22 4.00 1.62 -64.28 -0.10 3.89 16 31 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 273.93 15.07 4.13 4.13 Total: -1.00 -28.44 273.93 -6.73 -35.17 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -2.93 Total: 5.47 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -1.63 Total: -2.36 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.04 Total: -39.85 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.08 Total: -14.87 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.04 Total: 14.31 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.37 Total: -1.99 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.44 -6.73 -35.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231407433.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.686 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds