Wall clock time and date at job start Mon Mar 30 2020 07:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 O 1.42903 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.35644 * 116.99549 * 180.02562 * 12 11 10 14 14 C 1.38576 * 120.14495 * 359.72307 * 13 12 11 15 15 C 1.38341 * 120.06760 * 179.76714 * 14 13 12 16 16 F 1.35098 * 119.82648 * 180.28067 * 15 14 13 17 17 C 1.38871 * 120.34938 * 0.51241 * 15 14 13 18 18 C 1.37646 * 120.27695 * 359.74317 * 17 15 14 19 19 C 1.39841 * 119.93169 * 0.02562 * 18 17 15 20 20 C 1.47271 * 120.17199 * 179.97438 * 19 18 17 21 21 O 1.21531 * 119.99803 * 180.02562 * 20 19 18 22 22 O 1.34765 * 119.99866 * 0.02562 * 20 19 18 23 23 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 25 25 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 26 26 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 27 27 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 29 29 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 30 30 H 1.08007 * 119.96094 * 0.02562 * 14 13 12 31 31 H 1.07995 * 119.86169 * 179.72069 * 17 15 14 32 32 H 1.08001 * 120.03122 * 179.97438 * 18 17 15 33 33 H 0.96703 * 116.99615 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 8 2.4087 -6.0733 -0.0018 13 6 1.8902 -7.3267 -0.0019 14 6 0.5168 -7.5116 0.0044 15 6 -0.0104 -8.7906 -0.0005 16 9 -1.3500 -8.9653 -0.0001 17 6 0.8302 -9.8960 -0.0011 18 6 2.1965 -9.7289 -0.0020 19 6 2.7420 -8.4413 -0.0019 20 6 4.2030 -8.2563 -0.0024 21 8 4.6737 -7.1359 -0.0018 22 8 5.0181 -9.3296 -0.0034 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8725 -3.6048 0.8878 27 1 2.8712 -3.6040 -0.8921 28 1 0.8543 -5.0449 0.8894 29 1 0.8525 -5.0447 -0.8905 30 1 -0.1426 -6.6562 0.0090 31 1 0.4102 -10.8910 -0.0004 32 1 2.8466 -10.5914 -0.0021 33 1 5.9698 -9.1581 -0.0041 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236458569.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:44 Heat of formation + Delta-G solvation = -163.317827 kcal Electronic energy + Delta-G solvation = -19426.410572 eV Core-core repulsion = 15945.612838 eV Total energy + Delta-G solvation = -3480.797734 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -49.24876 -40.74954 -39.39001 -37.46772 -36.01241 -34.07166 -31.86958 -31.33661 -30.21101 -27.08245 -24.61107 -23.99173 -22.27437 -21.60304 -20.22198 -18.65853 -18.20158 -17.22567 -16.89366 -16.30933 -16.16687 -15.89407 -15.68067 -15.43955 -14.80608 -14.46353 -14.31294 -13.87873 -13.43941 -12.99276 -12.72065 -12.16425 -12.15512 -11.73352 -11.71508 -11.52589 -11.06941 -10.71900 -10.68034 -10.62894 -10.45542 -9.79931 -9.55264 -9.27791 -9.19472 -8.52865 -8.39222 -6.04754 -4.07321 0.36385 1.02147 2.39135 2.90804 3.12426 3.32956 3.36822 3.40393 3.40671 3.86080 4.39495 4.44058 4.65293 4.76700 4.87378 5.27901 5.31429 5.39666 5.41599 5.57308 5.69730 5.78780 5.89708 5.93786 6.32119 6.42793 6.52069 6.63908 6.95829 7.33776 7.57883 7.68419 7.90093 7.93609 8.35310 8.98557 9.57137 11.06740 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.022562 B = 0.003944 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.745034 B = 7097.016777 C = 8312.012349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.107 4.107 11 C 0.048 3.952 12 O -0.274 6.274 13 C 0.233 3.767 14 C -0.264 4.264 15 C 0.180 3.820 16 F -0.129 7.129 17 C -0.217 4.217 18 C 0.006 3.994 19 C -0.187 4.187 20 C 0.524 3.476 21 O -0.486 6.486 22 O -0.521 6.521 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.155 0.845 31 H 0.144 0.856 32 H 0.152 0.848 33 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.096 -22.341 -0.004 22.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.144 4.144 11 C -0.026 4.026 12 O -0.184 6.184 13 C 0.182 3.818 14 C -0.284 4.284 15 C 0.160 3.840 16 F -0.108 7.108 17 C -0.236 4.236 18 C -0.012 4.012 19 C -0.189 4.189 20 C 0.367 3.633 21 O -0.373 6.373 22 O -0.334 6.334 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.172 0.828 31 H 0.161 0.839 32 H 0.170 0.830 33 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 2.800 -21.867 -0.004 22.045 hybrid contribution 0.430 1.069 -0.001 1.152 sum 3.229 -20.798 -0.005 21.047 Atomic orbital electron populations 1.69951 1.06083 1.26879 1.50606 1.25014 0.94879 0.99346 0.95135 0.86600 0.79542 0.82817 0.78736 1.20148 1.21252 1.20155 1.21144 0.93176 0.90673 1.51004 0.92439 1.19052 0.93781 0.90825 0.97525 1.21725 0.99854 0.90414 1.02434 1.23484 0.92345 0.85418 1.01331 1.86420 1.36574 1.11057 1.84383 1.18790 0.90010 0.85720 0.87245 1.21264 0.94911 0.97971 1.14255 1.17691 0.77173 0.93561 0.95561 1.91543 1.30070 1.96218 1.92937 1.20951 0.93312 0.98544 1.10801 1.21098 0.94312 0.95652 0.90180 1.18391 0.89408 0.92399 1.18697 1.20399 0.87346 0.82100 0.73459 1.91019 1.76856 1.25049 1.44374 1.84515 1.23402 1.38765 1.86673 0.92852 0.96292 0.96285 0.91929 0.91920 0.91713 0.91708 0.82763 0.83862 0.82993 0.72862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 9 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.11 -2.25 5.52 -26.73 -0.15 -2.40 16 11 C 0.05 0.84 4.74 37.16 0.18 1.01 16 12 O -0.27 -4.79 8.20 -40.54 -0.33 -5.13 16 13 C 0.23 3.38 6.70 -38.69 -0.26 3.12 16 14 C -0.26 -3.38 9.00 -39.42 -0.35 -3.73 16 15 C 0.18 2.02 7.30 -39.31 -0.29 1.73 16 16 F -0.13 -1.49 17.26 2.25 0.04 -1.45 16 17 C -0.22 -1.97 10.00 -39.56 -0.40 -2.36 16 18 C 0.01 0.05 9.61 -39.20 -0.38 -0.32 16 19 C -0.19 -2.37 5.89 -104.86 -0.62 -2.99 16 20 C 0.52 6.93 8.26 34.40 0.28 7.22 16 21 O -0.49 -8.44 15.94 -26.62 -0.42 -8.86 16 22 O -0.52 -4.63 12.67 -40.67 -0.52 -5.15 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.06 1.04 7.65 -51.93 -0.40 0.65 16 29 H 0.06 1.05 7.67 -51.93 -0.40 0.65 16 30 H 0.15 1.91 6.29 -52.48 -0.33 1.58 16 31 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 32 H 0.15 1.00 7.61 -52.49 -0.40 0.60 16 33 H 0.41 1.96 9.11 45.56 0.42 2.37 16 LS Contribution 299.80 15.07 4.52 4.52 Total: -1.00 -33.12 299.80 -6.29 -39.41 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -2.76 Total: -2.26 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -2.53 Total: -11.79 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.74 Total: -25.98 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -1.27 Total: -19.14 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.12 -6.29 -39.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236458569.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.910 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds