Wall clock time and date at job start Mon Mar 30 2020 07:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 O 1.42903 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.35644 * 116.99549 * 180.02562 * 12 11 10 14 14 C 1.38576 * 120.14495 * 359.72307 * 13 12 11 15 15 C 1.38341 * 120.06760 * 179.76714 * 14 13 12 16 16 F 1.35098 * 119.82648 * 180.28067 * 15 14 13 17 17 C 1.38871 * 120.34938 * 0.51241 * 15 14 13 18 18 C 1.37646 * 120.27695 * 359.74317 * 17 15 14 19 19 C 1.39841 * 119.93169 * 0.02562 * 18 17 15 20 20 C 1.47271 * 120.17199 * 179.97438 * 19 18 17 21 21 O 1.21531 * 119.99803 * 180.02562 * 20 19 18 22 22 O 1.34765 * 119.99866 * 0.02562 * 20 19 18 23 23 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 25 25 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 26 26 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 27 27 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 29 29 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 30 30 H 1.08007 * 119.96094 * 0.02562 * 14 13 12 31 31 H 1.07995 * 119.86169 * 179.72069 * 17 15 14 32 32 H 1.08001 * 120.03122 * 179.97438 * 18 17 15 33 33 H 0.96703 * 116.99615 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 8 2.4087 -6.0733 -0.0018 13 6 1.8902 -7.3267 -0.0019 14 6 0.5168 -7.5116 0.0044 15 6 -0.0104 -8.7906 -0.0005 16 9 -1.3500 -8.9653 -0.0001 17 6 0.8302 -9.8960 -0.0011 18 6 2.1965 -9.7289 -0.0020 19 6 2.7420 -8.4413 -0.0019 20 6 4.2030 -8.2563 -0.0024 21 8 4.6737 -7.1359 -0.0018 22 8 5.0181 -9.3296 -0.0034 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8725 -3.6048 0.8878 27 1 2.8712 -3.6040 -0.8921 28 1 0.8543 -5.0449 0.8894 29 1 0.8525 -5.0447 -0.8905 30 1 -0.1426 -6.6562 0.0090 31 1 0.4102 -10.8910 -0.0004 32 1 2.8466 -10.5914 -0.0021 33 1 5.9698 -9.1581 -0.0041 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236458569.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:37 Heat of formation + Delta-G solvation = -184.049111 kcal Electronic energy + Delta-G solvation = -19427.309548 eV Core-core repulsion = 15945.612838 eV Total energy + Delta-G solvation = -3481.696710 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.13674 -41.76598 -40.44072 -38.50612 -36.95631 -36.00615 -33.76388 -32.27413 -31.26442 -28.87610 -25.63164 -25.54460 -23.56237 -22.65266 -21.83063 -19.70650 -19.13144 -18.60291 -18.13016 -17.63607 -17.49488 -16.90024 -16.69793 -16.49064 -16.47536 -15.72926 -15.41268 -15.02146 -14.69059 -14.41708 -13.89299 -13.81196 -13.41052 -13.40655 -12.82562 -12.64219 -12.48392 -12.46866 -12.26263 -12.21784 -11.60645 -11.54567 -11.54399 -11.29312 -10.58180 -10.18340 -9.51435 -8.23877 -6.34817 -0.55399 0.13172 1.39570 1.42516 1.43842 1.50586 1.95191 2.06488 2.40553 2.49591 2.96984 3.09888 3.52966 3.75223 3.90040 3.95984 4.01368 4.04392 4.37326 4.40762 4.75883 4.76642 4.83157 4.85026 4.99556 5.02795 5.08439 5.44212 5.54391 5.62128 5.64740 5.77894 6.11761 6.22903 6.79494 7.05244 7.34355 8.87877 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.022562 B = 0.003944 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.745034 B = 7097.016777 C = 8312.012349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.030 3.970 10 C -0.095 4.095 11 C 0.061 3.939 12 O -0.299 6.299 13 C 0.202 3.798 14 C -0.274 4.274 15 C 0.175 3.825 16 F -0.131 7.131 17 C -0.196 4.196 18 C 0.024 3.976 19 C -0.200 4.200 20 C 0.529 3.471 21 O -0.538 6.538 22 O -0.501 6.501 23 H 0.266 0.734 24 H 0.002 0.998 25 H 0.002 0.998 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.149 0.851 31 H 0.181 0.819 32 H 0.189 0.811 33 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.648 -24.515 -0.005 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.133 4.133 11 C -0.013 4.013 12 O -0.210 6.210 13 C 0.154 3.846 14 C -0.293 4.293 15 C 0.155 3.845 16 F -0.109 7.109 17 C -0.214 4.214 18 C 0.006 3.994 19 C -0.202 4.202 20 C 0.374 3.626 21 O -0.430 6.430 22 O -0.315 6.315 23 H 0.074 0.926 24 H 0.020 0.980 25 H 0.021 0.979 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.167 0.833 31 H 0.199 0.801 32 H 0.206 0.794 33 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 3.370 -24.096 -0.005 24.330 hybrid contribution 0.250 1.539 -0.001 1.559 sum 3.620 -22.557 -0.006 22.846 Atomic orbital electron populations 1.70069 1.07650 1.28025 1.51234 1.25931 0.95810 1.03223 0.94459 0.85494 0.78316 0.78056 0.79166 1.19269 1.20475 1.19279 1.21587 0.93540 0.92253 1.51282 0.92431 1.18903 0.94032 0.91951 0.95781 1.21409 0.98800 0.91358 1.01693 1.23107 0.91680 0.84333 1.02205 1.86338 1.36708 1.12165 1.85795 1.19057 0.91082 0.84901 0.89596 1.21252 0.94280 0.98930 1.14858 1.17853 0.77372 0.93626 0.95606 1.91543 1.30285 1.96160 1.92943 1.21372 0.92830 0.99383 1.07826 1.21484 0.94867 0.95050 0.87993 1.18663 0.89214 0.93224 1.19096 1.20547 0.87947 0.81960 0.72104 1.91004 1.77767 1.27153 1.47031 1.84458 1.24822 1.36608 1.85613 0.92569 0.97953 0.97944 0.92618 0.92608 0.90884 0.90882 0.83302 0.80122 0.79382 0.70569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.41 13.29 21.45 0.28 -56.13 16 2 C 0.00 0.23 5.46 84.65 0.46 0.70 16 3 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.55 -31.89 9.11 25.60 0.23 -31.66 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.62 4.97 29.85 0.15 1.77 16 10 C -0.09 -4.19 5.52 30.59 0.17 -4.02 16 11 C 0.06 2.21 4.74 71.98 0.34 2.55 16 12 O -0.30 -10.79 8.20 -68.63 -0.56 -11.36 16 13 C 0.20 5.88 6.70 22.85 0.15 6.03 16 14 C -0.27 -6.90 9.00 22.38 0.20 -6.70 16 15 C 0.18 3.56 7.30 22.45 0.16 3.73 16 16 F -0.13 -2.76 17.26 44.97 0.78 -1.98 16 17 C -0.20 -2.76 10.00 22.28 0.22 -2.54 16 18 C 0.02 0.35 9.61 22.52 0.22 0.57 16 19 C -0.20 -4.77 5.89 -20.02 -0.12 -4.89 16 20 C 0.53 13.45 8.26 70.20 0.58 14.03 16 21 O -0.54 -19.00 15.94 26.74 0.43 -18.57 16 22 O -0.50 -7.56 12.67 -56.76 -0.72 -8.28 16 23 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 24 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 25 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 26 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.07 2.46 7.65 -2.39 -0.02 2.44 16 29 H 0.07 2.46 7.67 -2.39 -0.02 2.44 16 30 H 0.15 3.79 6.29 -2.91 -0.02 3.77 16 31 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 32 H 0.19 1.44 7.61 -2.91 -0.02 1.42 16 33 H 0.43 3.03 9.11 -74.06 -0.67 2.35 16 Total: -1.00 -73.47 299.80 5.48 -67.99 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: 0.47 Total: 2.01 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 2.77 Total: -20.44 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.28 Total: -56.13 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -0.86 Total: -38.21 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.78 Total: -1.98 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -73.47 5.48 -67.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236458569.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.062 kcal (2) G-P(sol) polarization free energy of solvation -73.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds