Wall clock time and date at job start Mon Mar 30 2020 06:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35935 * 116.99625 * 2 1 4 4 C 1.38705 * 120.05894 * 359.97438 * 3 2 1 5 5 C 1.38151 * 119.95414 * 179.97438 * 4 3 2 6 6 C 1.38279 * 120.07613 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.93769 * 180.02562 * 6 5 4 8 8 C 1.50700 * 112.99750 * 235.49917 * 7 6 5 9 9 H 1.08007 * 119.99773 * 354.22698 * 8 7 6 10 10 C 1.37871 * 120.00104 * 174.23501 * 8 7 6 11 11 N 1.31517 * 120.00115 * 352.00949 * 10 8 7 12 12 Si 1.86802 * 120.00114 * 172.01141 * 10 8 7 13 13 H 1.48501 * 109.47201 * 275.00557 * 12 10 8 14 14 H 1.48500 * 109.47196 * 35.00513 * 12 10 8 15 15 H 1.48501 * 109.47518 * 155.00799 * 12 10 8 16 16 C 1.54033 * 113.92635 * 7.42607 * 7 6 5 17 17 O 1.44168 * 85.51847 * 91.66516 * 16 7 6 18 18 C 1.44180 * 93.34238 * 24.19192 * 17 16 7 19 19 C 1.38245 * 120.11913 * 0.27538 * 6 5 4 20 20 C 1.38254 * 120.04172 * 359.45060 * 19 6 5 21 21 Cl 1.73599 * 120.03766 * 180.27381 * 20 19 6 22 22 H 1.09002 * 109.46953 * 60.00897 * 1 2 3 23 23 H 1.09003 * 109.46945 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47285 * 300.00384 * 1 2 3 25 25 H 1.07994 * 120.02240 * 0.02562 * 4 3 2 26 26 H 1.07997 * 119.95877 * 179.97438 * 5 4 3 27 27 H 0.97003 * 119.99667 * 180.02562 * 11 10 8 28 28 H 1.09008 * 113.86307 * 205.81014 * 16 7 6 29 29 H 1.09002 * 113.86780 * 337.50834 * 16 7 6 30 30 H 1.09002 * 113.86252 * 221.66701 * 18 17 16 31 31 H 1.08997 * 113.98270 * 89.96918 * 18 17 16 32 32 H 1.08002 * 119.97166 * 179.73021 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2112 0.0000 4 6 1.2917 2.3752 -0.0005 5 6 1.9211 3.6051 0.0000 6 6 3.3020 3.6768 0.0016 7 6 3.9853 5.0200 0.0028 8 6 4.9539 5.1889 -1.1393 9 1 5.1655 4.3573 -1.7953 10 6 5.5701 6.4047 -1.3467 11 7 5.1988 7.4572 -0.6510 12 14 6.9322 6.5571 -2.6158 13 1 8.2268 6.1665 -2.0019 14 1 6.6400 5.6636 -3.7654 15 1 7.0130 7.9623 -3.0891 16 6 3.0239 6.2098 0.1840 17 8 3.2904 6.0646 1.5934 18 6 4.5626 5.4231 1.3727 19 6 4.0569 2.5187 -0.0031 20 6 3.4322 1.2853 0.0021 21 17 4.3802 -0.1690 0.0034 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 0.2132 2.3202 -0.0005 26 1 1.3338 4.5114 -0.0008 27 1 5.6321 8.3127 -0.7972 28 1 3.3929 7.1435 -0.2407 29 1 1.9933 5.9905 -0.0950 30 1 4.7523 4.5797 2.0367 31 1 5.4028 6.1148 1.3110 32 1 5.1353 2.5775 -0.0062 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258573286.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:56 Heat of formation + Delta-G solvation = -36.248536 kcal Electronic energy + Delta-G solvation = -18352.236312 eV Core-core repulsion = 15305.285091 eV Total energy + Delta-G solvation = -3046.951221 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.63042 -40.54224 -38.20383 -37.26200 -34.87800 -32.28488 -31.88360 -29.32232 -27.96356 -26.94542 -26.31938 -23.69440 -23.18385 -20.53865 -19.24751 -18.60217 -17.36396 -17.13694 -16.67590 -16.54907 -16.21447 -15.96371 -15.50454 -14.99866 -14.81322 -14.43968 -14.14496 -13.54698 -13.15355 -13.04649 -12.89481 -12.74473 -12.45610 -12.40110 -12.21600 -11.94403 -11.88833 -11.56975 -11.40577 -10.82160 -10.42078 -10.07049 -9.78071 -8.93657 -8.00558 -6.31417 0.22529 0.41753 1.21173 1.44128 1.47445 1.55348 2.32387 2.39921 2.70071 3.04542 3.40487 3.83012 3.92652 4.15191 4.32613 4.41665 4.45510 4.47617 4.60951 4.66743 4.77858 4.85938 4.93102 5.03449 5.22552 5.31222 5.52161 5.61834 5.71829 5.75654 5.77840 6.00984 6.33399 6.36815 6.77292 7.38325 8.83570 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.022414 B = 0.006392 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.933601 B = 4379.660299 C = 5055.155674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.323 6.323 3 C 0.117 3.883 4 C -0.186 4.186 5 C -0.087 4.087 6 C -0.068 4.068 7 C 0.039 3.961 8 C -0.516 4.516 9 H 0.055 0.945 10 C 0.027 3.973 11 N -0.898 5.898 12 Si 0.957 3.043 13 H -0.275 1.275 14 H -0.272 1.272 15 H -0.283 1.283 16 C 0.019 3.981 17 O -0.418 6.418 18 C 0.050 3.950 19 C -0.073 4.073 20 C -0.078 4.078 21 Cl -0.065 7.065 22 H 0.066 0.934 23 H 0.122 0.878 24 H 0.066 0.934 25 H 0.166 0.834 26 H 0.136 0.864 27 H 0.266 0.734 28 H 0.118 0.882 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.811 -10.982 0.347 13.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C 0.071 3.929 4 C -0.204 4.204 5 C -0.104 4.104 6 C -0.068 4.068 7 C 0.039 3.961 8 C -0.554 4.554 9 H 0.073 0.927 10 C -0.173 4.173 11 N -0.537 5.537 12 Si 0.782 3.218 13 H -0.201 1.201 14 H -0.197 1.197 15 H -0.208 1.208 16 C -0.057 4.057 17 O -0.338 6.338 18 C -0.027 4.027 19 C -0.092 4.092 20 C -0.105 4.105 21 Cl -0.036 7.036 22 H 0.085 0.915 23 H 0.140 0.860 24 H 0.085 0.915 25 H 0.184 0.816 26 H 0.154 0.846 27 H 0.076 0.924 28 H 0.135 0.865 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.750 -11.050 0.592 13.510 hybrid contribution 0.922 0.429 -0.661 1.213 sum -6.828 -10.620 -0.069 12.626 Atomic orbital electron populations 1.23404 0.76180 1.05760 1.02466 1.86107 1.23618 1.25345 1.88634 1.18634 0.90106 0.85797 0.98348 1.21370 1.01273 0.90348 1.07447 1.21230 0.93919 0.98274 0.97022 1.19649 0.93727 0.94251 0.99184 1.19888 0.93314 0.88949 0.93960 1.21248 1.24102 0.97029 1.12992 0.92691 1.25637 0.98697 0.95147 0.97775 1.69823 1.40866 1.00661 1.42320 0.85584 0.79722 0.77178 0.79268 1.20090 1.19712 1.20824 1.24886 0.97451 1.03666 0.79726 1.89297 1.35080 1.82520 1.26872 1.23941 0.87430 0.94772 0.96553 1.20698 1.00616 0.89323 0.98578 1.20199 0.89308 0.88110 1.12909 1.98312 1.71990 1.36053 1.97277 0.91547 0.85967 0.91530 0.81629 0.84599 0.92423 0.86542 0.91831 0.91959 0.91675 0.85162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.32 -8.68 9.96 -92.81 -0.92 -9.60 16 3 C 0.12 3.68 6.68 22.52 0.15 3.83 16 4 C -0.19 -5.45 9.04 22.36 0.20 -5.25 16 5 C -0.09 -3.09 9.27 22.26 0.21 -2.88 16 6 C -0.07 -2.80 4.91 -19.85 -0.10 -2.90 16 7 C 0.04 1.87 1.11 -52.97 -0.06 1.81 16 8 C -0.52 -26.35 8.38 25.60 0.21 -26.14 16 9 H 0.05 2.82 7.66 -2.91 -0.02 2.80 16 10 C 0.03 1.38 5.04 84.65 0.43 1.81 16 11 N -0.90 -47.11 8.97 21.45 0.19 -46.92 16 12 Si 0.96 40.93 29.54 68.60 2.03 42.96 16 13 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 14 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 15 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 16 C 0.02 0.91 7.60 72.27 0.55 1.46 16 17 O -0.42 -20.74 12.40 -148.98 -1.85 -22.59 16 18 C 0.05 2.44 7.99 72.27 0.58 3.01 16 19 C -0.07 -2.86 9.03 22.28 0.20 -2.66 16 20 C -0.08 -2.73 6.33 22.41 0.14 -2.59 16 21 Cl -0.07 -2.06 28.50 -2.72 -0.08 -2.13 16 22 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 23 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 25 H 0.17 3.51 6.30 -2.91 -0.02 3.49 16 26 H 0.14 4.64 5.64 -2.91 -0.02 4.62 16 27 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 28 H 0.12 6.18 5.09 -2.38 -0.01 6.17 16 29 H 0.06 2.70 5.67 -2.39 -0.01 2.69 16 30 H 0.06 2.77 8.09 -2.39 -0.02 2.75 16 31 H 0.07 3.41 6.77 -2.39 -0.02 3.39 16 32 H 0.13 5.18 8.02 -2.91 -0.02 5.16 16 Total: -1.00 -57.65 280.91 4.15 -53.50 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 1.15 Total: 13.91 kcal Atomic # 6 Polarization: -32.75 SS G_CDS: 3.63 Total: -29.12 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 0.19 Total: -46.92 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -2.77 Total: -32.19 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.08 Total: -2.13 kcal Total: -57.65 4.15 -53.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258573286.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.250 kcal (2) G-P(sol) polarization free energy of solvation -57.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds