Wall clock time and date at job start Mon Mar 30 2020 07:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 C 1.38239 * 119.99743 * 269.72597 * 5 4 2 7 7 C 1.38236 * 119.99796 * 179.76891 * 6 5 4 8 8 C 1.38242 * 119.99871 * 0.48508 * 7 6 5 9 9 S 1.76205 * 119.99773 * 179.76995 * 8 7 6 10 10 O 1.42096 * 106.40374 * 23.56033 * 9 8 7 11 11 O 1.42099 * 106.40064 * 156.48383 * 9 8 7 12 12 C 1.76195 * 107.21518 * 270.02161 * 9 8 7 13 13 H 1.08001 * 120.00572 * 0.02562 * 12 9 8 14 14 C 1.37877 * 119.99816 * 180.02562 * 12 9 8 15 15 N 1.31522 * 120.00127 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 120.00311 * 179.97438 * 14 12 9 17 17 H 1.48493 * 109.47222 * 89.99743 * 16 14 12 18 18 H 1.48504 * 109.47420 * 210.00331 * 16 14 12 19 19 H 1.48502 * 109.46889 * 330.00259 * 16 14 12 20 20 C 1.38230 * 119.99757 * 359.79237 * 8 7 6 21 21 C 1.38231 * 120.00640 * 359.95396 * 20 8 7 22 22 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 25 25 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 26 26 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 28 28 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 29 29 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 30 30 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 31 31 H 1.07997 * 120.00611 * 359.97438 * 6 5 4 32 32 H 1.08001 * 120.00122 * 180.25296 * 7 6 5 33 33 H 0.97000 * 119.99925 * 180.02562 * 15 14 12 34 34 H 1.08007 * 119.99539 * 179.97438 * 20 8 7 35 35 H 1.08000 * 120.00464 * 180.02562 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.8294 -1.1888 6 6 4.3291 0.1685 -1.7323 7 6 5.7068 0.0716 -1.6726 8 6 6.2973 -1.0281 -1.0783 9 16 8.0534 -1.1545 -1.0077 10 8 8.5553 0.1714 -1.1034 11 8 8.3499 -2.0213 0.0786 12 6 8.5752 -1.9907 -2.4682 13 1 7.8452 -2.3139 -3.1955 14 6 9.9156 -2.2324 -2.6825 15 7 10.8046 -1.8393 -1.7966 16 14 10.4689 -3.1196 -4.2305 17 1 10.7309 -2.1267 -5.3032 18 1 11.7115 -3.8817 -3.9470 19 1 9.4039 -4.0556 -4.6720 20 6 5.5100 -2.0287 -0.5400 21 6 4.1324 -1.9293 -0.5949 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6054 -1.7198 -1.2951 30 1 1.7517 -0.1583 -2.1369 31 1 3.8680 1.0254 -2.2006 32 1 6.3219 0.8531 -2.0936 33 1 11.7476 -2.0090 -1.9476 34 1 5.9713 -2.8880 -0.0760 35 1 3.5173 -2.7109 -0.1739 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259004963.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:11 Heat of formation + Delta-G solvation = -89.397655 kcal Electronic energy + Delta-G solvation = -18112.415611 eV Core-core repulsion = 15201.036473 eV Total energy + Delta-G solvation = -2911.379138 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.24232 -36.19897 -35.21319 -33.94276 -33.09789 -31.37028 -30.63207 -27.28602 -26.58390 -26.10362 -22.41814 -21.72976 -20.03159 -18.76600 -17.45920 -16.39614 -15.66667 -15.29890 -14.87511 -14.56311 -14.40873 -13.95805 -13.86838 -13.46919 -13.10317 -12.96274 -12.42003 -12.35814 -12.09749 -11.93081 -11.68719 -11.23004 -11.19719 -11.05123 -10.87742 -10.82580 -10.69051 -10.59737 -10.26374 -10.14894 -9.55419 -9.25546 -8.85580 -8.60148 -8.55160 -6.71965 -5.34487 1.31327 1.72573 2.17790 3.07390 3.13931 3.20913 3.87695 4.08209 4.62848 4.67000 4.72271 4.82973 5.08624 5.20917 5.29040 5.38271 5.42734 5.48870 5.53913 5.67953 5.74753 5.75574 5.78040 5.88721 5.91905 5.95364 6.16167 6.20025 6.22670 6.27365 6.57694 6.58078 6.77519 7.02549 7.28527 7.29733 7.94093 8.86019 10.22755 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.037445 B = 0.004723 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.582971 B = 5926.883372 C = 6118.799239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.153 4.153 4 C -0.079 4.079 5 C -0.049 4.049 6 C -0.144 4.144 7 C -0.026 4.026 8 C -0.646 4.646 9 S 2.605 3.395 10 O -0.986 6.986 11 O -0.986 6.986 12 C -1.002 5.002 13 H 0.104 0.896 14 C 0.132 3.868 15 N -0.843 5.843 16 Si 0.923 3.077 17 H -0.266 1.266 18 H -0.274 1.274 19 H -0.262 1.262 20 C -0.025 4.025 21 C -0.146 4.146 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.138 0.862 33 H 0.292 0.708 34 H 0.138 0.862 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.423 1.918 -0.056 16.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.210 4.210 4 C -0.116 4.116 5 C -0.049 4.049 6 C -0.163 4.163 7 C -0.045 4.045 8 C -0.727 4.727 9 S 2.786 3.214 10 O -0.983 6.983 11 O -0.983 6.983 12 C -1.135 5.135 13 H 0.122 0.878 14 C -0.086 4.086 15 N -0.472 5.472 16 Si 0.747 3.253 17 H -0.191 1.191 18 H -0.199 1.199 19 H -0.186 1.186 20 C -0.044 4.044 21 C -0.165 4.165 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.141 0.859 32 H 0.156 0.844 33 H 0.102 0.898 34 H 0.156 0.844 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.814 2.274 0.715 15.993 hybrid contribution -0.265 -0.698 -1.342 1.536 sum -16.080 1.576 -0.627 16.169 Atomic orbital electron populations 1.21847 0.95150 1.01627 1.01724 1.21086 0.95300 0.96694 0.97984 1.21946 1.02139 0.95540 1.01411 1.20741 0.91135 1.01249 0.98484 1.19995 0.95267 0.94046 0.95614 1.21087 0.93724 0.99163 1.02326 1.20998 0.94925 0.95571 0.92993 1.31615 1.29711 1.01713 1.09685 1.00984 0.69897 0.74220 0.76263 1.93333 1.76453 1.39942 1.88581 1.93334 1.81700 1.67408 1.55856 1.30142 1.00660 1.55518 1.27190 0.87750 1.24774 0.94844 0.91466 0.97512 1.69905 1.04002 1.39196 1.34087 0.86119 0.78601 0.79696 0.80923 1.19082 1.19865 1.18565 1.20988 0.93443 0.96700 0.93246 1.21076 0.94902 0.98415 1.02112 0.92704 0.92735 0.92690 0.90970 0.91767 0.92755 0.92911 0.90913 0.90897 0.85923 0.84383 0.89780 0.84378 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.19 37.16 0.34 -0.81 16 2 C -0.09 -0.90 2.91 -90.62 -0.26 -1.16 16 3 C -0.15 -1.54 8.78 37.16 0.33 -1.22 16 4 C -0.08 -0.84 4.84 -27.89 -0.13 -0.97 16 5 C -0.05 -0.70 4.70 -104.62 -0.49 -1.20 16 6 C -0.14 -2.23 7.98 -39.58 -0.32 -2.55 16 7 C -0.03 -0.50 9.52 -39.58 -0.38 -0.88 16 8 C -0.65 -13.91 5.81 -39.58 -0.23 -14.14 16 9 S 2.61 69.66 4.65 -107.50 -0.50 69.16 16 10 O -0.99 -28.56 17.16 -57.17 -0.98 -29.54 16 11 O -0.99 -28.58 17.16 -57.17 -0.98 -29.56 16 12 C -1.00 -27.56 9.58 30.60 0.29 -27.27 16 13 H 0.10 2.64 7.81 -52.49 -0.41 2.23 16 14 C 0.13 3.65 5.46 -17.82 -0.10 3.56 16 15 N -0.84 -24.54 13.19 55.43 0.73 -23.81 16 16 Si 0.92 20.40 29.54 -169.99 -5.02 15.38 16 17 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 20 C -0.03 -0.48 9.52 -39.59 -0.38 -0.86 16 21 C -0.15 -2.28 9.70 -39.58 -0.38 -2.66 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.76 6.28 -51.93 -0.33 0.43 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 30 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 31 H 0.12 1.53 8.05 -52.49 -0.42 1.11 16 32 H 0.14 2.55 7.62 -52.49 -0.40 2.15 16 33 H 0.29 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.14 2.57 7.62 -52.48 -0.40 2.17 16 35 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 309.81 15.07 4.67 4.67 Total: -1.00 -33.56 309.81 -8.69 -42.25 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -4.89 Total: 1.61 kcal Atomic # 6 Polarization: -48.44 SS G_CDS: -1.71 Total: -50.15 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.73 Total: -23.81 kcal Atomic # 8 Polarization: -57.14 SS G_CDS: -1.96 Total: -59.11 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 69.66 SS G_CDS: -0.50 Total: 69.16 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.56 -8.69 -42.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259004963.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.149 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds