Wall clock time and date at job start Mon Mar 30 2020 07:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35977 * 117.00016 * 2 1 4 4 C 1.38561 * 119.95683 * 359.97438 * 3 2 1 5 5 C 1.38937 * 119.91065 * 180.02562 * 4 3 2 6 6 S 1.76200 * 120.08480 * 180.02562 * 5 4 3 7 7 C 1.76197 * 100.00219 * 6.88811 * 6 5 4 8 8 H 1.08003 * 119.99608 * 5.66446 * 7 6 5 9 9 C 1.38682 * 120.00193 * 185.66709 * 7 6 5 10 10 N 1.31655 * 119.99867 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99806 * 359.97438 * 9 7 6 12 12 H 1.48508 * 109.47349 * 89.99926 * 11 9 7 13 13 H 1.48497 * 109.47180 * 210.00058 * 11 9 7 14 14 H 1.48503 * 109.47259 * 329.99826 * 11 9 7 15 15 C 1.39579 * 119.82899 * 0.02562 * 5 4 3 16 16 O 1.36010 * 120.04499 * 180.02562 * 15 5 4 17 17 C 1.42902 * 116.99794 * 269.99608 * 16 15 5 18 18 C 1.38452 * 119.91514 * 359.97438 * 15 5 4 19 19 C 1.50702 * 119.95415 * 180.26025 * 18 15 5 20 20 C 1.38298 * 120.08587 * 359.97438 * 18 15 5 21 21 C 1.50703 * 119.91258 * 179.97438 * 20 18 15 22 22 H 1.08995 * 109.47560 * 59.99804 * 1 2 3 23 23 H 1.09004 * 109.47327 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47062 * 299.99332 * 1 2 3 25 25 H 1.07995 * 120.04416 * 359.96820 * 4 3 2 26 26 H 0.97007 * 119.99477 * 179.97438 * 10 9 7 27 27 H 1.08999 * 109.46992 * 300.00231 * 17 16 15 28 28 H 1.09001 * 109.47032 * 59.99746 * 17 16 15 29 29 H 1.08993 * 109.46991 * 179.97438 * 17 16 15 30 30 H 1.09001 * 109.46650 * 269.72032 * 19 18 15 31 31 H 1.09003 * 109.47248 * 29.72275 * 19 18 15 32 32 H 1.08998 * 109.46791 * 149.72286 * 19 18 15 33 33 H 1.09002 * 109.47290 * 89.99803 * 21 20 18 34 34 H 1.08996 * 109.47621 * 209.99920 * 21 20 18 35 35 H 1.09002 * 109.46893 * 330.00471 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2907 2.3731 -0.0005 5 6 1.9225 3.6105 -0.0011 6 16 0.9662 5.0904 -0.0011 7 6 -0.6467 4.4126 0.2078 8 1 -0.7689 3.3539 0.3829 9 6 -1.7591 5.2385 0.1473 10 7 -2.9643 4.7318 0.3029 11 14 -1.5475 7.0696 -0.1550 12 1 -1.5780 7.3371 -1.6154 13 1 -2.6505 7.8113 0.5073 14 1 -0.2458 7.5163 0.4030 15 6 3.3166 3.6783 -0.0016 16 8 3.9397 4.8873 -0.0016 17 6 4.2364 5.4641 -1.2749 18 6 4.0646 2.5131 -0.0011 19 6 5.5699 2.5853 0.0043 20 6 3.4321 1.2833 0.0005 21 6 4.2500 0.0175 0.0005 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 0.2123 2.3166 -0.0015 26 1 -3.7424 5.3096 0.2609 27 1 4.8931 4.7962 -1.8322 28 1 3.3109 5.6115 -1.8316 29 1 4.7310 6.4248 -1.1321 30 1 5.9365 2.5995 -1.0221 31 1 5.8883 3.4932 0.5165 32 1 5.9734 1.7153 0.5223 33 1 4.4484 -0.2869 1.0282 34 1 3.6992 -0.7711 -0.5121 35 1 5.1942 0.1951 -0.5144 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259087554.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:24 Heat of formation + Delta-G solvation = -77.364101 kcal Electronic energy + Delta-G solvation = -18554.143380 eV Core-core repulsion = 15643.286055 eV Total energy + Delta-G solvation = -2910.857324 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.40494 -39.73620 -37.46198 -34.89851 -34.28677 -31.75135 -29.02744 -28.54924 -28.00457 -27.17700 -26.75328 -22.63054 -22.06715 -20.36064 -18.45988 -18.27397 -17.72087 -17.34152 -16.85067 -16.35881 -16.31612 -15.43122 -15.26353 -14.69367 -14.60018 -14.33080 -13.96571 -13.65631 -13.51658 -13.30659 -13.27178 -12.96958 -12.87369 -12.81972 -12.51457 -12.31439 -12.21552 -12.02514 -11.60659 -11.25805 -10.89357 -10.73951 -10.14415 -9.16561 -8.62881 -8.56545 -6.36682 0.22332 0.30889 0.96845 1.23687 1.37141 1.56738 2.11866 2.30640 2.42470 2.52404 2.76581 3.04181 3.86647 4.04092 4.23997 4.26766 4.30776 4.39659 4.50046 4.57025 4.59740 4.60914 4.66866 4.81326 4.85150 4.92333 4.94302 5.08155 5.21590 5.26257 5.44071 5.56835 5.61876 5.71582 6.07867 6.30514 6.66903 6.78013 8.48164 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.018727 B = 0.007876 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.829806 B = 3554.456743 C = 4952.665412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.129 3.871 4 C -0.234 4.234 5 C -0.077 4.077 6 S -0.031 6.031 7 C -0.558 4.558 8 H 0.077 0.923 9 C 0.051 3.949 10 N -0.905 5.905 11 Si 0.912 3.088 12 H -0.255 1.255 13 H -0.255 1.255 14 H -0.232 1.232 15 C 0.044 3.956 16 O -0.336 6.336 17 C 0.027 3.973 18 C -0.052 4.052 19 C -0.103 4.103 20 C -0.137 4.137 21 C -0.091 4.091 22 H 0.044 0.956 23 H 0.136 0.864 24 H 0.040 0.960 25 H 0.128 0.872 26 H 0.281 0.719 27 H 0.061 0.939 28 H 0.030 0.970 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.926 -5.297 -3.044 16.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.082 3.918 4 C -0.259 4.259 5 C -0.193 4.193 6 S 0.221 5.779 7 C -0.705 4.705 8 H 0.095 0.905 9 C -0.156 4.156 10 N -0.541 5.541 11 Si 0.733 3.267 12 H -0.179 1.179 13 H -0.179 1.179 14 H -0.156 1.156 15 C -0.007 4.007 16 O -0.253 6.253 17 C -0.067 4.067 18 C -0.055 4.055 19 C -0.159 4.159 20 C -0.141 4.141 21 C -0.147 4.147 22 H 0.063 0.937 23 H 0.154 0.846 24 H 0.059 0.941 25 H 0.146 0.854 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.133 0.867 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.002 -4.022 -2.985 15.816 hybrid contribution -1.954 -0.455 -0.104 2.009 sum 13.049 -4.477 -3.089 14.137 Atomic orbital electron populations 1.23163 0.77495 1.05267 1.00830 1.85967 1.22118 1.26096 1.88743 1.18914 0.92432 0.83576 0.96885 1.21424 1.00846 0.91685 1.11973 1.22443 0.96505 0.98015 1.02290 1.82634 1.00808 1.07776 1.86731 1.22910 0.91355 0.98726 1.57471 0.90523 1.25648 0.93737 1.03721 0.92504 1.70011 0.98700 1.38406 1.47023 0.85939 0.81109 0.79170 0.80525 1.17949 1.17905 1.15613 1.18027 0.87485 0.86182 1.09030 1.86002 1.77004 1.31893 1.30393 1.23151 0.99826 0.99400 0.84346 1.19992 0.98042 0.89728 0.97699 1.20777 0.87349 1.04124 1.03645 1.19251 0.89711 0.96741 1.08436 1.20588 0.99000 0.92241 1.02888 0.93736 0.84637 0.94114 0.85439 0.90967 0.92008 0.95145 0.86687 0.89373 0.90909 0.88968 0.90681 0.91615 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 9.81 113.37 1.11 1.97 16 2 O -0.32 -10.92 9.52 -93.29 -0.89 -11.81 16 3 C 0.13 4.98 6.65 22.47 0.15 5.13 16 4 C -0.23 -10.67 8.21 22.51 0.18 -10.49 16 5 C -0.08 -3.60 6.11 22.76 0.14 -3.46 16 6 S -0.03 -1.56 19.11 -56.49 -1.08 -2.63 16 7 C -0.56 -32.43 9.53 67.93 0.65 -31.78 16 8 H 0.08 4.77 5.21 -2.91 -0.02 4.75 16 9 C 0.05 2.90 5.50 84.83 0.47 3.36 16 10 N -0.91 -53.67 13.97 21.63 0.30 -53.37 16 11 Si 0.91 42.43 27.73 68.60 1.90 44.33 16 12 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 13 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 14 H -0.23 -10.53 6.74 99.48 0.67 -9.86 16 15 C 0.04 1.72 5.70 22.64 0.13 1.85 16 16 O -0.34 -12.15 8.82 -93.67 -0.83 -12.97 16 17 C 0.03 0.76 11.13 113.37 1.26 2.02 16 18 C -0.05 -1.68 5.89 -19.80 -0.12 -1.80 16 19 C -0.10 -2.24 8.96 71.24 0.64 -1.60 16 20 C -0.14 -4.45 5.90 -19.72 -0.12 -4.57 16 21 C -0.09 -2.09 8.96 71.24 0.64 -1.46 16 22 H 0.04 1.50 7.66 -2.39 -0.02 1.48 16 23 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 24 H 0.04 1.41 7.66 -2.39 -0.02 1.39 16 25 H 0.13 6.43 3.25 -2.91 -0.01 6.42 16 26 H 0.28 15.28 8.31 -92.70 -0.77 14.51 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.63 7.51 -2.39 -0.02 1.62 16 32 H 0.09 1.59 6.70 -2.39 -0.02 1.58 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 1.54 7.52 -2.39 -0.02 1.52 16 35 H 0.09 1.57 6.70 -2.39 -0.02 1.55 16 Total: -1.00 -68.14 301.83 5.61 -62.53 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 1.07 Total: 14.75 kcal Atomic # 6 Polarization: -45.95 SS G_CDS: 5.13 Total: -40.82 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.30 Total: -53.37 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -1.71 Total: -24.79 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.90 Total: 44.33 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -1.08 Total: -2.63 kcal Total: -68.14 5.61 -62.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259087554.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.835 kcal (2) G-P(sol) polarization free energy of solvation -68.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds