Wall clock time and date at job start Mon Mar 30 2020 07:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99493 * 359.97438 * 4 3 2 6 6 S 1.76197 * 120.00083 * 180.02562 * 5 4 3 7 7 O 1.42104 * 104.27829 * 231.07165 * 6 5 4 8 8 O 1.42098 * 104.27553 * 358.92635 * 6 5 4 9 9 C 1.81393 * 104.45378 * 114.99812 * 6 5 4 10 10 C 1.50696 * 109.47738 * 179.97438 * 9 6 5 11 11 H 1.08004 * 119.99622 * 0.02562 * 10 9 6 12 12 C 1.37873 * 120.00276 * 179.97438 * 10 9 6 13 13 N 1.31524 * 119.99892 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 120.00323 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47197 * 89.99478 * 14 12 10 16 16 H 1.48499 * 109.47444 * 209.99592 * 14 12 10 17 17 H 1.48499 * 109.46811 * 329.99962 * 14 12 10 18 18 C 1.38214 * 120.00052 * 0.02562 * 5 4 3 19 19 C 1.50704 * 119.99716 * 180.02562 * 18 5 4 20 20 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 21 21 C 1.50695 * 119.99818 * 0.02562 * 20 2 1 22 22 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 25 25 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 26 26 H 1.07994 * 120.00533 * 180.02562 * 4 3 2 27 27 H 1.09003 * 109.46935 * 300.00261 * 9 6 5 28 28 H 1.09002 * 109.47443 * 59.99994 * 9 6 5 29 29 H 0.97003 * 119.99876 * 180.02562 * 13 12 10 30 30 H 1.08997 * 109.47102 * 90.00252 * 19 18 5 31 31 H 1.09003 * 109.47073 * 209.99489 * 19 18 5 32 32 H 1.08994 * 109.47393 * 329.99446 * 19 18 5 33 33 H 1.08995 * 109.47734 * 90.00064 * 21 20 2 34 34 H 1.09002 * 109.46829 * 210.00009 * 21 20 2 35 35 H 1.09000 * 109.47496 * 329.99322 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 16 6.0337 0.0000 0.0030 7 8 6.3850 -0.8658 -1.0677 8 8 6.3841 1.3768 -0.0232 9 6 6.4852 -0.7416 1.5956 10 6 7.9863 -0.7979 1.7161 11 1 8.6067 -0.4245 0.9148 12 6 8.5676 -1.3252 2.8497 13 7 9.8777 -1.3738 2.9550 14 14 7.4946 -1.9704 4.2359 15 1 7.2105 -3.4108 4.0126 16 1 8.2026 -1.8004 5.5302 17 1 6.2176 -1.2131 4.2669 18 6 3.5806 -1.1969 0.0016 19 6 4.3342 -2.5020 0.0034 20 6 2.1981 -1.1970 0.0058 21 6 1.4446 -2.5020 0.0116 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5139 25 1 1.6583 2.1327 -0.0004 26 1 4.1204 2.1326 0.0010 27 1 6.0776 -0.1375 2.4062 28 1 6.0782 -1.7511 1.6548 29 1 10.2867 -1.7451 3.7524 30 1 4.5147 -2.8160 1.0314 31 1 3.7457 -3.2621 -0.5106 32 1 5.2871 -2.3721 -0.5095 33 1 1.2633 -2.8215 -1.0146 34 1 2.0335 -3.2593 0.5292 35 1 0.4920 -2.3694 0.5245 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259205557.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:48 Heat of formation + Delta-G solvation = -58.964591 kcal Electronic energy + Delta-G solvation = -18681.950312 eV Core-core repulsion = 15771.890851 eV Total energy + Delta-G solvation = -2910.059462 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.76674 -36.37399 -35.12983 -33.78281 -33.41029 -33.18609 -29.89291 -28.54608 -26.93688 -26.22528 -23.12500 -21.25257 -20.89623 -18.18830 -17.49859 -16.44656 -16.37573 -15.45733 -14.90373 -14.77992 -14.56095 -14.20533 -13.81857 -13.33728 -13.00462 -12.92529 -12.80018 -12.74567 -12.56093 -12.38556 -11.95461 -11.65224 -11.60118 -11.51426 -11.23690 -10.99740 -10.87150 -10.83813 -10.37732 -10.07347 -9.84531 -9.44400 -8.86001 -8.79838 -8.52285 -6.33688 -4.42946 0.85379 1.10779 1.38515 3.12417 3.21205 3.21931 3.49332 3.81640 4.19770 4.56573 4.62756 4.74971 4.83953 4.89600 4.98866 5.15490 5.21395 5.32456 5.35003 5.48990 5.55110 5.66771 5.69872 5.75843 5.81489 5.99110 6.08862 6.14797 6.23132 6.30078 6.44633 6.48906 6.56307 6.99678 7.15044 7.98592 8.58091 9.20847 10.77237 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.023503 B = 0.006704 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.028966 B = 4175.791508 C = 4628.145202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.043 4.043 3 C -0.150 4.150 4 C -0.023 4.023 5 C -0.661 4.661 6 S 2.490 3.510 7 O -0.950 6.950 8 O -0.955 6.955 9 C -0.451 4.451 10 C -0.534 4.534 11 H 0.088 0.912 12 C 0.091 3.909 13 N -0.878 5.878 14 Si 0.878 3.122 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.262 1.262 18 C 0.020 3.980 19 C -0.180 4.180 20 C -0.116 4.116 21 C -0.117 4.117 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.127 0.873 26 H 0.144 0.856 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.272 0.728 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.772 -0.677 -2.974 19.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.043 4.043 3 C -0.168 4.168 4 C -0.042 4.042 5 C -0.744 4.744 6 S 2.673 3.327 7 O -0.947 6.947 8 O -0.952 6.952 9 C -0.585 4.585 10 C -0.573 4.573 11 H 0.106 0.894 12 C -0.116 4.116 13 N -0.514 5.514 14 Si 0.703 3.297 15 H -0.195 1.195 16 H -0.205 1.205 17 H -0.186 1.186 18 C 0.019 3.981 19 C -0.236 4.236 20 C -0.117 4.117 21 C -0.173 4.173 22 H 0.092 0.908 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.145 0.855 26 H 0.161 0.839 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.131 0.869 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.145 -0.406 -3.558 18.495 hybrid contribution -1.148 -0.480 1.331 1.822 sum -19.293 -0.886 -2.226 19.441 Atomic orbital electron populations 1.20942 0.91132 1.03092 1.02583 1.19960 0.95920 0.92831 0.95579 1.21070 0.94209 0.97514 1.04037 1.20972 0.94346 0.97095 0.91746 1.30933 1.27988 0.98431 1.17062 1.05785 0.72568 0.75219 0.79114 1.93426 1.81522 1.67418 1.52329 1.93445 1.81467 1.32449 1.87849 1.28019 1.07729 1.07972 1.14812 1.20091 0.85170 1.45270 1.06745 0.89365 1.24847 0.94933 0.94055 0.97732 1.69865 1.09262 1.43377 1.28878 0.86793 0.81176 0.80035 0.81667 1.19454 1.20507 1.18595 1.19433 0.93300 0.93833 0.91533 1.21775 1.03467 0.94157 1.04220 1.19678 0.93108 0.95162 1.03730 1.20876 0.99846 0.94196 1.02400 0.90766 0.91335 0.90867 0.85521 0.83869 0.89332 0.89679 0.91788 0.89489 0.89903 0.86947 0.91131 0.91012 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.61 36.01 0.35 -0.70 16 2 C -0.04 -0.54 5.88 -104.62 -0.62 -1.16 16 3 C -0.15 -2.01 9.70 -39.58 -0.38 -2.39 16 4 C -0.02 -0.37 9.50 -39.58 -0.38 -0.75 16 5 C -0.66 -11.87 5.58 -39.58 -0.22 -12.09 16 6 S 2.49 53.15 4.48 -107.50 -0.48 52.67 16 7 O -0.95 -21.88 15.36 -57.54 -0.88 -22.77 16 8 O -0.95 -22.40 16.74 -57.54 -0.96 -23.36 16 9 C -0.45 -10.12 4.60 36.00 0.17 -9.95 16 10 C -0.53 -14.72 9.68 -34.44 -0.33 -15.06 16 11 H 0.09 2.62 7.96 -52.48 -0.42 2.20 16 12 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 13 N -0.88 -25.75 13.96 55.43 0.77 -24.98 16 14 Si 0.88 20.09 27.47 -169.99 -4.67 15.42 16 15 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 18 C 0.02 0.32 5.86 -104.62 -0.61 -0.29 16 19 C -0.18 -2.72 7.63 36.01 0.27 -2.45 16 20 C -0.12 -1.59 5.88 -104.63 -0.62 -2.20 16 21 C -0.12 -1.18 8.78 36.00 0.32 -0.86 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 24 H 0.07 0.55 5.94 -51.93 -0.31 0.24 16 25 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 26 H 0.14 2.22 7.21 -52.49 -0.38 1.84 16 27 H 0.09 1.86 7.20 -51.92 -0.37 1.49 16 28 H 0.09 1.71 5.43 -51.92 -0.28 1.43 16 29 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 30 H 0.09 1.20 7.10 -51.93 -0.37 0.83 16 31 H 0.08 1.01 6.72 -51.93 -0.35 0.66 16 32 H 0.11 1.95 4.89 -51.93 -0.25 1.70 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.69 6.72 -51.93 -0.35 0.34 16 35 H 0.07 0.57 5.94 -51.93 -0.31 0.26 16 LS Contribution 292.80 15.07 4.41 4.41 Total: -1.00 -33.22 292.80 -8.21 -41.43 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -4.24 Total: 2.64 kcal Atomic # 6 Polarization: -43.32 SS G_CDS: -2.15 Total: -45.47 kcal Atomic # 7 Polarization: -25.75 SS G_CDS: 0.77 Total: -24.98 kcal Atomic # 8 Polarization: -44.28 SS G_CDS: -1.85 Total: -46.13 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.67 Total: 15.42 kcal Atomic # 16 Polarization: 53.15 SS G_CDS: -0.48 Total: 52.67 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.22 -8.21 -41.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259205557.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.533 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds