Wall clock time and date at job start Mon Mar 30 2020 07:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99493 * 359.97438 * 4 3 2 6 6 S 1.76197 * 120.00083 * 180.02562 * 5 4 3 7 7 O 1.42104 * 104.27829 * 231.07165 * 6 5 4 8 8 O 1.42098 * 104.27553 * 358.92635 * 6 5 4 9 9 C 1.81393 * 104.45378 * 114.99812 * 6 5 4 10 10 C 1.50696 * 109.47738 * 179.97438 * 9 6 5 11 11 H 1.08004 * 119.99622 * 0.02562 * 10 9 6 12 12 C 1.37873 * 120.00276 * 179.97438 * 10 9 6 13 13 N 1.31524 * 119.99892 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 120.00323 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47197 * 89.99478 * 14 12 10 16 16 H 1.48499 * 109.47444 * 209.99592 * 14 12 10 17 17 H 1.48499 * 109.46811 * 329.99962 * 14 12 10 18 18 C 1.38214 * 120.00052 * 0.02562 * 5 4 3 19 19 C 1.50704 * 119.99716 * 180.02562 * 18 5 4 20 20 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 21 21 C 1.50695 * 119.99818 * 0.02562 * 20 2 1 22 22 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 25 25 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 26 26 H 1.07994 * 120.00533 * 180.02562 * 4 3 2 27 27 H 1.09003 * 109.46935 * 300.00261 * 9 6 5 28 28 H 1.09002 * 109.47443 * 59.99994 * 9 6 5 29 29 H 0.97003 * 119.99876 * 180.02562 * 13 12 10 30 30 H 1.08997 * 109.47102 * 90.00252 * 19 18 5 31 31 H 1.09003 * 109.47073 * 209.99489 * 19 18 5 32 32 H 1.08994 * 109.47393 * 329.99446 * 19 18 5 33 33 H 1.08995 * 109.47734 * 90.00064 * 21 20 2 34 34 H 1.09002 * 109.46829 * 210.00009 * 21 20 2 35 35 H 1.09000 * 109.47496 * 329.99322 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 16 6.0337 0.0000 0.0030 7 8 6.3850 -0.8658 -1.0677 8 8 6.3841 1.3768 -0.0232 9 6 6.4852 -0.7416 1.5956 10 6 7.9863 -0.7979 1.7161 11 1 8.6067 -0.4245 0.9148 12 6 8.5676 -1.3252 2.8497 13 7 9.8777 -1.3738 2.9550 14 14 7.4946 -1.9704 4.2359 15 1 7.2105 -3.4108 4.0126 16 1 8.2026 -1.8004 5.5302 17 1 6.2176 -1.2131 4.2669 18 6 3.5806 -1.1969 0.0016 19 6 4.3342 -2.5020 0.0034 20 6 2.1981 -1.1970 0.0058 21 6 1.4446 -2.5020 0.0116 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5139 25 1 1.6583 2.1327 -0.0004 26 1 4.1204 2.1326 0.0010 27 1 6.0776 -0.1375 2.4062 28 1 6.0782 -1.7511 1.6548 29 1 10.2867 -1.7451 3.7524 30 1 4.5147 -2.8160 1.0314 31 1 3.7457 -3.2621 -0.5106 32 1 5.2871 -2.3721 -0.5095 33 1 1.2633 -2.8215 -1.0146 34 1 2.0335 -3.2593 0.5292 35 1 0.4920 -2.3694 0.5245 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259205557.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:48 Heat of formation + Delta-G solvation = -81.981305 kcal Electronic energy + Delta-G solvation = -18682.948392 eV Core-core repulsion = 15771.890851 eV Total energy + Delta-G solvation = -2911.057541 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.83531 -38.12278 -36.89430 -35.39017 -34.77085 -34.37940 -31.83015 -29.46256 -27.99890 -27.18743 -25.11113 -22.43116 -21.95671 -19.79695 -19.39516 -18.01975 -17.65140 -17.24857 -16.33239 -16.07655 -15.91804 -15.56391 -14.95454 -14.71518 -14.48526 -14.13658 -13.99438 -13.74280 -13.59129 -13.51132 -13.49406 -13.06780 -13.03525 -12.83590 -12.63905 -12.54602 -12.24817 -12.17581 -11.93841 -11.86652 -11.46045 -11.17762 -10.92920 -9.91255 -9.59839 -8.44981 -6.62124 -0.72395 -0.15707 0.29077 1.33130 1.36565 1.47700 2.20436 2.27759 2.40717 2.85349 2.96685 3.37311 3.67212 3.82508 3.86394 4.15574 4.18729 4.34336 4.44322 4.49367 4.55862 4.66053 4.66232 4.73691 4.85668 4.93351 4.95798 5.07186 5.14885 5.18160 5.26744 5.29936 5.40627 5.56068 5.81838 5.96601 6.41474 7.05998 8.70314 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.023503 B = 0.006704 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.028966 B = 4175.791508 C = 4628.145202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.036 4.036 3 C -0.147 4.147 4 C -0.045 4.045 5 C -0.673 4.673 6 S 2.496 3.504 7 O -0.979 6.979 8 O -0.990 6.990 9 C -0.457 4.457 10 C -0.557 4.557 11 H 0.041 0.959 12 C 0.029 3.971 13 N -0.930 5.930 14 Si 0.945 3.055 15 H -0.249 1.249 16 H -0.276 1.276 17 H -0.234 1.234 18 C 0.003 3.997 19 C -0.187 4.187 20 C -0.118 4.118 21 C -0.119 4.119 22 H 0.090 0.910 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.159 0.841 26 H 0.138 0.862 27 H 0.107 0.893 28 H 0.113 0.887 29 H 0.277 0.723 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.686 -1.783 -1.814 23.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.036 4.036 3 C -0.166 4.166 4 C -0.064 4.064 5 C -0.762 4.762 6 S 2.684 3.316 7 O -0.977 6.977 8 O -0.988 6.988 9 C -0.591 4.591 10 C -0.595 4.595 11 H 0.059 0.941 12 C -0.173 4.173 13 N -0.567 5.567 14 Si 0.765 3.235 15 H -0.173 1.173 16 H -0.201 1.201 17 H -0.157 1.157 18 C 0.002 3.998 19 C -0.243 4.243 20 C -0.119 4.119 21 C -0.175 4.175 22 H 0.108 0.892 23 H 0.102 0.898 24 H 0.109 0.891 25 H 0.177 0.823 26 H 0.155 0.845 27 H 0.125 0.875 28 H 0.131 0.869 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -22.997 -1.506 -2.414 23.173 hybrid contribution 0.288 -0.091 0.862 0.913 sum -22.710 -1.597 -1.552 22.819 Atomic orbital electron populations 1.21065 0.87687 1.04809 1.04034 1.20530 0.98338 0.91960 0.92783 1.21455 0.92905 0.99609 1.02636 1.21118 0.95993 0.96260 0.93037 1.30153 1.24399 1.00422 1.21267 1.05000 0.74366 0.73993 0.78246 1.93388 1.83385 1.67809 1.53082 1.93386 1.83399 1.33947 1.88024 1.28009 1.04358 1.10129 1.16561 1.20322 0.87883 1.45366 1.05930 0.94101 1.25966 0.96466 0.94005 1.00841 1.70014 1.11683 1.44827 1.30219 0.85735 0.79981 0.80540 0.77268 1.17324 1.20063 1.15725 1.19661 0.94810 0.93156 0.92210 1.21837 1.02533 0.94884 1.05042 1.20127 0.92099 0.97435 1.02238 1.21004 1.00541 0.92224 1.03700 0.89168 0.89755 0.89139 0.82325 0.84464 0.87470 0.86892 0.91331 0.88236 0.86943 0.89901 0.89806 0.90485 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 9.61 71.24 0.68 -0.70 16 2 C -0.04 -0.75 5.88 -19.87 -0.12 -0.87 16 3 C -0.15 -3.50 9.70 22.27 0.22 -3.29 16 4 C -0.05 -1.43 9.50 22.27 0.21 -1.22 16 5 C -0.67 -24.02 5.58 22.27 0.12 -23.89 16 6 S 2.50 111.45 4.48 -56.49 -0.25 111.20 16 7 O -0.98 -47.82 15.36 -127.65 -1.96 -49.78 16 8 O -0.99 -49.33 16.74 -127.65 -2.14 -51.47 16 9 C -0.46 -20.81 4.60 71.23 0.33 -20.48 16 10 C -0.56 -32.17 9.68 25.60 0.25 -31.92 16 11 H 0.04 2.65 7.96 -2.91 -0.02 2.62 16 12 C 0.03 1.65 5.47 84.65 0.46 2.11 16 13 N -0.93 -56.82 13.96 21.45 0.30 -56.52 16 14 Si 0.94 40.59 27.47 68.60 1.88 42.47 16 15 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 16 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 17 H -0.23 -8.97 6.54 99.48 0.65 -8.32 16 18 C 0.00 0.08 5.86 -19.87 -0.12 -0.03 16 19 C -0.19 -5.36 7.63 71.24 0.54 -4.81 16 20 C -0.12 -2.78 5.88 -19.87 -0.12 -2.90 16 21 C -0.12 -1.80 8.78 71.23 0.63 -1.18 16 22 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 24 H 0.09 0.78 5.94 -2.38 -0.01 0.77 16 25 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 26 H 0.14 4.35 7.21 -2.91 -0.02 4.33 16 27 H 0.11 4.44 7.20 -2.39 -0.02 4.42 16 28 H 0.11 4.46 5.43 -2.39 -0.01 4.45 16 29 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 30 H 0.10 2.52 7.10 -2.39 -0.02 2.50 16 31 H 0.11 2.44 6.72 -2.39 -0.02 2.42 16 32 H 0.08 2.91 4.89 -2.39 -0.01 2.90 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.12 6.72 -2.39 -0.02 1.10 16 35 H 0.09 0.98 5.94 -2.39 -0.01 0.96 16 Total: -1.00 -77.15 292.80 1.98 -75.17 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 1.05 Total: 18.10 kcal Atomic # 6 Polarization: -92.27 SS G_CDS: 3.09 Total: -89.18 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.30 Total: -56.52 kcal Atomic # 8 Polarization: -97.15 SS G_CDS: -4.10 Total: -101.25 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 1.88 Total: 42.47 kcal Atomic # 16 Polarization: 111.45 SS G_CDS: -0.25 Total: 111.20 kcal Total: -77.15 1.98 -75.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259205557.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.809 kcal (2) G-P(sol) polarization free energy of solvation -77.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds