Wall clock time and date at job start Mon Mar 30 2020 06:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35898 * 117.00056 * 2 1 4 4 C 1.38761 * 120.04927 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.97136 * 179.70557 * 4 3 2 6 6 C 1.38272 * 120.06549 * 0.55638 * 5 4 3 7 7 C 1.50696 * 119.94913 * 179.72231 * 6 5 4 8 8 C 1.50699 * 113.56705 * 225.45043 * 7 6 5 9 9 H 1.07998 * 120.00018 * 4.60536 * 8 7 6 10 10 C 1.37874 * 120.00258 * 184.61193 * 8 7 6 11 11 N 1.31517 * 120.00108 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00386 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47030 * 89.99590 * 12 10 8 14 14 H 1.48497 * 109.47763 * 210.00030 * 12 10 8 15 15 H 1.48507 * 109.46807 * 330.00166 * 12 10 8 16 16 C 1.53371 * 114.56955 * 359.72468 * 7 6 5 17 17 O 1.43355 * 88.44428 * 86.60699 * 16 7 6 18 18 C 1.43353 * 88.32141 * 28.15429 * 17 16 7 19 19 C 1.38364 * 120.09773 * 359.44545 * 6 5 4 20 20 Cl 1.73594 * 119.98373 * 180.29512 * 19 6 5 21 21 C 1.38278 * 120.02765 * 0.27725 * 19 6 5 22 22 H 1.08998 * 109.46765 * 60.00758 * 1 2 3 23 23 H 1.08995 * 109.46977 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47022 * 300.00256 * 1 2 3 25 25 H 1.08002 * 120.01297 * 0.02562 * 4 3 2 26 26 H 1.07998 * 119.97015 * 180.27331 * 5 4 3 27 27 H 0.97000 * 120.00236 * 179.97438 * 11 10 8 28 28 H 1.08995 * 113.38857 * 331.71209 * 16 7 6 29 29 H 1.08995 * 113.39342 * 201.50700 * 16 7 6 30 30 H 1.08997 * 113.39254 * 86.74881 * 18 17 16 31 31 H 1.09001 * 113.38772 * 216.94645 * 18 17 16 32 32 H 1.08007 * 120.03464 * 179.97438 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9201 3.6051 0.0067 6 6 3.3009 3.6772 0.0007 7 6 3.9841 5.0204 0.0011 8 6 5.1165 5.1206 -0.9881 9 1 5.3189 4.3015 -1.6622 10 6 5.8945 6.2581 -1.0325 11 7 5.6479 7.2559 -0.2120 12 14 7.2987 6.3821 -2.2582 13 1 6.7990 6.9743 -3.5251 14 1 8.3704 7.2439 -1.6979 15 1 7.8429 5.0266 -2.5262 16 6 3.0300 6.2212 0.0018 17 8 2.9881 6.1374 1.4322 18 6 4.3050 5.5722 1.3956 19 6 4.0562 2.5179 0.0001 20 17 5.7896 2.6119 0.0003 21 6 3.4309 1.2846 -0.0003 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.2127 2.3199 0.0014 26 1 1.3326 4.5113 0.0116 27 1 6.1954 8.0560 -0.2430 28 1 2.0710 6.0121 -0.4722 29 1 3.4894 7.1391 -0.3647 30 1 5.0972 6.3208 1.3932 31 1 4.4630 4.7946 2.1429 32 1 4.0204 0.3796 -0.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259215742.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:02 Heat of formation + Delta-G solvation = -13.581260 kcal Electronic energy + Delta-G solvation = -18606.102197 eV Core-core repulsion = 15560.133903 eV Total energy + Delta-G solvation = -3045.968294 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.18939 -39.20811 -36.94441 -35.41997 -32.94605 -30.92787 -30.30440 -27.89658 -26.68439 -24.83191 -24.52638 -22.32339 -21.64561 -18.81297 -17.95186 -16.86807 -15.80887 -15.59856 -15.38924 -14.70871 -14.58846 -14.13981 -13.87208 -13.55181 -13.49929 -12.92730 -12.73592 -12.01076 -11.72045 -11.59349 -11.10453 -11.06297 -10.79560 -10.73220 -10.63842 -10.34947 -10.22631 -9.70895 -9.41817 -8.95792 -8.41668 -8.32905 -8.17261 -7.46437 -6.02654 -4.17652 1.63593 1.85761 2.81391 3.24490 3.32542 3.36736 3.59419 4.11588 4.34013 5.01788 5.05753 5.16286 5.21375 5.29198 5.43980 5.45583 5.73901 5.81745 5.91301 6.18841 6.37871 6.48021 6.66070 6.71547 6.87748 6.96362 7.10524 7.27139 7.51188 7.55080 7.65091 7.72871 7.92469 8.28590 8.81878 9.43861 10.88009 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.025052 B = 0.007250 C = 0.006238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.409966 B = 3861.157968 C = 4487.613647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.112 3.888 4 C -0.207 4.207 5 C -0.073 4.073 6 C -0.045 4.045 7 C 0.035 3.965 8 C -0.477 4.477 9 H 0.068 0.932 10 C 0.061 3.939 11 N -0.889 5.889 12 Si 0.896 3.104 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.272 1.272 16 C 0.034 3.966 17 O -0.405 6.405 18 C 0.034 3.966 19 C 0.013 3.987 20 Cl -0.042 7.042 21 C -0.153 4.153 22 H 0.053 0.947 23 H 0.095 0.905 24 H 0.053 0.947 25 H 0.124 0.876 26 H 0.133 0.867 27 H 0.264 0.736 28 H 0.041 0.959 29 H 0.105 0.895 30 H 0.131 0.869 31 H 0.033 0.967 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.634 -9.288 0.015 11.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.067 3.933 4 C -0.226 4.226 5 C -0.091 4.091 6 C -0.046 4.046 7 C 0.035 3.965 8 C -0.514 4.514 9 H 0.086 0.914 10 C -0.139 4.139 11 N -0.528 5.528 12 Si 0.724 3.276 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.196 1.196 16 C -0.043 4.043 17 O -0.325 6.325 18 C -0.042 4.042 19 C -0.014 4.014 20 Cl -0.013 7.013 21 C -0.172 4.172 22 H 0.072 0.928 23 H 0.113 0.887 24 H 0.072 0.928 25 H 0.142 0.858 26 H 0.151 0.849 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.122 0.878 30 H 0.148 0.852 31 H 0.051 0.949 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.496 -9.221 0.261 11.282 hybrid contribution 0.628 0.204 -0.709 0.969 sum -5.869 -9.017 -0.448 10.768 Atomic orbital electron populations 1.22979 0.78894 1.03344 1.01311 1.86009 1.20931 1.27124 1.89440 1.18629 0.91589 0.83959 0.99074 1.21188 0.99605 0.92320 1.09475 1.20948 0.93956 0.97068 0.97126 1.19655 0.92401 0.95007 0.97531 1.19464 0.94241 0.86762 0.96082 1.20993 1.11876 1.01636 1.16904 0.91391 1.24922 0.97616 0.95433 0.95953 1.69719 1.39988 1.06277 1.36856 0.86492 0.81723 0.78258 0.81119 1.20587 1.21147 1.19647 1.24009 0.96687 1.02453 0.81160 1.89506 1.33658 1.85663 1.23629 1.24251 0.87119 0.97698 0.95158 1.20421 0.86053 0.92958 1.01945 1.98368 1.08121 1.98460 1.96317 1.20097 0.91541 0.97094 1.08509 0.92815 0.88679 0.92827 0.85787 0.84904 0.92559 0.94062 0.87764 0.85195 0.94870 0.85014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.68 10.50 -19.42 -0.20 -4.88 16 3 C 0.11 1.86 6.69 -39.22 -0.26 1.60 16 4 C -0.21 -3.36 9.04 -39.43 -0.36 -3.72 16 5 C -0.07 -1.38 9.09 -39.61 -0.36 -1.74 16 6 C -0.04 -0.97 5.07 -104.57 -0.53 -1.50 16 7 C 0.04 0.84 1.06 -156.43 -0.17 0.67 16 8 C -0.48 -12.00 6.67 -34.44 -0.23 -12.23 16 9 H 0.07 1.72 6.46 -52.49 -0.34 1.38 16 10 C 0.06 1.55 5.15 -17.82 -0.09 1.45 16 11 N -0.89 -23.16 8.56 55.43 0.47 -22.69 16 12 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 C 0.03 0.81 7.11 24.61 0.17 0.98 16 17 O -0.40 -10.06 12.52 -35.23 -0.44 -10.50 16 18 C 0.03 0.85 7.64 24.61 0.19 1.04 16 19 C 0.01 0.27 6.13 -39.52 -0.24 0.02 16 20 Cl -0.04 -0.85 25.14 -51.86 -1.30 -2.16 16 21 C -0.15 -2.72 9.77 -39.40 -0.38 -3.11 16 22 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 23 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.49 7.66 -51.93 -0.40 0.10 16 25 H 0.12 1.62 6.30 -52.49 -0.33 1.29 16 26 H 0.13 2.44 5.90 -52.49 -0.31 2.13 16 27 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 28 H 0.04 0.89 6.18 -51.93 -0.32 0.57 16 29 H 0.10 2.70 6.10 -51.93 -0.32 2.38 16 30 H 0.13 3.47 5.27 -51.93 -0.27 3.20 16 31 H 0.03 0.79 8.12 -51.93 -0.42 0.37 16 32 H 0.13 2.11 8.06 -52.48 -0.42 1.68 16 LS Contribution 274.95 15.07 4.14 4.14 Total: -1.00 -27.32 274.95 -6.71 -34.03 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -3.09 Total: 2.02 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -1.27 Total: -15.23 kcal Atomic # 7 Polarization: -23.16 SS G_CDS: 0.47 Total: -22.69 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.64 Total: -15.38 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.30 Total: -2.16 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.32 -6.71 -34.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259215742.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.445 kcal (2) G-P(sol) polarization free energy of solvation -27.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds