Wall clock time and date at job start Mon Mar 30 2020 06:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35898 * 117.00056 * 2 1 4 4 C 1.38761 * 120.04927 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.97136 * 179.70557 * 4 3 2 6 6 C 1.38272 * 120.06549 * 0.55638 * 5 4 3 7 7 C 1.50696 * 119.94913 * 179.72231 * 6 5 4 8 8 C 1.50699 * 113.56705 * 225.45043 * 7 6 5 9 9 H 1.07998 * 120.00018 * 4.60536 * 8 7 6 10 10 C 1.37874 * 120.00258 * 184.61193 * 8 7 6 11 11 N 1.31517 * 120.00108 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00386 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47030 * 89.99590 * 12 10 8 14 14 H 1.48497 * 109.47763 * 210.00030 * 12 10 8 15 15 H 1.48507 * 109.46807 * 330.00166 * 12 10 8 16 16 C 1.53371 * 114.56955 * 359.72468 * 7 6 5 17 17 O 1.43355 * 88.44428 * 86.60699 * 16 7 6 18 18 C 1.43353 * 88.32141 * 28.15429 * 17 16 7 19 19 C 1.38364 * 120.09773 * 359.44545 * 6 5 4 20 20 Cl 1.73594 * 119.98373 * 180.29512 * 19 6 5 21 21 C 1.38278 * 120.02765 * 0.27725 * 19 6 5 22 22 H 1.08998 * 109.46765 * 60.00758 * 1 2 3 23 23 H 1.08995 * 109.46977 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47022 * 300.00256 * 1 2 3 25 25 H 1.08002 * 120.01297 * 0.02562 * 4 3 2 26 26 H 1.07998 * 119.97015 * 180.27331 * 5 4 3 27 27 H 0.97000 * 120.00236 * 179.97438 * 11 10 8 28 28 H 1.08995 * 113.38857 * 331.71209 * 16 7 6 29 29 H 1.08995 * 113.39342 * 201.50700 * 16 7 6 30 30 H 1.08997 * 113.39254 * 86.74881 * 18 17 16 31 31 H 1.09001 * 113.38772 * 216.94645 * 18 17 16 32 32 H 1.08007 * 120.03464 * 179.97438 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9201 3.6051 0.0067 6 6 3.3009 3.6772 0.0007 7 6 3.9841 5.0204 0.0011 8 6 5.1165 5.1206 -0.9881 9 1 5.3189 4.3015 -1.6622 10 6 5.8945 6.2581 -1.0325 11 7 5.6479 7.2559 -0.2120 12 14 7.2987 6.3821 -2.2582 13 1 6.7990 6.9743 -3.5251 14 1 8.3704 7.2439 -1.6979 15 1 7.8429 5.0266 -2.5262 16 6 3.0300 6.2212 0.0018 17 8 2.9881 6.1374 1.4322 18 6 4.3050 5.5722 1.3956 19 6 4.0562 2.5179 0.0001 20 17 5.7896 2.6119 0.0003 21 6 3.4309 1.2846 -0.0003 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.2127 2.3199 0.0014 26 1 1.3326 4.5113 0.0116 27 1 6.1954 8.0560 -0.2430 28 1 2.0710 6.0121 -0.4722 29 1 3.4894 7.1391 -0.3647 30 1 5.0972 6.3208 1.3932 31 1 4.4630 4.7946 2.1429 32 1 4.0204 0.3796 -0.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259215742.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:01 Heat of formation + Delta-G solvation = -29.340110 kcal Electronic energy + Delta-G solvation = -18606.785552 eV Core-core repulsion = 15560.133903 eV Total energy + Delta-G solvation = -3046.651649 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.81891 -40.64555 -38.33707 -36.90919 -34.87674 -32.45168 -31.75998 -29.28621 -27.90042 -26.70639 -26.45426 -23.80563 -23.03645 -20.54578 -19.20863 -18.64399 -17.25762 -17.06789 -16.61209 -16.52324 -16.07732 -15.97110 -15.55320 -15.21414 -14.82056 -14.37974 -14.14130 -13.55432 -13.08951 -12.98474 -12.94066 -12.65497 -12.50605 -12.43060 -12.04539 -11.90064 -11.78859 -11.37754 -11.19920 -10.80755 -10.32161 -10.09230 -9.72571 -8.93004 -7.96107 -6.15335 0.23764 0.43872 1.36444 1.43650 1.48022 1.55907 2.44532 2.48515 2.70525 3.12249 3.60213 3.83154 4.04380 4.15464 4.27285 4.44340 4.46275 4.50177 4.56264 4.74289 4.77876 4.90942 4.96486 5.12203 5.27867 5.32290 5.48144 5.58044 5.65879 5.71246 5.79141 5.97633 6.37412 6.43862 6.86482 7.47581 8.93298 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.025052 B = 0.007250 C = 0.006238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.409966 B = 3861.157968 C = 4487.613647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.329 6.329 3 C 0.124 3.876 4 C -0.195 4.195 5 C -0.078 4.078 6 C -0.079 4.079 7 C 0.040 3.960 8 C -0.481 4.481 9 H 0.063 0.937 10 C 0.024 3.976 11 N -0.907 5.907 12 Si 0.945 3.055 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.272 1.272 16 C 0.035 3.965 17 O -0.411 6.411 18 C 0.033 3.967 19 C 0.001 3.999 20 Cl -0.056 7.056 21 C -0.158 4.158 22 H 0.065 0.935 23 H 0.123 0.877 24 H 0.064 0.936 25 H 0.162 0.838 26 H 0.136 0.864 27 H 0.262 0.738 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.034 0.966 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.281 -10.999 -0.487 13.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.078 3.922 4 C -0.214 4.214 5 C -0.097 4.097 6 C -0.080 4.080 7 C 0.039 3.961 8 C -0.518 4.518 9 H 0.081 0.919 10 C -0.174 4.174 11 N -0.548 5.548 12 Si 0.772 3.228 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.197 1.197 16 C -0.042 4.042 17 O -0.331 6.331 18 C -0.044 4.044 19 C -0.026 4.026 20 Cl -0.026 7.026 21 C -0.177 4.177 22 H 0.084 0.916 23 H 0.141 0.859 24 H 0.083 0.917 25 H 0.179 0.821 26 H 0.153 0.847 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.127 0.873 31 H 0.052 0.948 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.158 -10.944 -0.244 13.652 hybrid contribution 1.003 0.620 -0.528 1.292 sum -7.155 -10.324 -0.772 12.585 Atomic orbital electron populations 1.23393 0.76190 1.05759 1.02409 1.86026 1.23635 1.25809 1.88806 1.18693 0.91308 0.85001 0.97171 1.21479 1.01427 0.90956 1.07507 1.21025 0.92971 0.98427 0.97237 1.19584 0.93654 0.94001 1.00783 1.19369 0.93919 0.88202 0.94617 1.21143 1.12395 1.01288 1.17017 0.91916 1.25481 0.99363 0.95354 0.97211 1.69843 1.40614 1.06512 1.37811 0.85734 0.79588 0.77967 0.79549 1.20260 1.21203 1.19660 1.23915 0.97892 1.01678 0.80705 1.89474 1.33570 1.85684 1.24333 1.24117 0.86550 0.97258 0.96449 1.20503 0.85453 0.93617 1.03051 1.98352 1.09271 1.98524 1.96480 1.20254 0.92603 0.96666 1.08192 0.91600 0.85864 0.91707 0.82095 0.84670 0.92775 0.91687 0.90095 0.87290 0.94759 0.83601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.33 -8.33 10.50 -92.41 -0.97 -9.30 16 3 C 0.12 3.74 6.69 22.50 0.15 3.89 16 4 C -0.20 -5.68 9.04 22.37 0.20 -5.48 16 5 C -0.08 -2.82 9.09 22.25 0.20 -2.62 16 6 C -0.08 -3.35 5.07 -19.83 -0.10 -3.45 16 7 C 0.04 1.89 1.06 -53.43 -0.06 1.84 16 8 C -0.48 -24.41 6.67 25.60 0.17 -24.24 16 9 H 0.06 3.20 6.46 -2.91 -0.02 3.18 16 10 C 0.02 1.23 5.15 84.65 0.44 1.66 16 11 N -0.91 -48.23 8.56 21.45 0.18 -48.04 16 12 Si 0.94 41.82 29.54 68.60 2.03 43.85 16 13 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 14 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 16 C 0.04 1.68 7.11 63.85 0.45 2.13 16 17 O -0.41 -20.51 12.52 -148.98 -1.87 -22.38 16 18 C 0.03 1.67 7.64 63.85 0.49 2.16 16 19 C 0.00 0.03 6.13 22.31 0.14 0.16 16 20 Cl -0.06 -2.26 25.14 -2.72 -0.07 -2.33 16 21 C -0.16 -5.33 9.77 22.39 0.22 -5.12 16 22 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 23 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.06 0.89 7.66 -2.39 -0.02 0.87 16 25 H 0.16 3.42 6.30 -2.91 -0.02 3.40 16 26 H 0.14 4.71 5.90 -2.91 -0.02 4.69 16 27 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 28 H 0.07 2.75 6.18 -2.39 -0.01 2.74 16 29 H 0.08 4.26 6.10 -2.39 -0.01 4.25 16 30 H 0.11 6.00 5.27 -2.39 -0.01 5.99 16 31 H 0.03 1.67 8.12 -2.39 -0.02 1.65 16 32 H 0.15 4.40 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -58.31 274.95 3.88 -54.43 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.16 Total: 11.46 kcal Atomic # 6 Polarization: -31.11 SS G_CDS: 3.41 Total: -27.69 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 0.18 Total: -48.04 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -2.84 Total: -31.68 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -0.07 Total: -2.33 kcal Total: -58.31 3.88 -54.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259215742.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.090 kcal (2) G-P(sol) polarization free energy of solvation -58.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds