Wall clock time and date at job start Mon Mar 30 2020 07:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76200 * 102.99995 * 2 1 4 4 S 1.75509 * 124.90723 * 0.10802 * 3 2 1 5 5 C 1.75463 * 90.98890 * 180.22784 * 4 3 2 6 6 C 1.50696 * 124.77487 * 179.81046 * 5 4 3 7 7 C 1.50704 * 109.47204 * 269.98084 * 6 5 4 8 8 H 1.07995 * 120.00404 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99745 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99839 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00451 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47444 * 89.99577 * 11 9 7 13 13 H 1.48494 * 109.47228 * 209.99911 * 11 9 7 14 14 H 1.48506 * 109.46921 * 330.00012 * 11 9 7 15 15 C 1.33881 * 110.45777 * 359.79260 * 5 4 3 16 16 C 1.34757 * 124.91039 * 180.02562 * 3 2 1 17 17 C 1.52336 * 122.85045 * 0.02562 * 16 3 2 18 18 C 1.52991 * 108.59884 * 162.68979 * 17 16 3 19 19 C 1.53061 * 109.29525 * 51.37474 * 18 17 16 20 20 C 1.52374 * 122.74580 * 180.08201 * 15 5 4 21 21 H 1.08995 * 109.46960 * 59.99957 * 1 2 3 22 22 H 1.08997 * 109.46770 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47148 * 299.99878 * 1 2 3 24 24 H 1.08999 * 109.46875 * 29.97920 * 6 5 4 25 25 H 1.09000 * 109.47311 * 149.97592 * 6 5 4 26 26 H 0.96999 * 120.00074 * 180.02562 * 10 9 7 27 27 H 1.09004 * 109.61156 * 282.42161 * 17 16 3 28 28 H 1.08999 * 109.61366 * 42.77679 * 17 16 3 29 29 H 1.09004 * 109.50095 * 171.31869 * 18 17 16 30 30 H 1.09000 * 109.49922 * 291.39027 * 18 17 16 31 31 H 1.08995 * 109.49989 * 47.40989 * 19 18 17 32 32 H 1.09006 * 109.49611 * 167.50827 * 19 18 17 33 33 H 1.09002 * 109.60150 * 43.14211 * 20 15 5 34 34 H 1.08997 * 109.62795 * 282.60767 * 20 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 16 1.0339 3.0192 0.0027 5 6 2.3154 4.2177 -0.0061 6 6 2.0977 5.7088 -0.0125 7 6 2.0220 6.1994 -1.4355 8 1 2.1220 5.5013 -2.2534 9 6 1.8250 7.5395 -1.6931 10 7 1.7594 7.9677 -2.9349 11 14 1.6527 8.7472 -0.2784 12 1 2.9924 9.2699 0.0922 13 1 0.7791 9.8740 -0.6932 14 1 1.0498 8.0576 0.8905 15 6 3.5140 3.6212 -0.0060 16 6 3.4606 2.2197 -0.0005 17 6 4.7048 1.3407 -0.0017 18 6 5.9019 2.1901 -0.4334 19 6 5.9523 3.4620 0.4165 20 6 4.8229 4.4012 -0.0110 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.1657 5.9421 0.5023 25 1 2.9269 6.1993 0.4973 26 1 1.6213 8.9105 -3.1162 27 1 4.8768 0.9487 1.0008 28 1 4.5684 0.5144 -0.6993 29 1 6.8212 1.6216 -0.2924 30 1 5.7975 2.4582 -1.4848 31 1 5.8309 3.2020 1.4680 32 1 6.9122 3.9581 0.2723 33 1 4.7546 5.2346 0.6883 34 1 5.0210 4.7776 -1.0146 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259933435.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:55 Heat of formation + Delta-G solvation = 1.326889 kcal Electronic energy + Delta-G solvation = -16072.845772 eV Core-core repulsion = 13608.153616 eV Total energy + Delta-G solvation = -2464.692156 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -38.89634 -34.33429 -33.19522 -31.84491 -29.48244 -29.02079 -26.30400 -24.95910 -22.81595 -21.16589 -19.94154 -17.72574 -16.89064 -16.67814 -16.00161 -14.68518 -14.56031 -14.10355 -13.75902 -13.48082 -13.39021 -13.01467 -12.91733 -12.80459 -12.62398 -12.07028 -11.89691 -11.61110 -11.12166 -10.90996 -10.68112 -10.52127 -10.43060 -10.26147 -10.11721 -10.02977 -9.84463 -9.47321 -8.67814 -8.64074 -7.68491 -6.89614 -6.13285 -4.13281 1.53384 1.62034 1.89342 2.57888 2.81218 3.19725 3.23413 3.31721 3.33339 4.35050 5.05252 5.07802 5.08543 5.14513 5.16948 5.19480 5.49100 5.65554 5.68933 5.80674 5.89023 5.92395 6.05880 6.18619 6.22785 6.36701 6.43575 6.54842 6.67950 6.82300 6.88721 7.10513 7.29283 7.58047 8.42176 8.91601 9.45711 10.99417 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.019649 B = 0.006894 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.632489 B = 4060.715473 C = 5064.382910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 S -0.075 6.075 3 C -0.243 4.243 4 S 0.094 5.906 5 C -0.099 4.099 6 C 0.046 3.954 7 C -0.512 4.512 8 H 0.075 0.925 9 C 0.073 3.927 10 N -0.896 5.896 11 Si 0.873 3.127 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.265 1.265 15 C -0.120 4.120 16 C -0.051 4.051 17 C -0.055 4.055 18 C -0.116 4.116 19 C -0.117 4.117 20 C -0.048 4.048 21 H 0.084 0.916 22 H 0.106 0.894 23 H 0.082 0.918 24 H 0.027 0.973 25 H 0.037 0.963 26 H 0.265 0.735 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.108 -13.483 7.740 15.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 S 0.161 5.839 3 C -0.470 4.470 4 S 0.359 5.641 5 C -0.219 4.219 6 C 0.007 3.993 7 C -0.551 4.551 8 H 0.094 0.906 9 C -0.129 4.129 10 N -0.534 5.534 11 Si 0.700 3.300 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.190 1.190 15 C -0.132 4.132 16 C -0.071 4.071 17 C -0.095 4.095 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.087 4.087 21 H 0.103 0.897 22 H 0.125 0.875 23 H 0.101 0.899 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.063 -14.271 7.633 16.315 hybrid contribution 0.328 1.874 0.491 1.965 sum 2.391 -12.397 8.125 15.014 Atomic orbital electron populations 1.23664 0.95639 1.06662 1.06098 1.84727 1.05307 0.99986 1.93918 1.25542 1.00172 0.99962 1.21313 1.83902 1.09814 0.94830 1.75577 1.24710 0.93647 1.00576 1.02935 1.18415 0.97334 0.84474 0.99105 1.20872 1.50382 0.93827 0.90012 0.90644 1.24950 0.94492 0.98041 0.95452 1.69890 1.49555 1.15487 1.18480 0.86878 0.78702 0.81229 0.83219 1.19921 1.21067 1.18980 1.19270 0.95159 0.91414 1.07371 1.19266 0.92662 0.93234 1.01914 1.20543 0.91199 0.96290 1.01447 1.21509 0.97002 0.96316 1.00560 1.21549 0.98402 0.95972 0.99581 1.20470 0.89521 0.96214 1.02497 0.89685 0.87542 0.89878 0.95508 0.94475 0.92494 0.90916 0.90965 0.92040 0.91513 0.92173 0.91910 0.90951 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.81 101.05 0.99 -0.71 16 2 S -0.08 -1.06 21.94 -107.50 -2.36 -3.42 16 3 C -0.24 -4.24 6.67 29.50 0.20 -4.04 16 4 S 0.09 1.78 22.22 -107.50 -2.39 -0.61 16 5 C -0.10 -2.12 5.67 -35.84 -0.20 -2.33 16 6 C 0.05 1.09 4.20 -29.03 -0.12 0.97 16 7 C -0.51 -14.34 9.65 -34.44 -0.33 -14.67 16 8 H 0.08 2.34 7.98 -52.49 -0.42 1.92 16 9 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 10 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 11 Si 0.87 20.99 27.47 -169.99 -4.67 16.32 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 15 C -0.12 -2.35 5.74 -104.57 -0.60 -2.95 16 16 C -0.05 -0.89 5.76 -104.29 -0.60 -1.50 16 17 C -0.06 -0.79 5.60 -27.07 -0.15 -0.94 16 18 C -0.12 -1.52 5.88 -26.70 -0.16 -1.68 16 19 C -0.12 -1.61 5.87 -26.71 -0.16 -1.76 16 20 C -0.05 -0.83 5.57 -27.06 -0.15 -0.98 16 21 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 24 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 25 H 0.04 0.86 6.36 -51.93 -0.33 0.53 16 26 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 0.99 7.89 -51.93 -0.41 0.58 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 31 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.25 7.17 -51.93 -0.37 0.88 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 300.28 15.07 4.53 4.53 Total: -1.00 -29.96 300.28 -10.37 -40.33 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.87 Total: -2.25 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: -1.38 Total: -28.60 kcal Atomic # 7 Polarization: -27.07 SS G_CDS: 0.77 Total: -26.30 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -4.75 Total: -4.02 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.96 -10.37 -40.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259933435.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.657 kcal (2) G-P(sol) polarization free energy of solvation -29.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds