Wall clock time and date at job start Mon Mar 30 2020 07:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33387 * 125.20606 * 2 1 4 4 C 1.38421 * 114.92198 * 179.79034 * 3 2 1 5 5 C 1.33393 * 114.92188 * 0.42536 * 4 3 2 6 6 C 1.50699 * 125.20425 * 179.86002 * 5 4 3 7 7 C 1.52994 * 109.62672 * 89.32732 * 6 5 4 8 8 O 1.43372 * 109.63165 * 329.08424 * 6 5 4 9 9 C 1.44192 * 107.28949 * 239.45354 * 8 6 5 10 10 C 1.54917 * 103.07385 * 338.56482 * 9 8 6 11 11 H 1.09006 * 111.00899 * 277.43793 * 10 9 8 12 12 C 1.52999 * 110.97836 * 153.67118 * 10 9 8 13 13 C 1.50702 * 109.47525 * 181.20651 * 12 10 9 14 14 H 1.08002 * 119.99441 * 0.02562 * 13 12 10 15 15 C 1.37871 * 120.00075 * 180.02562 * 13 12 10 16 16 N 1.31514 * 120.00481 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99886 * 179.73007 * 15 13 12 18 18 H 1.48502 * 109.46964 * 270.27509 * 17 15 13 19 19 H 1.48505 * 109.47036 * 30.26897 * 17 15 13 20 20 H 1.48490 * 109.47395 * 150.27411 * 17 15 13 21 21 O 1.43749 * 109.62899 * 209.72224 * 6 5 4 22 22 S 1.75886 * 125.19973 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47247 * 300.00813 * 1 2 3 25 25 H 1.08999 * 109.46739 * 60.00455 * 1 2 3 26 26 H 1.07997 * 122.53488 * 0.02562 * 3 2 1 27 27 H 1.08002 * 122.54204 * 180.26464 * 4 3 2 28 28 H 1.09007 * 109.46917 * 179.69218 * 7 6 5 29 29 H 1.08999 * 109.47096 * 299.69044 * 7 6 5 30 30 H 1.09002 * 109.47425 * 59.69337 * 7 6 5 31 31 H 1.09000 * 110.69649 * 220.16943 * 9 8 6 32 32 H 1.09002 * 110.69901 * 96.95574 * 9 8 6 33 33 H 1.09009 * 109.47378 * 61.20931 * 12 10 9 34 34 H 1.08998 * 109.47458 * 301.21392 * 12 10 9 35 35 H 0.97005 * 119.99656 * 359.72741 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0046 5 6 3.9751 -0.4479 -0.0007 6 6 5.3860 -0.9772 -0.0003 7 6 5.8703 -1.1485 1.4408 8 8 6.2453 -0.0586 -0.6882 9 6 6.8362 -0.7706 -1.7942 10 6 6.6979 -2.2541 -1.3699 11 1 7.5058 -2.5455 -0.6986 12 6 6.6484 -3.1714 -2.5934 13 6 6.4841 -4.6004 -2.1437 14 1 6.4209 -4.8311 -1.0905 15 6 6.4145 -5.6130 -3.0767 16 7 6.4910 -5.3321 -4.3592 17 14 6.2185 -7.3850 -2.5189 18 1 7.5589 -7.9917 -2.3175 19 1 5.4619 -7.4211 -1.2415 20 1 5.4791 -8.1509 -3.5541 21 8 5.4264 -2.2447 -0.6773 22 16 2.5209 -1.4372 -0.0006 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8669 2.0894 0.0004 27 1 4.3721 1.6349 0.0093 28 1 6.8890 -1.5366 1.4381 29 1 5.8504 -0.1838 1.9479 30 1 5.2167 -1.8471 1.9632 31 1 7.8855 -0.4994 -1.9105 32 1 6.2837 -0.5801 -2.7143 33 1 7.5749 -3.0729 -3.1592 34 1 5.8056 -2.8900 -3.2247 35 1 6.5924 -4.4118 -4.6489 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260027054.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:43 Heat of formation + Delta-G solvation = -69.184861 kcal Electronic energy + Delta-G solvation = -18455.181981 eV Core-core repulsion = 15544.679335 eV Total energy + Delta-G solvation = -2910.502646 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.24464 -37.69241 -34.78808 -33.80917 -32.65380 -30.91905 -29.26141 -26.61416 -26.13294 -23.30088 -23.07896 -21.58306 -21.01301 -18.53102 -17.50794 -16.80649 -16.40581 -15.60874 -15.39775 -14.45056 -14.18900 -13.84376 -13.71350 -13.45499 -13.15129 -12.98295 -12.73003 -12.39039 -12.17904 -12.11009 -11.88927 -11.76362 -11.52491 -11.26288 -11.03543 -10.59602 -10.49059 -10.26762 -10.04119 -9.65688 -9.32403 -8.61013 -8.38866 -8.35945 -8.25926 -6.38125 -4.06796 1.08627 1.72468 2.19811 2.83590 3.43832 3.48752 3.64546 3.86946 4.17210 4.53724 4.85542 4.94748 5.15495 5.22032 5.30663 5.38927 5.43131 5.46310 5.50827 5.61293 5.65767 5.72745 5.85177 5.90589 6.03851 6.15401 6.24916 6.25977 6.41539 6.53201 6.60722 7.07613 7.25792 7.58539 8.12431 8.44824 8.84761 9.63225 11.02549 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.020846 B = 0.005737 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.890352 B = 4879.117057 C = 5590.209848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.197 4.197 3 C -0.146 4.146 4 C -0.117 4.117 5 C -0.189 4.189 6 C 0.319 3.681 7 C -0.159 4.159 8 O -0.379 6.379 9 C 0.019 3.981 10 C 0.068 3.932 11 H 0.075 0.925 12 C 0.015 3.985 13 C -0.592 4.592 14 H 0.053 0.947 15 C 0.015 3.985 16 N -0.913 5.913 17 Si 1.072 2.928 18 H -0.288 1.288 19 H -0.288 1.288 20 H -0.284 1.284 21 O -0.346 6.346 22 S 0.157 5.843 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.135 0.865 27 H 0.140 0.860 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.027 0.973 34 H 0.020 0.980 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.815 12.145 9.933 17.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.315 4.315 3 C -0.177 4.177 4 C -0.147 4.147 5 C -0.307 4.307 6 C 0.240 3.760 7 C -0.217 4.217 8 O -0.300 6.300 9 C -0.057 4.057 10 C 0.011 3.989 11 H 0.093 0.907 12 C -0.022 4.022 13 C -0.630 4.630 14 H 0.071 0.929 15 C -0.188 4.188 16 N -0.550 5.550 17 Si 0.900 3.100 18 H -0.214 1.214 19 H -0.214 1.214 20 H -0.210 1.210 21 O -0.267 6.267 22 S 0.422 5.578 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.153 0.847 27 H 0.157 0.843 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.038 0.962 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.375 9.059 9.447 15.023 hybrid contribution 0.623 3.173 0.442 3.264 sum -6.752 12.232 9.890 17.117 Atomic orbital electron populations 1.20281 0.88040 1.02802 1.02603 1.24714 1.00091 0.96960 1.09741 1.19950 0.92677 0.99077 1.05954 1.19898 0.95992 0.95648 1.03193 1.24597 0.97800 0.97240 1.11064 1.21219 0.84714 0.78615 0.91468 1.22299 1.02443 1.02783 0.94146 1.88790 1.61354 1.36497 1.43349 1.24417 0.98978 0.92267 0.90045 1.24103 0.84936 0.93788 0.96088 0.90711 1.19298 0.97202 0.95001 0.90703 1.21912 1.54667 0.91302 0.95161 0.92897 1.25839 0.93861 1.05234 0.93862 1.70778 1.46441 1.22520 1.15233 0.83502 0.76735 0.74588 0.75177 1.21449 1.21390 1.20968 1.89422 1.38756 1.32400 1.66102 1.84625 0.94610 1.07236 1.71297 0.91501 0.90842 0.90764 0.84696 0.84273 0.91189 0.91078 0.90683 0.88642 0.90863 0.95532 0.96201 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.38 36.01 0.37 -0.39 16 2 C -0.20 -2.62 6.51 -36.00 -0.23 -2.85 16 3 C -0.15 -1.92 10.05 -41.21 -0.41 -2.33 16 4 C -0.12 -1.75 9.64 -41.21 -0.40 -2.15 16 5 C -0.19 -3.22 5.43 -36.00 -0.20 -3.42 16 6 C 0.32 5.80 1.38 -27.89 -0.04 5.76 16 7 C -0.16 -2.43 9.17 37.15 0.34 -2.09 16 8 O -0.38 -6.80 10.37 -59.04 -0.61 -7.41 16 9 C 0.02 0.34 7.54 38.17 0.29 0.63 16 10 C 0.07 1.44 3.42 -25.72 -0.09 1.35 16 11 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 12 C 0.01 0.38 4.08 -27.88 -0.11 0.26 16 13 C -0.59 -16.95 8.96 -34.44 -0.31 -17.25 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 15 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 16 N -0.91 -27.92 13.65 55.43 0.76 -27.16 16 17 Si 1.07 25.66 29.90 -169.99 -5.08 20.58 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 O -0.35 -7.59 10.22 -59.04 -0.60 -8.19 16 22 S 0.16 2.53 22.94 -107.50 -2.47 0.07 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 27 H 0.14 1.94 7.93 -52.49 -0.42 1.52 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 32 H 0.07 1.33 8.04 -51.93 -0.42 0.91 16 33 H 0.03 0.67 8.01 -51.92 -0.42 0.26 16 34 H 0.02 0.54 8.00 -51.93 -0.42 0.12 16 35 H 0.27 8.09 7.22 -40.82 -0.29 7.79 16 LS Contribution 310.58 15.07 4.68 4.68 Total: -1.00 -31.87 310.58 -9.18 -41.05 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -4.97 Total: -1.48 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: -0.89 Total: -22.12 kcal Atomic # 7 Polarization: -27.92 SS G_CDS: 0.76 Total: -27.16 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -1.22 Total: -15.61 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.08 Total: 20.58 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -2.47 Total: 0.07 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.87 -9.18 -41.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260027054.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.135 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds