Wall clock time and date at job start Mon Mar 30 2020 07:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33388 * 125.20118 * 2 1 4 4 C 1.38430 * 114.91817 * 179.75337 * 3 2 1 5 5 C 1.33387 * 114.91775 * 0.42877 * 4 3 2 6 6 C 1.50703 * 125.19630 * 179.86096 * 5 4 3 7 7 C 1.53005 * 109.50833 * 88.58566 * 6 5 4 8 8 O 1.43743 * 109.63276 * 328.26363 * 6 5 4 9 9 C 1.44789 * 104.81895 * 215.80831 * 8 6 5 10 10 C 1.54917 * 101.71695 * 36.10407 * 9 8 6 11 11 H 1.09002 * 110.69264 * 82.83738 * 10 9 8 12 12 C 1.53002 * 110.69543 * 205.87180 * 10 9 8 13 13 C 1.50703 * 109.47128 * 182.62420 * 12 10 9 14 14 H 1.08003 * 119.99651 * 0.02562 * 13 12 10 15 15 C 1.37876 * 120.00074 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00058 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 119.99934 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47509 * 89.99719 * 17 15 13 19 19 H 1.48504 * 109.47272 * 209.99930 * 17 15 13 20 20 H 1.48507 * 109.47417 * 329.99808 * 17 15 13 21 21 O 1.43373 * 109.62890 * 208.89961 * 6 5 4 22 22 S 1.75881 * 109.59695 * 359.59650 * 5 4 3 23 23 H 1.09001 * 109.46743 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46782 * 299.99617 * 1 2 3 25 25 H 1.08999 * 109.47041 * 59.99773 * 1 2 3 26 26 H 1.08002 * 122.53942 * 359.97438 * 3 2 1 27 27 H 1.08001 * 122.53730 * 180.27731 * 4 3 2 28 28 H 1.08997 * 109.46681 * 300.37980 * 7 6 5 29 29 H 1.09002 * 109.47051 * 60.37598 * 7 6 5 30 30 H 1.08993 * 109.47031 * 180.37968 * 7 6 5 31 31 H 1.09006 * 110.97574 * 278.00497 * 9 8 6 32 32 H 1.08993 * 110.98186 * 154.21061 * 9 8 6 33 33 H 1.09001 * 109.47116 * 302.62460 * 12 10 9 34 34 H 1.09002 * 109.47453 * 62.62384 * 12 10 9 35 35 H 0.96999 * 120.00014 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8429 0.0054 5 6 3.9751 -0.4477 0.0007 6 6 5.3861 -0.9770 0.0020 7 6 5.8734 -1.1293 1.4444 8 8 6.2445 -0.0655 -0.7041 9 6 7.2027 -0.9111 -1.3847 10 6 6.3276 -2.1291 -1.7726 11 1 5.7785 -1.9313 -2.6932 12 6 7.1860 -3.3874 -1.9171 13 6 6.3191 -4.5391 -2.3568 14 1 5.2618 -4.3884 -2.5177 15 6 6.8760 -5.7848 -2.5549 16 7 6.1194 -6.7899 -2.9381 17 14 8.7048 -6.0451 -2.2774 18 1 8.9401 -6.4383 -0.8649 19 1 9.1942 -7.1193 -3.1784 20 1 9.4340 -4.7846 -2.5683 21 8 5.4235 -2.2503 -0.6560 22 16 2.5210 -1.4372 0.0005 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8669 2.0895 -0.0004 27 1 4.3721 1.6350 0.0104 28 1 5.8428 -0.1602 1.9424 29 1 5.2281 -1.8303 1.9738 30 1 6.8963 -1.5057 1.4445 31 1 8.0081 -1.2075 -0.7125 32 1 7.5986 -0.4167 -2.2717 33 1 7.9637 -3.2134 -2.6607 34 1 7.6468 -3.6250 -0.9582 35 1 6.5111 -7.6663 -3.0771 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260027071.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:54 Heat of formation + Delta-G solvation = -60.790029 kcal Electronic energy + Delta-G solvation = -18429.192492 eV Core-core repulsion = 15519.053874 eV Total energy + Delta-G solvation = -2910.138619 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.25335 -37.68110 -34.76532 -33.60106 -32.50994 -31.08130 -29.61257 -27.02935 -26.32912 -23.23430 -23.03933 -21.55766 -20.53854 -18.84226 -17.15798 -16.87049 -16.55553 -15.64778 -14.94745 -14.78194 -14.38314 -13.91176 -13.72494 -13.40371 -13.06096 -12.94389 -12.62957 -12.41701 -12.25280 -12.04094 -11.99654 -11.78905 -11.63049 -11.44001 -11.36707 -10.55474 -10.44395 -10.19871 -9.87300 -9.63234 -9.38794 -9.09623 -8.56143 -8.37319 -8.23932 -6.04393 -4.02543 1.10220 1.73402 2.22049 2.85037 3.28520 3.35795 3.36275 3.88134 4.17568 4.42401 4.85704 4.94203 5.12866 5.23980 5.25644 5.31843 5.43760 5.44896 5.50009 5.61323 5.67033 5.73578 5.86277 5.91636 5.99068 6.21901 6.24870 6.26646 6.41244 6.50477 6.61956 6.92753 7.15372 7.58638 7.73209 8.51777 9.02287 9.55686 11.09099 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.026041 B = 0.005471 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.986099 B = 5116.415552 C = 5822.659600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.199 4.199 3 C -0.147 4.147 4 C -0.118 4.118 5 C -0.191 4.191 6 C 0.321 3.679 7 C -0.159 4.159 8 O -0.373 6.373 9 C 0.015 3.985 10 C 0.072 3.928 11 H 0.080 0.920 12 C -0.012 4.012 13 C -0.513 4.513 14 H 0.076 0.924 15 C 0.068 3.932 16 N -0.900 5.900 17 Si 0.877 3.123 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.267 1.267 21 O -0.351 6.351 22 S 0.164 5.836 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.135 0.865 27 H 0.139 0.861 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.034 0.966 34 H 0.023 0.977 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.025 15.364 7.242 17.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.316 4.316 3 C -0.177 4.177 4 C -0.148 4.148 5 C -0.309 4.309 6 C 0.242 3.758 7 C -0.218 4.218 8 O -0.294 6.294 9 C -0.062 4.062 10 C 0.015 3.985 11 H 0.097 0.903 12 C -0.049 4.049 13 C -0.551 4.551 14 H 0.094 0.906 15 C -0.134 4.134 16 N -0.539 5.539 17 Si 0.704 3.296 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.191 1.191 21 O -0.272 6.272 22 S 0.430 5.570 23 H 0.085 0.915 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.152 0.848 27 H 0.157 0.843 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.052 0.948 34 H 0.041 0.959 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.444 13.642 7.255 16.382 hybrid contribution 1.416 1.241 0.010 1.883 sum -4.029 14.883 7.265 17.045 Atomic orbital electron populations 1.20282 0.88057 1.02822 1.02580 1.24731 1.00115 0.97074 1.09720 1.19955 0.92714 0.99058 1.06002 1.19913 0.95984 0.95687 1.03239 1.24630 0.97954 0.97257 1.11102 1.21222 0.84853 0.78261 0.91488 1.22303 1.02525 1.02757 0.94171 1.89150 1.43566 1.30346 1.66324 1.24631 0.92841 0.91358 0.97352 1.23859 0.89460 0.95962 0.89180 0.90257 1.19747 0.95266 0.92532 0.97349 1.20968 0.96580 0.92251 1.45255 0.90610 1.24995 0.97720 0.95951 0.94686 1.69906 1.35587 1.01192 1.47231 0.86827 0.86202 0.78120 0.78402 1.20229 1.21282 1.19133 1.89070 1.66227 1.28265 1.43622 1.84676 0.94279 1.06866 1.71186 0.91477 0.90867 0.90777 0.84766 0.84347 0.91035 0.90668 0.91178 0.90786 0.87705 0.94813 0.95923 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.38 36.01 0.37 -0.38 16 2 C -0.20 -2.59 6.51 -36.00 -0.23 -2.83 16 3 C -0.15 -1.89 10.05 -41.21 -0.41 -2.30 16 4 C -0.12 -1.72 9.65 -41.21 -0.40 -2.12 16 5 C -0.19 -3.19 5.43 -36.00 -0.20 -3.38 16 6 C 0.32 5.68 1.38 -27.88 -0.04 5.64 16 7 C -0.16 -2.41 9.17 37.16 0.34 -2.07 16 8 O -0.37 -6.40 10.53 -59.04 -0.62 -7.02 16 9 C 0.01 0.24 7.36 38.17 0.28 0.52 16 10 C 0.07 1.49 3.59 -25.72 -0.09 1.39 16 11 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 12 C -0.01 -0.27 3.81 -27.88 -0.11 -0.38 16 13 C -0.51 -14.66 9.56 -34.44 -0.33 -14.99 16 14 H 0.08 2.39 7.99 -52.48 -0.42 1.97 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 17 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 21 O -0.35 -7.49 10.10 -59.04 -0.60 -8.09 16 22 S 0.16 2.62 22.92 -107.50 -2.46 0.15 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 27 H 0.14 1.87 7.95 -52.49 -0.42 1.45 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.13 8.05 -51.93 -0.42 0.71 16 32 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 33 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 34 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 308.35 15.07 4.65 4.65 Total: -1.00 -31.87 308.35 -8.83 -40.71 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -4.99 Total: -1.01 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -0.91 Total: -19.03 kcal Atomic # 7 Polarization: -27.84 SS G_CDS: 0.77 Total: -27.07 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -1.22 Total: -15.11 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -2.46 Total: 0.15 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.87 -8.83 -40.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260027071.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.083 kcal (2) G-P(sol) polarization free energy of solvation -31.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds