Wall clock time and date at job start Mon Mar 30 2020 07:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33388 * 125.20118 * 2 1 4 4 C 1.38430 * 114.91817 * 179.75337 * 3 2 1 5 5 C 1.33387 * 114.91775 * 0.42877 * 4 3 2 6 6 C 1.50703 * 125.19630 * 179.86096 * 5 4 3 7 7 C 1.53005 * 109.50833 * 88.58566 * 6 5 4 8 8 O 1.43743 * 109.63276 * 328.26363 * 6 5 4 9 9 C 1.44789 * 104.81895 * 215.80831 * 8 6 5 10 10 C 1.54917 * 101.71695 * 36.10407 * 9 8 6 11 11 H 1.09002 * 110.69264 * 82.83738 * 10 9 8 12 12 C 1.53002 * 110.69543 * 205.87180 * 10 9 8 13 13 C 1.50703 * 109.47128 * 182.62420 * 12 10 9 14 14 H 1.08003 * 119.99651 * 0.02562 * 13 12 10 15 15 C 1.37876 * 120.00074 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00058 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 119.99934 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47509 * 89.99719 * 17 15 13 19 19 H 1.48504 * 109.47272 * 209.99930 * 17 15 13 20 20 H 1.48507 * 109.47417 * 329.99808 * 17 15 13 21 21 O 1.43373 * 109.62890 * 208.89961 * 6 5 4 22 22 S 1.75881 * 109.59695 * 359.59650 * 5 4 3 23 23 H 1.09001 * 109.46743 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46782 * 299.99617 * 1 2 3 25 25 H 1.08999 * 109.47041 * 59.99773 * 1 2 3 26 26 H 1.08002 * 122.53942 * 359.97438 * 3 2 1 27 27 H 1.08001 * 122.53730 * 180.27731 * 4 3 2 28 28 H 1.08997 * 109.46681 * 300.37980 * 7 6 5 29 29 H 1.09002 * 109.47051 * 60.37598 * 7 6 5 30 30 H 1.08993 * 109.47031 * 180.37968 * 7 6 5 31 31 H 1.09006 * 110.97574 * 278.00497 * 9 8 6 32 32 H 1.08993 * 110.98186 * 154.21061 * 9 8 6 33 33 H 1.09001 * 109.47116 * 302.62460 * 12 10 9 34 34 H 1.09002 * 109.47453 * 62.62384 * 12 10 9 35 35 H 0.96999 * 120.00014 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8429 0.0054 5 6 3.9751 -0.4477 0.0007 6 6 5.3861 -0.9770 0.0020 7 6 5.8734 -1.1293 1.4444 8 8 6.2445 -0.0655 -0.7041 9 6 7.2027 -0.9111 -1.3847 10 6 6.3276 -2.1291 -1.7726 11 1 5.7785 -1.9313 -2.6932 12 6 7.1860 -3.3874 -1.9171 13 6 6.3191 -4.5391 -2.3568 14 1 5.2618 -4.3884 -2.5177 15 6 6.8760 -5.7848 -2.5549 16 7 6.1194 -6.7899 -2.9381 17 14 8.7048 -6.0451 -2.2774 18 1 8.9401 -6.4383 -0.8649 19 1 9.1942 -7.1193 -3.1784 20 1 9.4340 -4.7846 -2.5683 21 8 5.4235 -2.2503 -0.6560 22 16 2.5210 -1.4372 0.0005 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8669 2.0895 -0.0004 27 1 4.3721 1.6350 0.0104 28 1 5.8428 -0.1602 1.9424 29 1 5.2281 -1.8303 1.9738 30 1 6.8963 -1.5057 1.4445 31 1 8.0081 -1.2075 -0.7125 32 1 7.5986 -0.4167 -2.2717 33 1 7.9637 -3.2134 -2.6607 34 1 7.6468 -3.6250 -0.9582 35 1 6.5111 -7.6663 -3.0771 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260027071.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:52 Heat of formation + Delta-G solvation = -80.640759 kcal Electronic energy + Delta-G solvation = -18430.053285 eV Core-core repulsion = 15519.053874 eV Total energy + Delta-G solvation = -2910.999411 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.64737 -38.78530 -36.28704 -35.31360 -34.11861 -32.52115 -31.01615 -28.61729 -27.45487 -24.87599 -24.26376 -22.79008 -22.29544 -20.04465 -18.89717 -18.35500 -18.06558 -16.97983 -16.49009 -16.08567 -16.04351 -15.09756 -14.98865 -14.75052 -14.62319 -14.15861 -13.96411 -13.81873 -13.69646 -13.38734 -13.24592 -13.17028 -13.00063 -12.81278 -12.47212 -12.36895 -11.92284 -11.67644 -11.56801 -11.48654 -11.04893 -10.78994 -10.71583 -9.46687 -9.45444 -8.28023 -6.33017 -0.01283 0.57953 1.10204 1.36759 1.39269 1.50055 1.77795 2.36263 2.52054 2.86460 3.08499 3.60344 3.70661 3.96174 3.98696 4.12251 4.18721 4.40380 4.47004 4.52733 4.61677 4.64994 4.73979 4.76338 4.80379 4.94180 5.05204 5.06288 5.10009 5.19521 5.28432 5.38795 5.58822 5.60512 6.16782 6.27686 6.73046 7.29310 8.89560 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.026041 B = 0.005471 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.986099 B = 5116.415552 C = 5822.659600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.179 4.179 3 C -0.151 4.151 4 C -0.105 4.105 5 C -0.220 4.220 6 C 0.314 3.686 7 C -0.155 4.155 8 O -0.373 6.373 9 C 0.026 3.974 10 C 0.066 3.934 11 H 0.060 0.940 12 C -0.006 4.006 13 C -0.524 4.524 14 H 0.021 0.979 15 C 0.002 3.998 16 N -0.954 5.954 17 Si 0.955 3.045 18 H -0.269 1.269 19 H -0.284 1.284 20 H -0.234 1.234 21 O -0.383 6.383 22 S 0.089 5.911 23 H 0.065 0.935 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.170 0.830 27 H 0.153 0.847 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.135 0.865 33 H 0.054 0.946 34 H 0.029 0.971 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.551 18.009 8.077 20.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.297 4.297 3 C -0.181 4.181 4 C -0.136 4.136 5 C -0.337 4.337 6 C 0.236 3.764 7 C -0.213 4.213 8 O -0.294 6.294 9 C -0.050 4.050 10 C 0.009 3.991 11 H 0.078 0.922 12 C -0.044 4.044 13 C -0.562 4.562 14 H 0.039 0.961 15 C -0.195 4.195 16 N -0.594 5.594 17 Si 0.777 3.223 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.157 1.157 21 O -0.305 6.305 22 S 0.354 5.646 23 H 0.084 0.916 24 H 0.116 0.884 25 H 0.110 0.890 26 H 0.187 0.813 27 H 0.170 0.830 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.153 0.847 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.973 16.326 8.097 18.651 hybrid contribution 0.764 0.469 -0.264 0.935 sum -3.209 16.795 7.832 18.807 Atomic orbital electron populations 1.20449 0.85464 1.03459 1.04497 1.25124 1.01466 0.95029 1.08056 1.20298 0.91907 1.00491 1.05356 1.20219 0.97241 0.95035 1.01141 1.24592 0.97272 0.97878 1.13975 1.21481 0.85789 0.77050 0.92111 1.22291 1.02359 1.03894 0.92787 1.89131 1.43710 1.30179 1.66354 1.24661 0.92073 0.89420 0.98864 1.23726 0.89860 0.96676 0.88832 0.92207 1.19659 0.95198 0.91806 0.97700 1.21242 0.95008 0.94678 1.45307 0.96055 1.26073 1.03920 0.95305 0.94158 1.70089 1.38442 1.01971 1.48945 0.85604 0.78863 0.79353 0.78491 1.19459 1.21000 1.15713 1.89049 1.66707 1.30824 1.43936 1.84909 0.96465 1.10264 1.72949 0.91592 0.88449 0.89029 0.81272 0.82966 0.88807 0.91293 0.90835 0.88937 0.84719 0.92788 0.95241 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 10.38 71.24 0.74 -0.61 16 2 C -0.18 -4.42 6.51 24.59 0.16 -4.26 16 3 C -0.15 -3.50 10.05 21.22 0.21 -3.29 16 4 C -0.11 -2.89 9.65 21.22 0.20 -2.68 16 5 C -0.22 -7.28 5.43 24.59 0.13 -7.15 16 6 C 0.31 10.99 1.38 29.85 0.04 11.03 16 7 C -0.16 -4.55 9.17 71.98 0.66 -3.89 16 8 O -0.37 -12.09 10.53 -126.22 -1.33 -13.42 16 9 C 0.03 0.78 7.36 72.64 0.53 1.32 16 10 C 0.07 2.73 3.59 31.25 0.11 2.84 16 11 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 12 C -0.01 -0.30 3.81 29.85 0.11 -0.18 16 13 C -0.52 -31.14 9.56 25.60 0.24 -30.90 16 14 H 0.02 1.44 7.99 -2.91 -0.02 1.42 16 15 C 0.00 0.10 5.47 84.65 0.46 0.56 16 16 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 17 Si 0.95 43.71 27.47 68.60 1.88 45.60 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 20 H -0.23 -9.45 6.54 99.48 0.65 -8.80 16 21 O -0.38 -16.86 10.10 -126.22 -1.27 -18.13 16 22 S 0.09 2.95 22.92 -56.49 -1.29 1.66 16 23 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 25 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 27 H 0.15 3.69 7.95 -2.91 -0.02 3.67 16 28 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.09 2.50 8.05 -2.38 -0.02 2.48 16 32 H 0.14 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.05 2.29 7.20 -2.39 -0.02 2.27 16 34 H 0.03 1.33 7.57 -2.39 -0.02 1.31 16 35 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -72.85 308.35 2.92 -69.93 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 1.01 Total: 12.57 kcal Atomic # 6 Polarization: -40.84 SS G_CDS: 3.62 Total: -37.22 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: 0.30 Total: -60.99 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -2.60 Total: -31.55 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.60 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -1.29 Total: 1.66 kcal Total: -72.85 2.92 -69.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260027071.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.708 kcal (2) G-P(sol) polarization free energy of solvation -72.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds