Wall clock time and date at job start Mon Mar 30 2020 08:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47005 * 2 1 4 4 C 1.50697 * 109.47271 * 239.99411 * 2 1 3 5 5 H 1.07998 * 120.00059 * 239.99959 * 4 2 1 6 6 C 1.37878 * 119.99864 * 60.00536 * 4 2 1 7 7 N 1.31523 * 119.99906 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00224 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47015 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47275 * 119.99336 * 8 6 4 11 11 H 1.48497 * 109.47183 * 239.99986 * 8 6 4 12 12 C 1.53003 * 109.46819 * 119.99664 * 2 1 3 13 13 S 1.81400 * 109.47325 * 299.99812 * 12 2 1 14 14 O 1.42107 * 110.54026 * 68.37787 * 13 12 2 15 15 O 1.42102 * 110.54546 * 291.63018 * 13 12 2 16 16 C 1.76199 * 104.45123 * 179.97438 * 13 12 2 17 17 C 1.38238 * 119.99628 * 90.00470 * 16 13 12 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 13 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00344 * 269.98304 * 16 13 12 22 22 H 1.08994 * 109.47123 * 300.00095 * 1 2 3 23 23 H 1.09003 * 109.46670 * 60.00266 * 1 2 3 24 24 H 1.09004 * 109.46967 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46477 * 179.97438 * 3 2 1 26 26 H 1.09003 * 109.46732 * 299.99691 * 3 2 1 27 27 H 1.08994 * 109.47258 * 59.99988 * 3 2 1 28 28 H 0.96995 * 119.99533 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.47183 * 180.02562 * 12 2 1 30 30 H 1.08996 * 109.47481 * 60.00529 * 12 2 1 31 31 H 1.08005 * 120.00068 * 359.97438 * 17 16 13 32 32 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 34 34 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 35 35 H 1.07999 * 119.99968 * 359.97438 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.1485 -2.2859 -3.6036 10 1 1.1680 -1.5869 -4.8164 11 1 3.1475 -0.1860 -4.8159 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1340 2.7304 14 8 0.0279 -0.0182 2.8544 15 8 2.0479 1.4102 2.8544 16 6 2.0924 -0.7966 4.0746 17 6 3.3279 -0.4708 4.6022 18 6 3.8432 -1.2005 5.6571 19 6 3.1228 -2.2557 6.1848 20 6 1.8897 -2.5849 5.6537 21 6 1.3723 -1.8522 4.6018 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8901 27 1 1.6767 1.9564 0.8899 28 1 0.7084 1.1607 -3.4844 29 1 3.1300 -0.7208 1.2496 30 1 1.6767 -1.7489 1.2494 31 1 3.8906 0.3540 4.1902 32 1 4.8086 -0.9462 6.0690 33 1 3.5253 -2.8256 7.0092 34 1 1.3288 -3.4121 6.0631 35 1 0.4067 -2.1063 4.1902 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260042151.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:20 Heat of formation + Delta-G solvation = -47.641275 kcal Electronic energy + Delta-G solvation = -18768.881755 eV Core-core repulsion = 15859.313309 eV Total energy + Delta-G solvation = -2909.568446 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.08164 -36.53052 -36.28394 -35.27285 -31.67360 -31.31150 -31.05444 -26.69400 -25.71099 -25.23689 -23.10366 -22.74844 -19.46299 -18.60308 -17.63276 -16.24994 -15.77951 -15.65303 -15.19322 -14.83160 -14.56484 -14.44812 -13.56025 -13.19449 -13.03328 -12.93507 -12.50765 -12.18606 -12.05466 -11.47391 -11.24255 -11.22270 -11.07888 -10.93437 -10.70685 -10.56576 -10.30513 -10.27409 -10.08879 -9.65536 -9.59135 -9.28864 -9.09156 -8.68179 -8.40964 -6.04298 -4.16417 0.58663 0.91179 1.24317 3.24867 3.33420 3.35979 3.39837 3.54761 4.33785 4.44228 4.53539 4.80039 4.88497 4.91332 5.21005 5.27310 5.37032 5.62946 5.69049 5.72299 5.88791 6.13037 6.15503 6.26524 6.35014 6.69766 6.78518 6.79795 6.91404 7.05200 7.31530 7.50119 7.67628 7.98314 8.08954 8.31769 8.82390 9.49148 10.96992 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.031537 B = 0.005567 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.627980 B = 5028.304855 C = 5272.908217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.080 3.920 3 C -0.165 4.165 4 C -0.502 4.502 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.557 4.557 13 S 2.476 3.524 14 O -0.944 6.944 15 O -0.944 6.944 16 C -0.657 4.657 17 C -0.027 4.027 18 C -0.144 4.144 19 C -0.076 4.076 20 C -0.144 4.144 21 C -0.026 4.026 22 H 0.030 0.970 23 H 0.095 0.905 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.095 0.905 27 H 0.030 0.970 28 H 0.262 0.738 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.142 0.858 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.922 -5.550 13.472 15.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.078 3.922 3 C -0.223 4.223 4 C -0.541 4.541 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.690 4.690 13 S 2.659 3.341 14 O -0.942 6.942 15 O -0.942 6.942 16 C -0.741 4.741 17 C -0.045 4.045 18 C -0.163 4.163 19 C -0.094 4.094 20 C -0.163 4.163 21 C -0.045 4.045 22 H 0.049 0.951 23 H 0.114 0.886 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.114 0.886 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.159 0.841 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.328 -4.709 13.490 14.671 hybrid contribution 0.918 -1.297 -0.638 1.712 sum 4.246 -6.006 12.852 14.808 Atomic orbital electron populations 1.22290 0.96765 1.00748 1.02479 1.18004 0.93008 0.92329 0.88837 1.22290 0.99794 0.97719 1.02478 1.20973 1.31739 1.12125 0.89282 0.92171 1.24936 0.94877 0.94976 0.98923 1.69816 1.36282 1.22598 1.23396 0.86473 0.78641 0.79613 0.82879 1.19844 1.20938 1.20942 1.30290 1.11401 1.12593 1.14759 1.06335 0.75443 0.76033 0.76296 1.93517 1.28088 1.86554 1.86010 1.93517 1.78007 1.36627 1.86012 1.31134 1.06490 1.13879 1.22606 1.21042 0.92727 0.96837 0.93915 1.21294 1.00595 0.96739 0.97682 1.21428 0.94269 0.95752 0.97969 1.21295 0.96604 1.00709 0.97702 1.21041 0.98333 0.91215 0.93919 0.95149 0.88601 0.94375 0.94374 0.88604 0.95148 0.92776 0.85988 0.85982 0.84073 0.85244 0.85553 0.85242 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 7.78 37.16 0.29 -3.71 16 2 C 0.08 1.91 0.52 -155.66 -0.08 1.83 16 3 C -0.17 -4.00 7.78 37.16 0.29 -3.71 16 4 C -0.50 -13.00 8.01 -34.44 -0.28 -13.27 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.88 -23.85 9.35 55.43 0.52 -23.33 16 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C -0.56 -10.71 4.92 37.16 0.18 -10.53 16 13 S 2.48 46.21 4.19 -107.50 -0.45 45.75 16 14 O -0.94 -19.58 14.74 -57.54 -0.85 -20.43 16 15 O -0.94 -19.58 14.75 -57.54 -0.85 -20.43 16 16 C -0.66 -10.17 5.66 -39.58 -0.22 -10.40 16 17 C -0.03 -0.37 9.47 -39.58 -0.37 -0.74 16 18 C -0.14 -1.62 10.05 -39.58 -0.40 -2.02 16 19 C -0.08 -0.78 10.05 -39.58 -0.40 -1.18 16 20 C -0.14 -1.62 10.05 -39.58 -0.40 -2.02 16 21 C -0.03 -0.37 9.47 -39.58 -0.37 -0.74 16 22 H 0.03 0.70 5.46 -51.93 -0.28 0.41 16 23 H 0.10 2.51 6.07 -51.93 -0.32 2.19 16 24 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.10 2.51 6.07 -51.93 -0.32 2.19 16 27 H 0.03 0.70 5.46 -51.93 -0.28 0.41 16 28 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 30 H 0.12 2.10 8.14 -51.93 -0.42 1.68 16 31 H 0.14 1.82 7.57 -52.48 -0.40 1.42 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.14 1.82 7.57 -52.49 -0.40 1.42 16 LS Contribution 293.79 15.07 4.43 4.43 Total: -1.00 -31.18 293.79 -8.57 -39.76 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -4.49 Total: 3.73 kcal Atomic # 6 Polarization: -43.03 SS G_CDS: -1.85 Total: -44.88 kcal Atomic # 7 Polarization: -23.85 SS G_CDS: 0.52 Total: -23.33 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -1.70 Total: -40.86 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 46.21 SS G_CDS: -0.45 Total: 45.75 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.18 -8.57 -39.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260042151.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.886 kcal (2) G-P(sol) polarization free energy of solvation -31.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds