Wall clock time and date at job start Mon Mar 30 2020 07:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.63158 * 2 1 4 4 C 1.50706 * 109.46523 * 59.61170 * 3 2 1 5 5 C 1.33391 * 125.20317 * 89.72101 * 4 3 2 6 6 C 1.38422 * 114.91710 * 179.85741 * 5 4 3 7 7 C 1.33389 * 114.92496 * 0.42516 * 6 5 4 8 8 S 1.75885 * 125.20077 * 270.01790 * 4 3 2 9 9 O 1.43366 * 109.50913 * 120.32532 * 2 1 3 10 10 C 1.44194 * 107.28942 * 119.13292 * 9 2 1 11 11 C 1.54910 * 103.07746 * 338.56145 * 10 9 2 12 12 H 1.09006 * 111.00947 * 277.44107 * 11 10 9 13 13 C 1.53001 * 110.97943 * 153.67111 * 11 10 9 14 14 C 1.50694 * 109.47168 * 181.21044 * 13 11 10 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 13 11 16 16 C 1.37885 * 119.99902 * 179.97438 * 14 13 11 17 17 N 1.31516 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99854 * 179.72538 * 16 14 13 19 19 H 1.48504 * 109.47032 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46816 * 120.00323 * 18 16 14 21 21 H 1.48495 * 109.46630 * 240.00111 * 18 16 14 22 22 O 1.43752 * 109.62644 * 239.60928 * 2 1 3 23 23 H 1.09001 * 109.47416 * 179.69088 * 1 2 3 24 24 H 1.09002 * 109.46584 * 299.68906 * 1 2 3 25 25 H 1.09006 * 109.47028 * 59.68442 * 1 2 3 26 26 H 1.08991 * 109.47123 * 179.60752 * 3 2 1 27 27 H 1.08999 * 109.47372 * 299.61220 * 3 2 1 28 28 H 1.08002 * 122.53485 * 0.02562 * 5 4 3 29 29 H 1.08000 * 122.53646 * 180.20267 * 6 5 4 30 30 H 1.07992 * 125.20304 * 179.79495 * 7 6 5 31 31 H 1.09002 * 110.69507 * 220.16337 * 10 9 2 32 32 H 1.08993 * 110.69400 * 96.96183 * 10 9 2 33 33 H 1.08998 * 109.46837 * 61.21065 * 13 11 10 34 34 H 1.09002 * 109.46926 * 301.20869 * 13 11 10 35 35 H 0.97001 * 119.99646 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4410 0.0000 4 6 1.5358 2.1556 1.2257 5 6 2.1595 2.1998 2.4040 6 6 1.5014 2.9208 3.3854 7 6 0.3390 3.4545 3.0068 8 16 0.0259 3.0524 1.3234 9 8 2.0088 -0.6823 1.1665 10 6 2.7837 -1.8113 0.7147 11 6 2.2617 -2.0410 -0.7256 12 1 1.3410 -2.6245 -0.7192 13 6 3.3270 -2.7136 -1.5937 14 6 2.7953 -2.8935 -2.9921 15 1 1.7972 -2.5618 -3.2373 16 6 3.5832 -3.4818 -3.9589 17 7 4.7984 -3.8862 -3.6602 18 14 2.9213 -3.7118 -5.6905 19 1 1.5359 -3.1820 -5.7653 20 1 3.7838 -2.9786 -6.6515 21 1 2.9181 -5.1572 -6.0311 22 8 2.0129 -0.6850 -1.1680 23 1 -0.3634 -1.0276 -0.0055 24 1 -0.3632 0.5090 0.8928 25 1 -0.3633 0.5188 -0.8872 26 1 3.1339 1.4380 0.0070 27 1 1.6879 1.9539 -0.8934 28 1 3.1074 1.7125 2.5781 29 1 1.8972 3.0390 4.3833 30 1 -0.3102 4.0437 3.6373 31 1 2.5914 -2.6846 1.3380 32 1 3.8465 -1.5700 0.7053 33 1 3.5776 -3.6870 -1.1721 34 1 4.2200 -2.0891 -1.6220 35 1 5.3528 -4.2997 -4.3404 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260075693.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:55 Heat of formation + Delta-G solvation = -65.732411 kcal Electronic energy + Delta-G solvation = -18419.608589 eV Core-core repulsion = 15509.255653 eV Total energy + Delta-G solvation = -2910.352937 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.13257 -37.79213 -34.61229 -33.88507 -32.77039 -30.46750 -28.93266 -26.65249 -26.36103 -23.39510 -23.24227 -20.80266 -20.55690 -19.05527 -17.16079 -16.76281 -16.14431 -15.91155 -15.46619 -14.75438 -14.45900 -14.21694 -13.53010 -13.42413 -12.79081 -12.70680 -12.52164 -12.35198 -12.19399 -11.86688 -11.76723 -11.66871 -11.39026 -11.20324 -11.13232 -10.71866 -10.59593 -10.47563 -9.74387 -9.51547 -9.19508 -9.08858 -8.52237 -8.41482 -8.39999 -6.04187 -4.05303 1.00610 1.63292 2.00482 2.78799 3.30903 3.38397 3.43715 3.91079 4.39314 4.44775 4.87383 5.02510 5.12491 5.23982 5.32386 5.35556 5.41098 5.59104 5.61358 5.73081 5.74918 5.82563 5.94861 6.10005 6.15660 6.23815 6.30594 6.37669 6.41240 6.54034 6.72732 7.39410 7.54262 7.79237 7.93127 8.32704 8.98979 9.58252 11.07433 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.039109 B = 0.004306 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.782819 B = 6500.655069 C = 6842.589953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.255 3.745 3 C -0.053 4.053 4 C -0.151 4.151 5 C -0.129 4.129 6 C -0.130 4.130 7 C -0.224 4.224 8 S 0.087 5.913 9 O -0.382 6.382 10 C 0.019 3.981 11 C 0.061 3.939 12 H 0.070 0.930 13 C 0.028 3.972 14 C -0.512 4.512 15 H 0.059 0.941 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 O -0.351 6.351 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.160 0.840 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.029 0.971 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.416 12.105 12.557 18.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.177 3.823 3 C -0.093 4.093 4 C -0.268 4.268 5 C -0.159 4.159 6 C -0.161 4.161 7 C -0.359 4.359 8 S 0.350 5.650 9 O -0.303 6.303 10 C -0.058 4.058 11 C 0.004 3.996 12 H 0.088 0.912 13 C -0.009 4.009 14 C -0.550 4.550 15 H 0.077 0.923 16 C -0.144 4.144 17 N -0.537 5.537 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 O -0.272 6.272 23 H 0.083 0.917 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.158 0.842 29 H 0.154 0.846 30 H 0.177 0.823 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.455 12.508 11.481 18.966 hybrid contribution 0.843 -0.605 0.096 1.042 sum -7.611 11.902 11.576 18.265 Atomic orbital electron populations 1.22453 0.94644 1.03263 1.02770 1.23077 0.92526 0.90007 0.76722 1.20409 1.02122 0.92933 0.93840 1.24209 0.98289 1.04678 0.99652 1.20126 1.02404 1.01422 0.91910 1.20168 0.95351 0.99806 1.00763 1.25550 1.02330 1.09109 0.98935 1.84246 1.21821 1.50115 1.08848 1.88823 1.69731 1.42146 1.29591 1.24371 0.96386 0.88671 0.96334 1.24250 1.00246 0.83160 0.91957 0.91162 1.19187 0.92392 0.95186 0.94163 1.21129 1.00772 1.38650 0.94442 0.92255 1.24996 0.94870 0.95559 0.99024 1.69960 1.08473 1.41258 1.33987 0.86490 0.79159 0.77663 0.84458 1.19674 1.20987 1.21035 1.89383 1.85393 1.22887 1.29534 0.91702 0.91036 0.91031 0.88832 0.89182 0.84221 0.84560 0.82255 0.89107 0.90875 0.94624 0.95302 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 8.74 37.16 0.32 -2.33 16 2 C 0.26 4.38 1.14 -26.73 -0.03 4.35 16 3 C -0.05 -0.80 5.38 -27.88 -0.15 -0.95 16 4 C -0.15 -2.03 4.63 -36.00 -0.17 -2.20 16 5 C -0.13 -1.65 9.86 -41.21 -0.41 -2.05 16 6 C -0.13 -1.43 10.18 -41.21 -0.42 -1.85 16 7 C -0.22 -2.33 11.23 29.04 0.33 -2.01 16 8 S 0.09 1.01 21.82 -107.50 -2.35 -1.34 16 9 O -0.38 -6.64 10.35 -59.04 -0.61 -7.26 16 10 C 0.02 0.33 7.54 38.17 0.29 0.62 16 11 C 0.06 1.27 3.42 -25.72 -0.09 1.18 16 12 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 13 C 0.03 0.70 4.77 -27.89 -0.13 0.56 16 14 C -0.51 -14.40 8.96 -34.44 -0.31 -14.71 16 15 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 18 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 O -0.35 -7.43 10.57 -59.04 -0.62 -8.05 16 23 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.07 1.01 6.10 -51.93 -0.32 0.69 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 33 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 307.70 15.07 4.64 4.64 Total: -1.00 -30.42 307.70 -9.02 -39.44 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -4.93 Total: -0.43 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -0.86 Total: -17.88 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.74 Total: -25.81 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -1.23 Total: -15.31 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.35 Total: -1.34 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.42 -9.02 -39.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260075693.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.295 kcal (2) G-P(sol) polarization free energy of solvation -30.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds