Wall clock time and date at job start Mon Mar 30 2020 07:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.63158 * 2 1 4 4 C 1.50706 * 109.46523 * 59.61170 * 3 2 1 5 5 C 1.33391 * 125.20317 * 89.72101 * 4 3 2 6 6 C 1.38422 * 114.91710 * 179.85741 * 5 4 3 7 7 C 1.33389 * 114.92496 * 0.42516 * 6 5 4 8 8 S 1.75885 * 125.20077 * 270.01790 * 4 3 2 9 9 O 1.43366 * 109.50913 * 120.32532 * 2 1 3 10 10 C 1.44194 * 107.28942 * 119.13292 * 9 2 1 11 11 C 1.54910 * 103.07746 * 338.56145 * 10 9 2 12 12 H 1.09006 * 111.00947 * 277.44107 * 11 10 9 13 13 C 1.53001 * 110.97943 * 153.67111 * 11 10 9 14 14 C 1.50694 * 109.47168 * 181.21044 * 13 11 10 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 13 11 16 16 C 1.37885 * 119.99902 * 179.97438 * 14 13 11 17 17 N 1.31516 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99854 * 179.72538 * 16 14 13 19 19 H 1.48504 * 109.47032 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46816 * 120.00323 * 18 16 14 21 21 H 1.48495 * 109.46630 * 240.00111 * 18 16 14 22 22 O 1.43752 * 109.62644 * 239.60928 * 2 1 3 23 23 H 1.09001 * 109.47416 * 179.69088 * 1 2 3 24 24 H 1.09002 * 109.46584 * 299.68906 * 1 2 3 25 25 H 1.09006 * 109.47028 * 59.68442 * 1 2 3 26 26 H 1.08991 * 109.47123 * 179.60752 * 3 2 1 27 27 H 1.08999 * 109.47372 * 299.61220 * 3 2 1 28 28 H 1.08002 * 122.53485 * 0.02562 * 5 4 3 29 29 H 1.08000 * 122.53646 * 180.20267 * 6 5 4 30 30 H 1.07992 * 125.20304 * 179.79495 * 7 6 5 31 31 H 1.09002 * 110.69507 * 220.16337 * 10 9 2 32 32 H 1.08993 * 110.69400 * 96.96183 * 10 9 2 33 33 H 1.08998 * 109.46837 * 61.21065 * 13 11 10 34 34 H 1.09002 * 109.46926 * 301.20869 * 13 11 10 35 35 H 0.97001 * 119.99646 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4410 0.0000 4 6 1.5358 2.1556 1.2257 5 6 2.1595 2.1998 2.4040 6 6 1.5014 2.9208 3.3854 7 6 0.3390 3.4545 3.0068 8 16 0.0259 3.0524 1.3234 9 8 2.0088 -0.6823 1.1665 10 6 2.7837 -1.8113 0.7147 11 6 2.2617 -2.0410 -0.7256 12 1 1.3410 -2.6245 -0.7192 13 6 3.3270 -2.7136 -1.5937 14 6 2.7953 -2.8935 -2.9921 15 1 1.7972 -2.5618 -3.2373 16 6 3.5832 -3.4818 -3.9589 17 7 4.7984 -3.8862 -3.6602 18 14 2.9213 -3.7118 -5.6905 19 1 1.5359 -3.1820 -5.7653 20 1 3.7838 -2.9786 -6.6515 21 1 2.9181 -5.1572 -6.0311 22 8 2.0129 -0.6850 -1.1680 23 1 -0.3634 -1.0276 -0.0055 24 1 -0.3632 0.5090 0.8928 25 1 -0.3633 0.5188 -0.8872 26 1 3.1339 1.4380 0.0070 27 1 1.6879 1.9539 -0.8934 28 1 3.1074 1.7125 2.5781 29 1 1.8972 3.0390 4.3833 30 1 -0.3102 4.0437 3.6373 31 1 2.5914 -2.6846 1.3380 32 1 3.8465 -1.5700 0.7053 33 1 3.5776 -3.6870 -1.1721 34 1 4.2200 -2.0891 -1.6220 35 1 5.3528 -4.2997 -4.3404 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260075693.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:52 Heat of formation + Delta-G solvation = -82.961658 kcal Electronic energy + Delta-G solvation = -18420.355706 eV Core-core repulsion = 15509.255653 eV Total energy + Delta-G solvation = -2911.100053 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.58145 -38.74011 -36.21703 -35.43234 -34.50209 -32.10175 -30.23537 -28.31533 -27.53331 -25.13431 -24.36758 -22.40850 -21.96111 -19.98646 -18.73797 -18.16350 -17.82282 -17.35504 -16.62162 -16.32457 -15.90902 -15.69677 -14.92622 -14.78188 -14.16027 -13.97974 -13.87530 -13.66106 -13.49247 -13.24827 -13.14779 -13.09193 -13.01314 -12.81990 -12.54777 -12.40458 -12.22066 -11.68879 -11.62115 -11.18584 -10.94170 -10.67734 -10.59260 -9.49900 -9.29686 -8.22094 -6.30907 0.09604 0.72714 1.12481 1.39264 1.40316 1.53429 1.88378 2.40423 2.49388 3.01328 3.14647 3.70006 3.74961 3.89409 4.04589 4.08035 4.28589 4.29962 4.37072 4.53452 4.64752 4.70496 4.71737 4.77138 4.80381 4.93996 5.05058 5.14171 5.27660 5.33807 5.44776 5.54581 5.62707 5.74562 6.15929 6.27689 6.80628 7.36896 8.89919 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.039109 B = 0.004306 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.782819 B = 6500.655069 C = 6842.589953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.248 3.752 3 C -0.049 4.049 4 C -0.178 4.178 5 C -0.131 4.131 6 C -0.142 4.142 7 C -0.211 4.211 8 S 0.092 5.908 9 O -0.380 6.380 10 C 0.028 3.972 11 C 0.064 3.936 12 H 0.074 0.926 13 C 0.033 3.967 14 C -0.531 4.531 15 H 0.054 0.946 16 C 0.004 3.996 17 N -0.931 5.931 18 Si 0.962 3.038 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.274 1.274 22 O -0.380 6.380 23 H 0.059 0.941 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.137 0.863 29 H 0.161 0.839 30 H 0.190 0.810 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.025 0.975 34 H 0.001 0.999 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.853 13.030 13.400 20.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.170 3.830 3 C -0.089 4.089 4 C -0.295 4.295 5 C -0.162 4.162 6 C -0.172 4.172 7 C -0.346 4.346 8 S 0.355 5.645 9 O -0.302 6.302 10 C -0.048 4.048 11 C 0.007 3.993 12 H 0.092 0.908 13 C -0.004 4.004 14 C -0.569 4.569 15 H 0.072 0.928 16 C -0.194 4.194 17 N -0.571 5.571 18 Si 0.787 3.213 19 H -0.191 1.191 20 H -0.205 1.205 21 H -0.200 1.200 22 O -0.301 6.301 23 H 0.078 0.922 24 H 0.103 0.897 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.154 0.846 29 H 0.178 0.822 30 H 0.207 0.793 31 H 0.136 0.864 32 H 0.089 0.911 33 H 0.043 0.957 34 H 0.020 0.980 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.901 13.441 12.335 20.756 hybrid contribution 1.292 -0.831 -0.106 1.540 sum -8.608 12.609 12.228 19.561 Atomic orbital electron populations 1.22420 0.93118 1.03277 1.03773 1.23404 0.93664 0.90556 0.75335 1.20293 1.01570 0.91898 0.95128 1.24079 0.99914 1.06268 0.99242 1.20331 1.02364 1.01232 0.92228 1.20386 0.95567 0.99731 1.01497 1.25961 1.02263 1.08169 0.98241 1.84204 1.20525 1.49684 1.10093 1.88815 1.69774 1.42002 1.29569 1.24302 0.96220 0.89719 0.94595 1.23993 0.99047 0.83244 0.93006 0.90842 1.18997 0.92675 0.94594 0.94116 1.21466 1.00711 1.38703 0.96065 0.92782 1.25866 0.95088 0.95156 1.03293 1.70067 1.09637 1.41908 1.35484 0.85436 0.78638 0.78000 0.79218 1.19080 1.20486 1.19987 1.89337 1.85950 1.22981 1.31841 0.92155 0.89670 0.90359 0.89866 0.88916 0.84565 0.82191 0.79300 0.86443 0.91081 0.95666 0.98030 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.97 8.74 71.98 0.63 -4.34 16 2 C 0.25 8.43 1.14 30.59 0.03 8.46 16 3 C -0.05 -1.48 5.38 29.85 0.16 -1.31 16 4 C -0.18 -4.60 4.63 24.59 0.11 -4.49 16 5 C -0.13 -3.17 9.86 21.22 0.21 -2.96 16 6 C -0.14 -2.73 10.18 21.22 0.22 -2.52 16 7 C -0.21 -3.73 11.23 66.72 0.75 -2.98 16 8 S 0.09 1.95 21.82 -56.49 -1.23 0.72 16 9 O -0.38 -12.93 10.35 -126.22 -1.31 -14.24 16 10 C 0.03 0.96 7.54 72.63 0.55 1.51 16 11 C 0.06 2.70 3.42 31.25 0.11 2.81 16 12 H 0.07 3.03 8.14 -2.38 -0.02 3.01 16 13 C 0.03 1.73 4.77 29.85 0.14 1.87 16 14 C -0.53 -30.45 8.96 25.60 0.23 -30.22 16 15 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 16 C 0.00 0.22 5.46 84.66 0.46 0.68 16 17 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16 18 Si 0.96 44.69 29.54 68.60 2.03 46.71 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 O -0.38 -16.28 10.57 -126.22 -1.33 -17.62 16 23 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.08 2.26 6.10 -2.39 -0.01 2.25 16 25 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 26 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 29 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.19 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 32 H 0.07 2.48 8.03 -2.39 -0.02 2.46 16 33 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -65.01 307.70 3.11 -61.90 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 1.07 Total: 11.60 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 3.60 Total: -33.48 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.28 Total: -55.60 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -2.64 Total: -31.86 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.23 Total: 0.72 kcal Total: -65.01 3.11 -61.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260075693.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.060 kcal (2) G-P(sol) polarization free energy of solvation -65.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds