Wall clock time and date at job start Mon Mar 30 2020 07:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.62738 * 2 1 4 4 C 1.50704 * 109.47038 * 58.94703 * 3 2 1 5 5 C 1.33382 * 125.20708 * 89.71241 * 4 3 2 6 6 C 1.38429 * 114.92203 * 179.86549 * 5 4 3 7 7 C 1.33388 * 114.91629 * 0.42572 * 6 5 4 8 8 S 1.75878 * 109.59675 * 359.77552 * 7 6 5 9 9 O 1.43753 * 109.63366 * 120.39716 * 2 1 3 10 10 C 1.44791 * 104.81174 * 95.41587 * 9 2 1 11 11 C 1.54907 * 101.72224 * 36.10537 * 10 9 2 12 12 H 1.09000 * 110.69780 * 83.01060 * 11 10 9 13 13 C 1.52998 * 110.69337 * 206.04077 * 11 10 9 14 14 C 1.50706 * 109.47348 * 184.99906 * 13 11 10 15 15 H 1.08005 * 119.99758 * 359.97438 * 14 13 11 16 16 C 1.37871 * 120.00102 * 179.97438 * 14 13 11 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 O 1.43373 * 109.50698 * 239.68596 * 2 1 3 23 23 H 1.09003 * 109.46771 * 300.30080 * 1 2 3 24 24 H 1.08998 * 109.47410 * 60.30053 * 1 2 3 25 25 H 1.09001 * 109.47038 * 180.30719 * 1 2 3 26 26 H 1.08999 * 109.47369 * 178.93705 * 3 2 1 27 27 H 1.09001 * 109.47762 * 298.94384 * 3 2 1 28 28 H 1.08005 * 122.54004 * 0.02562 * 5 4 3 29 29 H 1.08000 * 122.53982 * 180.20852 * 6 5 4 30 30 H 1.08003 * 125.19721 * 179.75383 * 7 6 5 31 31 H 1.09000 * 110.97857 * 277.99134 * 10 9 2 32 32 H 1.09002 * 110.97026 * 154.21535 * 10 9 2 33 33 H 1.09001 * 109.47671 * 65.00115 * 13 11 10 34 34 H 1.09006 * 109.47297 * 304.99834 * 13 11 10 35 35 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 6 1.5224 2.1604 1.2172 5 6 2.1330 2.2093 2.4021 6 6 1.4641 2.9340 3.3735 7 6 0.3060 3.4661 2.9800 8 16 0.0114 3.0575 1.2949 9 8 2.0131 -0.6851 1.1678 10 6 2.2619 -2.0410 0.7251 11 6 2.7838 -1.8111 -0.7151 12 1 3.8474 -1.5727 -0.7060 13 6 2.5139 -3.0368 -1.5901 14 6 3.1391 -2.8336 -2.9462 15 1 3.6751 -1.9212 -3.1624 16 6 3.0270 -3.8123 -3.9107 17 7 2.3740 -4.9232 -3.6476 18 14 3.8015 -3.5600 -5.5918 19 1 3.5407 -4.7503 -6.4406 20 1 3.2133 -2.3562 -6.2322 21 1 5.2668 -3.3734 -5.4387 22 8 2.0088 -0.6821 -1.1667 23 1 -0.3633 0.5185 0.8873 24 1 -0.3634 0.5091 -0.8926 25 1 -0.3633 -1.0277 0.0055 26 1 3.1338 1.4382 0.0191 27 1 1.6976 1.9505 -0.8993 28 1 3.0789 1.7226 2.5887 29 1 1.8491 3.0562 4.3752 30 1 -0.3505 4.0573 3.6013 31 1 1.3411 -2.6244 0.7181 32 1 3.0209 -2.5202 1.3435 33 1 1.4383 -3.1731 -1.7028 34 1 2.9449 -3.9208 -1.1201 35 1 1.9715 -5.0540 -2.7748 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260075705.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:08 Heat of formation + Delta-G solvation = -87.446929 kcal Electronic energy + Delta-G solvation = -18449.115635 eV Core-core repulsion = 15537.821087 eV Total energy + Delta-G solvation = -2911.294549 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.68611 -38.77891 -36.44449 -35.62190 -34.61103 -31.98852 -30.23829 -28.12873 -27.50193 -25.09988 -24.37548 -22.69317 -22.09941 -20.02714 -19.07861 -18.62384 -17.54348 -17.49757 -16.49926 -16.25840 -15.75816 -15.58116 -15.26870 -14.78803 -14.30251 -14.16308 -14.05590 -13.62228 -13.59725 -13.39464 -13.25152 -13.12956 -12.93610 -12.74176 -12.48818 -12.43271 -12.01913 -11.84416 -11.65009 -11.14737 -10.73815 -10.69991 -10.57358 -9.52509 -9.33111 -8.69706 -6.39187 0.06667 0.69902 1.09949 1.52312 1.60517 1.80288 1.85595 2.39496 2.55851 2.93356 3.16511 3.60151 3.67284 3.79437 3.93586 4.03121 4.17125 4.25905 4.30588 4.44164 4.53433 4.60893 4.65551 4.66818 4.75393 4.87144 4.93556 5.04387 5.06905 5.24558 5.32074 5.41902 5.60011 5.93074 6.15074 6.18894 6.55849 7.39322 8.71752 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.039903 B = 0.004247 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.531993 B = 6590.865425 C = 6807.307217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.249 3.751 3 C -0.047 4.047 4 C -0.181 4.181 5 C -0.130 4.130 6 C -0.142 4.142 7 C -0.211 4.211 8 S 0.088 5.912 9 O -0.371 6.371 10 C 0.024 3.976 11 C 0.072 3.928 12 H 0.073 0.927 13 C 0.013 3.987 14 C -0.609 4.609 15 H 0.046 0.954 16 C -0.036 4.036 17 N -0.937 5.937 18 Si 1.116 2.884 19 H -0.281 1.281 20 H -0.274 1.274 21 H -0.267 1.267 22 O -0.386 6.386 23 H 0.088 0.912 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.139 0.861 29 H 0.161 0.839 30 H 0.190 0.810 31 H 0.071 0.929 32 H 0.129 0.871 33 H -0.005 1.005 34 H 0.019 0.981 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.002 16.118 13.903 21.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.172 3.828 3 C -0.086 4.086 4 C -0.298 4.298 5 C -0.160 4.160 6 C -0.172 4.172 7 C -0.346 4.346 8 S 0.351 5.649 9 O -0.292 6.292 10 C -0.052 4.052 11 C 0.015 3.985 12 H 0.091 0.909 13 C -0.024 4.024 14 C -0.647 4.647 15 H 0.064 0.936 16 C -0.233 4.233 17 N -0.574 5.574 18 Si 0.937 3.063 19 H -0.207 1.207 20 H -0.200 1.200 21 H -0.192 1.192 22 O -0.308 6.308 23 H 0.107 0.893 24 H 0.094 0.906 25 H 0.072 0.928 26 H 0.107 0.893 27 H 0.113 0.887 28 H 0.157 0.843 29 H 0.179 0.821 30 H 0.207 0.793 31 H 0.089 0.911 32 H 0.147 0.853 33 H 0.014 0.986 34 H 0.037 0.963 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.964 15.910 11.436 19.990 hybrid contribution 0.758 -0.109 2.406 2.525 sum -3.206 15.801 13.842 21.250 Atomic orbital electron populations 1.22434 0.93554 1.02919 1.03827 1.23421 0.93486 0.90768 0.75173 1.20328 1.01723 0.91258 0.95317 1.24116 0.99953 1.06395 0.99345 1.20345 1.02412 1.01148 0.92130 1.20402 0.95475 0.99684 1.01610 1.25969 1.02414 1.08146 0.98075 1.84269 1.20749 1.49568 1.10272 1.89176 1.86064 1.21947 1.31993 1.24504 1.01857 0.84559 0.94260 1.23673 0.95175 0.86608 0.93040 0.90893 1.19252 0.95585 0.92325 0.95226 1.22306 1.37526 1.05217 0.99641 0.93608 1.27354 0.95851 0.92309 1.07827 1.70932 1.34671 1.27206 1.24608 0.82947 0.76286 0.76189 0.70861 1.20660 1.19980 1.19188 1.88982 1.70052 1.42166 1.29622 0.89288 0.90607 0.92805 0.89335 0.88714 0.84301 0.82110 0.79330 0.91073 0.85273 0.98637 0.96259 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.25 8.74 71.98 0.63 -4.62 16 2 C 0.25 8.47 1.14 30.59 0.03 8.51 16 3 C -0.05 -1.35 5.38 29.85 0.16 -1.19 16 4 C -0.18 -4.56 4.62 24.59 0.11 -4.45 16 5 C -0.13 -3.02 9.88 21.22 0.21 -2.81 16 6 C -0.14 -2.65 10.18 21.22 0.22 -2.43 16 7 C -0.21 -3.67 11.23 66.72 0.75 -2.92 16 8 S 0.09 1.87 21.80 -56.49 -1.23 0.64 16 9 O -0.37 -12.44 10.53 -126.22 -1.33 -13.77 16 10 C 0.02 0.83 7.36 72.63 0.53 1.37 16 11 C 0.07 3.07 3.58 31.25 0.11 3.18 16 12 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 13 C 0.01 0.68 4.04 29.85 0.12 0.80 16 14 C -0.61 -35.41 9.04 25.60 0.23 -35.18 16 15 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 16 C -0.04 -2.11 5.46 84.65 0.46 -1.65 16 17 N -0.94 -58.13 13.65 21.45 0.29 -57.84 16 18 Si 1.12 51.09 29.90 68.60 2.05 53.14 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 O -0.39 -16.68 10.49 -126.22 -1.32 -18.01 16 23 H 0.09 2.44 6.04 -2.39 -0.01 2.42 16 24 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 25 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 26 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 29 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 30 H 0.19 2.12 8.06 -2.91 -0.02 2.10 16 31 H 0.07 2.42 8.04 -2.39 -0.02 2.40 16 32 H 0.13 3.65 8.14 -2.39 -0.02 3.63 16 33 H 0.00 -0.26 8.01 -2.39 -0.02 -0.28 16 34 H 0.02 1.01 8.01 -2.38 -0.02 0.99 16 35 H 0.26 15.93 7.22 -92.71 -0.67 15.26 16 Total: -1.00 -67.57 306.44 3.20 -64.37 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 1.17 Total: 12.85 kcal Atomic # 6 Polarization: -44.96 SS G_CDS: 3.57 Total: -41.39 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 0.29 Total: -57.84 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -2.65 Total: -31.77 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 2.05 Total: 53.14 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -1.23 Total: 0.64 kcal Total: -67.57 3.20 -64.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260075705.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.075 kcal (2) G-P(sol) polarization free energy of solvation -67.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds