Wall clock time and date at job start Mon Mar 30 2020 06:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35978 * 116.99591 * 2 1 4 4 C 1.38719 * 120.00026 * 359.97438 * 3 2 1 5 5 C 1.38197 * 119.98683 * 180.02562 * 4 3 2 6 6 Cl 1.73600 * 120.00691 * 179.97438 * 5 4 3 7 7 C 1.38826 * 119.98395 * 0.24849 * 5 4 3 8 8 O 1.36002 * 120.00580 * 179.75208 * 7 5 4 9 9 C 1.38629 * 119.98634 * 359.54046 * 7 5 4 10 10 C 1.50700 * 119.99179 * 180.20892 * 9 7 5 11 11 C 1.50694 * 115.55156 * 280.10776 * 10 9 7 12 12 H 1.08003 * 119.99974 * 145.58078 * 11 10 9 13 13 C 1.37878 * 120.00006 * 325.58579 * 11 10 9 14 14 N 1.31510 * 119.99904 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99978 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47179 * 59.99853 * 15 13 11 17 17 H 1.48500 * 109.47095 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47081 * 299.99344 * 15 13 11 19 19 C 1.53001 * 117.49809 * 134.40110 * 10 9 7 20 20 C 1.52999 * 117.50021 * 65.77794 * 10 9 7 21 21 C 1.38187 * 120.01479 * 0.43699 * 9 7 5 22 22 H 1.08996 * 109.46642 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47708 * 300.00264 * 1 2 3 24 24 H 1.09007 * 109.46713 * 60.00674 * 1 2 3 25 25 H 1.08004 * 120.00498 * 0.02562 * 4 3 2 26 26 H 0.96703 * 114.00097 * 84.97150 * 8 7 5 27 27 H 0.97000 * 120.00359 * 180.02562 * 14 13 11 28 28 H 1.08995 * 117.49983 * 359.97438 * 19 10 9 29 29 H 1.09000 * 117.50049 * 145.02668 * 19 10 9 30 30 H 1.08995 * 117.50146 * 214.97881 * 20 10 9 31 31 H 1.09003 * 117.49946 * 0.02562 * 20 10 9 32 32 H 1.08000 * 119.98964 * 179.76830 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2907 2.3750 -0.0005 5 6 1.9183 3.6062 -0.0011 6 17 0.9732 5.0624 -0.0024 7 6 3.3047 3.6783 -0.0063 8 8 3.9228 4.8897 -0.0119 9 6 4.0589 2.5151 -0.0013 10 6 5.5639 2.5932 -0.0022 11 6 6.2002 2.8591 -1.3421 12 1 7.0996 3.4539 -1.4043 13 6 5.6341 2.3433 -2.4886 14 7 4.5392 1.6188 -2.4128 15 14 6.4232 2.6724 -4.1495 16 1 7.8057 2.1303 -4.1568 17 1 5.6274 2.0119 -5.2152 18 1 6.4640 4.1361 -4.3969 19 6 6.3190 1.6859 0.9712 20 6 6.2410 3.1914 1.2325 21 6 3.4311 1.2841 -0.0003 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.2121 2.3185 -0.0005 26 1 4.0357 5.2777 0.8666 27 1 4.1411 1.2556 -3.2193 28 1 5.7272 1.0328 1.6126 29 1 7.2762 1.2811 0.6426 30 1 7.1469 3.7770 1.0757 31 1 5.5980 3.5281 2.0457 32 1 4.0191 0.3782 -0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260535561.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:15 Heat of formation + Delta-G solvation = -31.543805 kcal Electronic energy + Delta-G solvation = -18716.353115 eV Core-core repulsion = 15669.605906 eV Total energy + Delta-G solvation = -3046.747208 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -39.69041 -38.05792 -36.36194 -35.69162 -34.68040 -32.14157 -29.84222 -28.46109 -26.57563 -25.63864 -22.50876 -21.84001 -20.97079 -19.42623 -17.61189 -17.39737 -16.15967 -15.79615 -15.29057 -14.70395 -14.47625 -14.21798 -13.91784 -13.38254 -13.11857 -12.60012 -12.11009 -11.97919 -11.63003 -11.38159 -11.03759 -10.97982 -10.95175 -10.54984 -10.47318 -10.37135 -10.07002 -9.91765 -9.36455 -9.19178 -8.90716 -8.29539 -7.85830 -7.22779 -5.94057 -4.09812 2.00413 2.14510 2.70205 3.31362 3.36450 3.39120 3.78830 4.38612 4.46365 4.92190 5.02552 5.31297 5.40939 5.45794 5.51624 5.66367 5.77862 6.01553 6.13696 6.26477 6.32626 6.57354 6.61910 6.68099 6.87935 6.97116 7.03573 7.20914 7.43423 7.58932 7.83090 7.96629 8.28791 8.51732 8.85054 9.49561 10.97564 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.015525 B = 0.008561 C = 0.007791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.116496 B = 3269.820631 C = 3592.872644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.316 6.316 3 C 0.111 3.889 4 C -0.211 4.211 5 C -0.038 4.038 6 Cl -0.088 7.088 7 C 0.083 3.917 8 O -0.469 6.469 9 C 0.061 3.939 10 C 0.090 3.910 11 C -0.481 4.481 12 H 0.064 0.936 13 C 0.072 3.928 14 N -0.871 5.871 15 Si 0.896 3.104 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.207 4.207 20 C -0.199 4.199 21 C -0.059 4.059 22 H 0.092 0.908 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.124 0.876 26 H 0.367 0.633 27 H 0.263 0.737 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.022 0.077 6.491 9.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.230 6.230 3 C 0.066 3.934 4 C -0.231 4.231 5 C -0.065 4.065 6 Cl -0.059 7.059 7 C 0.037 3.963 8 O -0.275 6.275 9 C 0.060 3.940 10 C 0.089 3.911 11 C -0.518 4.518 12 H 0.082 0.918 13 C -0.132 4.132 14 N -0.507 5.507 15 Si 0.724 3.276 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.245 4.245 20 C -0.236 4.236 21 C -0.078 4.078 22 H 0.110 0.890 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.142 0.858 26 H 0.220 0.780 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.150 -0.180 5.726 9.162 hybrid contribution -0.127 0.485 -0.619 0.796 sum -7.277 0.305 5.107 8.895 Atomic orbital electron populations 1.22919 0.79726 1.02985 1.00888 1.86085 1.20252 1.27130 1.89579 1.18715 0.92196 0.83002 0.99463 1.20553 0.99277 0.90533 1.12735 1.20896 0.90789 0.86617 1.08233 1.98294 1.72685 1.37705 1.97214 1.17807 0.87067 0.85938 1.05486 1.85009 1.79827 1.31035 1.31676 1.19137 0.95157 0.89729 0.89985 1.17570 0.85753 0.97462 0.90294 1.20345 1.10329 1.32764 0.88365 0.91759 1.24993 0.94618 0.94396 0.99170 1.69971 1.18819 1.33243 1.28646 0.86584 0.79187 0.78649 0.83205 1.20205 1.21257 1.20097 1.23144 1.03254 0.91789 1.06265 1.22869 1.03064 0.96185 1.01525 1.19949 0.89612 0.98529 0.99754 0.88970 0.93277 0.93102 0.85823 0.77988 0.92666 0.91335 0.89937 0.90071 0.91502 0.85385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.32 -5.75 10.50 -19.67 -0.21 -5.96 16 3 C 0.11 2.24 6.68 -39.24 -0.26 1.98 16 4 C -0.21 -4.00 8.82 -39.42 -0.35 -4.35 16 5 C -0.04 -0.76 6.33 -39.38 -0.25 -1.01 16 6 Cl -0.09 -1.52 28.50 -51.86 -1.48 -2.99 16 7 C 0.08 1.82 6.65 -39.22 -0.26 1.56 16 8 O -0.47 -9.78 12.17 -19.75 -0.24 -10.02 16 9 C 0.06 1.42 3.51 -104.50 -0.37 1.05 16 10 C 0.09 2.13 1.52 -156.81 -0.24 1.89 16 11 C -0.48 -12.85 9.06 -34.44 -0.31 -13.16 16 12 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 13 C 0.07 1.95 5.37 -17.82 -0.10 1.85 16 14 N -0.87 -23.82 10.02 55.43 0.56 -23.26 16 15 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C -0.21 -4.39 9.55 -26.73 -0.26 -4.65 16 20 C -0.20 -4.05 9.67 -26.73 -0.26 -4.31 16 21 C -0.06 -1.33 7.38 -39.44 -0.29 -1.62 16 22 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 24 H 0.05 0.64 7.66 -51.93 -0.40 0.24 16 25 H 0.12 2.00 6.29 -52.48 -0.33 1.67 16 26 H 0.37 5.88 9.06 45.56 0.41 6.29 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.07 1.36 8.00 -51.93 -0.42 0.94 16 29 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 30 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.13 2.97 7.92 -52.49 -0.42 2.55 16 LS Contribution 291.67 15.07 4.40 4.40 Total: -1.00 -29.16 291.67 -6.72 -35.88 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -2.78 Total: 5.09 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -1.95 Total: -19.38 kcal Atomic # 7 Polarization: -23.82 SS G_CDS: 0.56 Total: -23.26 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.45 Total: -15.98 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -1.48 Total: -2.99 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.16 -6.72 -35.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260535561.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.337 kcal (2) G-P(sol) polarization free energy of solvation -29.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds