Wall clock time and date at job start Mon Mar 30 2020 06:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35978 * 116.99591 * 2 1 4 4 C 1.38719 * 120.00026 * 359.97438 * 3 2 1 5 5 C 1.38197 * 119.98683 * 180.02562 * 4 3 2 6 6 Cl 1.73600 * 120.00691 * 179.97438 * 5 4 3 7 7 C 1.38826 * 119.98395 * 0.24849 * 5 4 3 8 8 O 1.36002 * 120.00580 * 179.75208 * 7 5 4 9 9 C 1.38629 * 119.98634 * 359.54046 * 7 5 4 10 10 C 1.50700 * 119.99179 * 180.20892 * 9 7 5 11 11 C 1.50694 * 115.55156 * 280.10776 * 10 9 7 12 12 H 1.08003 * 119.99974 * 145.58078 * 11 10 9 13 13 C 1.37878 * 120.00006 * 325.58579 * 11 10 9 14 14 N 1.31510 * 119.99904 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99978 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47179 * 59.99853 * 15 13 11 17 17 H 1.48500 * 109.47095 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47081 * 299.99344 * 15 13 11 19 19 C 1.53001 * 117.49809 * 134.40110 * 10 9 7 20 20 C 1.52999 * 117.50021 * 65.77794 * 10 9 7 21 21 C 1.38187 * 120.01479 * 0.43699 * 9 7 5 22 22 H 1.08996 * 109.46642 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47708 * 300.00264 * 1 2 3 24 24 H 1.09007 * 109.46713 * 60.00674 * 1 2 3 25 25 H 1.08004 * 120.00498 * 0.02562 * 4 3 2 26 26 H 0.96703 * 114.00097 * 84.97150 * 8 7 5 27 27 H 0.97000 * 120.00359 * 180.02562 * 14 13 11 28 28 H 1.08995 * 117.49983 * 359.97438 * 19 10 9 29 29 H 1.09000 * 117.50049 * 145.02668 * 19 10 9 30 30 H 1.08995 * 117.50146 * 214.97881 * 20 10 9 31 31 H 1.09003 * 117.49946 * 0.02562 * 20 10 9 32 32 H 1.08000 * 119.98964 * 179.76830 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2907 2.3750 -0.0005 5 6 1.9183 3.6062 -0.0011 6 17 0.9732 5.0624 -0.0024 7 6 3.3047 3.6783 -0.0063 8 8 3.9228 4.8897 -0.0119 9 6 4.0589 2.5151 -0.0013 10 6 5.5639 2.5932 -0.0022 11 6 6.2002 2.8591 -1.3421 12 1 7.0996 3.4539 -1.4043 13 6 5.6341 2.3433 -2.4886 14 7 4.5392 1.6188 -2.4128 15 14 6.4232 2.6724 -4.1495 16 1 7.8057 2.1303 -4.1568 17 1 5.6274 2.0119 -5.2152 18 1 6.4640 4.1361 -4.3969 19 6 6.3190 1.6859 0.9712 20 6 6.2410 3.1914 1.2325 21 6 3.4311 1.2841 -0.0003 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.2121 2.3185 -0.0005 26 1 4.0357 5.2777 0.8666 27 1 4.1411 1.2556 -3.2193 28 1 5.7272 1.0328 1.6126 29 1 7.2762 1.2811 0.6426 30 1 7.1469 3.7770 1.0757 31 1 5.5980 3.5281 2.0457 32 1 4.0191 0.3782 -0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260535561.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:15 Heat of formation + Delta-G solvation = -49.370017 kcal Electronic energy + Delta-G solvation = -18717.126117 eV Core-core repulsion = 15669.605906 eV Total energy + Delta-G solvation = -3047.520211 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.20638 -39.53059 -37.96072 -37.22331 -36.20257 -34.11690 -31.38522 -29.92695 -27.80066 -27.60303 -24.12803 -23.41571 -22.59541 -21.12764 -19.27074 -18.93666 -17.79963 -17.31454 -16.68107 -16.49024 -16.07262 -15.76901 -15.54411 -14.90456 -14.75354 -14.07832 -13.70212 -13.47572 -13.16606 -12.92523 -12.86804 -12.61022 -12.41753 -12.33512 -12.07962 -11.88020 -11.76346 -11.41559 -11.06528 -10.98753 -10.66409 -10.14761 -9.50558 -8.75744 -7.89981 -6.13062 0.42746 0.58319 1.20245 1.41618 1.43584 1.49323 2.43537 2.49879 2.87766 3.07565 3.48574 3.69268 3.94641 4.17143 4.38570 4.44866 4.49627 4.52085 4.61370 4.72771 4.75731 4.95822 5.00848 5.08587 5.21902 5.37647 5.45816 5.56108 5.70293 5.84060 5.97802 6.37370 6.56485 6.82270 7.09203 7.46523 8.95117 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.015525 B = 0.008561 C = 0.007791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.116496 B = 3269.820631 C = 3592.872644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.114 3.886 4 C -0.205 4.205 5 C -0.042 4.042 6 Cl -0.064 7.064 7 C 0.067 3.933 8 O -0.483 6.483 9 C 0.045 3.955 10 C 0.056 3.944 11 C -0.498 4.498 12 H 0.053 0.947 13 C 0.030 3.970 14 N -0.885 5.885 15 Si 0.945 3.055 16 H -0.271 1.271 17 H -0.287 1.287 18 H -0.279 1.279 19 C -0.202 4.202 20 C -0.176 4.176 21 C -0.079 4.079 22 H 0.121 0.879 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.154 0.846 26 H 0.386 0.614 27 H 0.256 0.744 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.380 0.427 7.046 10.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.069 3.931 4 C -0.225 4.225 5 C -0.070 4.070 6 Cl -0.035 7.035 7 C 0.021 3.979 8 O -0.292 6.292 9 C 0.044 3.956 10 C 0.056 3.944 11 C -0.536 4.536 12 H 0.072 0.928 13 C -0.172 4.172 14 N -0.522 5.522 15 Si 0.771 3.229 16 H -0.196 1.196 17 H -0.212 1.212 18 H -0.205 1.205 19 C -0.240 4.240 20 C -0.213 4.213 21 C -0.099 4.099 22 H 0.140 0.860 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.172 0.828 26 H 0.241 0.759 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.507 0.176 6.304 10.589 hybrid contribution 0.226 0.386 -0.736 0.861 sum -8.280 0.561 5.567 9.994 Atomic orbital electron populations 1.23314 0.76832 1.05441 1.01950 1.86070 1.23225 1.26246 1.89225 1.18720 0.91737 0.84231 0.98451 1.20825 1.00672 0.89620 1.11351 1.20996 0.90588 0.87986 1.07406 1.98297 1.71802 1.36309 1.97069 1.17913 0.87911 0.85792 1.06248 1.84943 1.79967 1.30793 1.33514 1.19107 0.94815 0.90457 0.91214 1.17628 0.86717 0.99980 0.90075 1.20610 1.10210 1.32463 0.90281 0.92849 1.25575 0.95269 0.94680 1.01646 1.70139 1.19556 1.33984 1.28503 0.85826 0.78727 0.78052 0.80282 1.19571 1.21225 1.20485 1.23092 1.02612 0.92749 1.05553 1.22886 1.02771 0.95349 1.00323 1.19853 0.90772 0.97664 1.01565 0.86037 0.91421 0.92654 0.82839 0.75869 0.93416 0.90172 0.90579 0.89854 0.89155 0.87441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.55 16 2 O -0.33 -11.65 10.50 -93.30 -0.98 -12.63 16 3 C 0.11 4.51 6.68 22.49 0.15 4.66 16 4 C -0.21 -7.36 8.82 22.38 0.20 -7.17 16 5 C -0.04 -1.63 6.33 22.40 0.14 -1.49 16 6 Cl -0.06 -2.05 28.50 -2.72 -0.08 -2.13 16 7 C 0.07 2.89 6.65 22.50 0.15 3.04 16 8 O -0.48 -19.72 12.17 -93.57 -1.14 -20.86 16 9 C 0.05 2.10 3.51 -19.78 -0.07 2.03 16 10 C 0.06 2.69 1.52 -53.68 -0.08 2.60 16 11 C -0.50 -26.95 9.06 25.60 0.23 -26.72 16 12 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 13 C 0.03 1.63 5.37 84.66 0.45 2.09 16 14 N -0.89 -49.15 10.02 21.45 0.21 -48.93 16 15 Si 0.94 44.09 29.54 68.60 2.03 46.11 16 16 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 17 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 19 C -0.20 -8.58 9.55 30.60 0.29 -8.28 16 20 C -0.18 -6.99 9.67 30.59 0.30 -6.69 16 21 C -0.08 -3.59 7.38 22.36 0.17 -3.42 16 22 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 23 H 0.07 1.31 7.66 -2.39 -0.02 1.29 16 24 H 0.05 1.23 7.66 -2.38 -0.02 1.21 16 25 H 0.15 4.45 6.29 -2.91 -0.02 4.43 16 26 H 0.39 11.84 9.06 -74.06 -0.67 11.17 16 27 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 28 H 0.08 3.16 8.00 -2.39 -0.02 3.14 16 29 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 30 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 31 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 32 H 0.11 5.16 7.92 -2.91 -0.02 5.14 16 Total: -1.00 -62.11 291.67 3.57 -58.55 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.48 Total: 17.71 kcal Atomic # 6 Polarization: -40.85 SS G_CDS: 3.04 Total: -37.81 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.21 Total: -48.93 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -2.12 Total: -33.49 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -0.08 Total: -2.13 kcal Total: -62.11 3.57 -58.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260535561.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.176 kcal (2) G-P(sol) polarization free energy of solvation -62.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds