Wall clock time and date at job start Mon Mar 30 2020 07:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38384 * 119.98058 * 2 1 4 4 Cl 1.73601 * 120.00409 * 0.02562 * 3 2 1 5 5 C 1.38302 * 119.99731 * 180.26076 * 3 2 1 6 6 C 1.38457 * 119.95927 * 359.74300 * 5 3 2 7 7 F 1.35102 * 120.01478 * 180.02562 * 6 5 3 8 8 C 1.38441 * 119.96270 * 0.02562 * 6 5 3 9 9 C 1.38205 * 119.97954 * 179.75379 * 2 1 3 10 10 C 1.50696 * 119.98096 * 0.02562 * 9 2 1 11 11 H 1.09002 * 109.47189 * 354.20423 * 10 9 2 12 12 C 1.50697 * 109.46907 * 234.19978 * 10 9 2 13 13 H 1.08000 * 120.00490 * 359.97438 * 12 10 9 14 14 C 1.37888 * 119.99580 * 180.02562 * 12 10 9 15 15 N 1.31508 * 120.00256 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99659 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47455 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46835 * 120.00217 * 16 14 12 19 19 H 1.48496 * 109.47044 * 240.00043 * 16 14 12 20 20 C 1.53002 * 109.46773 * 114.20099 * 10 9 2 21 21 C 1.52996 * 117.50368 * 299.99743 * 20 10 9 22 22 C 1.52995 * 60.03465 * 252.50176 * 21 20 10 23 23 H 1.09007 * 109.46692 * 264.73734 * 1 2 3 24 24 H 1.09000 * 109.47094 * 24.73462 * 1 2 3 25 25 H 1.09004 * 109.47421 * 144.74045 * 1 2 3 26 26 H 1.07993 * 120.01579 * 179.72904 * 5 3 2 27 27 H 1.08000 * 119.99573 * 180.02562 * 8 6 5 28 28 H 0.96995 * 120.00405 * 179.97438 * 15 14 12 29 29 H 1.09000 * 115.54764 * 85.67530 * 20 10 9 30 30 H 1.09007 * 117.49529 * 0.02562 * 21 20 10 31 31 H 1.09002 * 117.49916 * 144.99421 * 21 20 10 32 32 H 1.09000 * 117.50381 * 107.49714 * 22 21 20 33 33 H 1.09002 * 117.49814 * 252.52437 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1987 0.0000 4 17 1.3301 2.7019 0.0007 5 6 3.5815 1.1991 -0.0055 6 6 4.2733 -0.0003 -0.0055 7 9 5.6243 -0.0012 -0.0103 8 6 3.5798 -1.1985 -0.0007 9 6 2.1976 -1.1971 0.0051 10 6 1.4432 -2.5017 0.0102 11 1 0.3762 -2.3040 0.1127 12 6 1.9108 -3.3478 1.1662 13 1 2.6778 -2.9782 1.8305 14 6 1.3600 -4.5945 1.3750 15 7 0.4271 -5.0454 0.5652 16 14 1.9391 -5.6431 2.8084 17 1 2.9884 -4.9129 3.5639 18 1 0.7921 -5.9302 3.7069 19 1 2.4967 -6.9198 2.2942 20 6 1.7004 -3.2445 -1.3025 21 6 1.2919 -2.5463 -2.6011 22 6 0.4816 -3.7376 -2.0864 23 1 -0.3633 -0.0943 1.0234 24 1 -0.3633 0.9334 -0.4300 25 1 -0.3634 -0.8391 -0.5933 26 1 4.1214 2.1343 -0.0099 27 1 4.1189 -2.1343 -0.0003 28 1 0.0399 -5.9225 0.7119 29 1 2.5973 -3.8634 -1.3244 30 1 0.8402 -1.5575 -2.5204 31 1 1.9201 -2.7058 -3.4775 32 1 -0.5034 -3.5329 -1.6670 33 1 0.5771 -4.6811 -2.6239 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260542048.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:45 Heat of formation + Delta-G solvation = -27.078429 kcal Electronic energy + Delta-G solvation = -18333.853097 eV Core-core repulsion = 15299.672312 eV Total energy + Delta-G solvation = -3034.180785 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.89517 -40.72314 -38.19625 -37.25311 -34.67768 -33.57848 -32.55554 -29.28587 -27.40818 -25.57667 -23.49610 -22.88870 -22.23361 -20.79700 -18.64174 -18.31120 -17.43188 -16.62371 -16.52239 -16.37922 -15.91728 -15.53295 -15.03812 -14.79170 -14.59770 -14.40714 -13.79375 -13.28217 -13.07101 -12.89397 -12.86951 -12.84068 -12.31720 -12.27865 -12.10778 -11.86059 -11.68852 -11.61045 -11.55087 -10.63895 -10.52284 -10.19205 -9.61755 -9.37405 -8.04235 -6.15519 0.09543 0.23046 1.04671 1.40782 1.45959 1.54108 2.43212 2.57405 3.22657 3.31331 3.37984 3.81832 3.94086 4.07828 4.22856 4.27705 4.47543 4.52321 4.69332 4.74503 4.79545 4.93325 5.01137 5.03246 5.10832 5.26428 5.30392 5.42792 5.47003 5.53074 5.66354 5.79991 5.87078 6.04295 6.36097 6.90525 7.50422 8.99903 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.018120 B = 0.006907 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.922137 B = 4052.925733 C = 4427.776607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.011 4.011 4 Cl -0.049 7.049 5 C -0.157 4.157 6 C 0.094 3.906 7 F -0.141 7.141 8 C -0.143 4.143 9 C -0.007 4.007 10 C 0.107 3.893 11 H 0.035 0.965 12 C -0.531 4.531 13 H 0.048 0.952 14 C 0.030 3.970 15 N -0.890 5.890 16 Si 0.939 3.061 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.284 1.284 20 C -0.102 4.102 21 C -0.195 4.195 22 C -0.138 4.138 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.162 0.838 27 H 0.128 0.872 28 H 0.259 0.741 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.727 10.932 -3.278 11.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.038 4.038 4 Cl -0.020 7.020 5 C -0.176 4.176 6 C 0.075 3.925 7 F -0.120 7.120 8 C -0.162 4.162 9 C -0.008 4.008 10 C 0.089 3.911 11 H 0.053 0.947 12 C -0.569 4.569 13 H 0.066 0.934 14 C -0.171 4.171 15 N -0.527 5.527 16 Si 0.766 3.234 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.121 4.121 21 C -0.232 4.232 22 C -0.175 4.175 23 H 0.091 0.909 24 H 0.104 0.896 25 H 0.086 0.914 26 H 0.180 0.820 27 H 0.146 0.854 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.576 10.916 -3.311 11.515 hybrid contribution 0.535 -1.029 0.870 1.449 sum 2.111 9.887 -2.441 10.400 Atomic orbital electron populations 1.20857 0.89539 1.03424 1.02997 1.19871 0.97789 0.90635 1.01663 1.20403 0.91539 0.86968 1.04852 1.98333 1.76349 1.30482 1.96829 1.20894 0.92659 0.98062 1.06025 1.17473 0.76693 0.94117 1.04260 1.91465 1.28941 1.97415 1.94180 1.21115 0.94978 0.97137 1.03011 1.20030 0.92773 0.95581 0.92391 1.17451 0.94762 0.86920 0.91964 0.94673 1.21279 1.22124 1.01473 1.11987 0.93383 1.25489 0.95151 0.98589 0.97892 1.70100 1.26591 1.18633 1.37360 0.85801 0.78160 0.78986 0.80434 1.19909 1.20887 1.20982 1.22003 0.97636 1.01159 0.91268 1.23087 1.04969 0.96851 0.98245 1.22368 0.96117 0.96203 1.02789 0.90924 0.89637 0.91354 0.82022 0.85448 0.93198 0.91846 0.89432 0.89059 0.90758 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.48 8.83 71.23 0.63 -2.85 16 2 C -0.10 -3.39 5.88 -19.84 -0.12 -3.50 16 3 C -0.01 -0.33 6.31 22.32 0.14 -0.18 16 4 Cl -0.05 -1.21 27.20 -2.72 -0.07 -1.28 16 5 C -0.16 -4.59 9.81 22.34 0.22 -4.37 16 6 C 0.09 3.14 7.30 22.37 0.16 3.30 16 7 F -0.14 -4.59 17.27 44.97 0.78 -3.82 16 8 C -0.14 -5.47 8.75 22.32 0.20 -5.28 16 9 C -0.01 -0.29 4.40 -19.88 -0.09 -0.37 16 10 C 0.11 4.86 1.83 -12.29 -0.02 4.84 16 11 H 0.04 1.70 5.47 -2.39 -0.01 1.69 16 12 C -0.53 -27.21 8.07 25.60 0.21 -27.00 16 13 H 0.05 2.51 7.44 -2.91 -0.02 2.49 16 14 C 0.03 1.58 5.30 84.66 0.45 2.02 16 15 N -0.89 -47.09 11.44 21.45 0.25 -46.84 16 16 Si 0.94 42.03 29.54 68.60 2.03 44.06 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 C -0.10 -4.43 3.99 -10.77 -0.04 -4.48 16 21 C -0.19 -7.04 9.87 30.59 0.30 -6.74 16 22 C -0.14 -5.65 9.06 30.62 0.28 -5.37 16 23 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 24 H 0.08 2.23 6.69 -2.39 -0.02 2.21 16 25 H 0.07 2.28 6.46 -2.38 -0.02 2.26 16 26 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 27 H 0.13 5.11 7.91 -2.91 -0.02 5.08 16 28 H 0.26 13.24 8.31 -92.71 -0.77 12.47 16 29 H 0.06 2.99 8.11 -2.39 -0.02 2.97 16 30 H 0.09 3.02 8.08 -2.38 -0.02 3.00 16 31 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.07 3.21 8.05 -2.39 -0.02 3.20 16 33 H 0.07 2.91 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -52.28 295.17 6.41 -45.87 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 1.12 Total: 12.00 kcal Atomic # 6 Polarization: -52.29 SS G_CDS: 2.31 Total: -49.98 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.25 Total: -46.84 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.78 Total: -3.82 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.07 Total: -1.28 kcal Total: -52.28 6.41 -45.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260542048.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.790 kcal (2) G-P(sol) polarization free energy of solvation -52.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds