Wall clock time and date at job start Mon Mar 30 2020 08:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81390 * 1 3 3 O 1.42105 * 108.58022 * 2 1 4 4 O 1.42103 * 108.57818 * 228.97572 * 2 1 3 5 5 C 1.81401 * 101.92507 * 114.48461 * 2 1 3 6 6 C 1.50696 * 109.47062 * 179.97438 * 5 2 1 7 7 C 1.38238 * 119.99767 * 90.00735 * 6 5 2 8 8 C 1.38235 * 120.00108 * 179.97438 * 7 6 5 9 9 C 1.38243 * 119.99617 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99586 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47116 * 89.99867 * 10 9 8 12 12 C 1.50696 * 109.47110 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00016 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99838 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00031 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00185 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.47149 * 90.00329 * 16 14 12 18 18 H 1.48498 * 109.47145 * 210.00267 * 16 14 12 19 19 H 1.48503 * 109.46880 * 330.00167 * 16 14 12 20 20 C 1.38233 * 120.00248 * 0.25361 * 9 8 7 21 21 C 1.38234 * 120.00185 * 270.02141 * 6 5 2 22 22 H 1.09011 * 109.47177 * 305.51378 * 1 2 3 23 23 H 1.08998 * 109.47352 * 65.51393 * 1 2 3 24 24 H 1.09005 * 109.47427 * 185.51656 * 1 2 3 25 25 H 1.09000 * 109.46635 * 60.00197 * 5 2 1 26 26 H 1.09000 * 109.46873 * 299.99716 * 5 2 1 27 27 H 1.08000 * 120.00559 * 359.97438 * 7 6 5 28 28 H 1.07999 * 120.00165 * 179.97438 * 8 7 6 29 29 H 1.09000 * 109.46646 * 209.99280 * 10 9 8 30 30 H 1.09000 * 109.47248 * 329.99998 * 10 9 8 31 31 H 1.09000 * 109.47214 * 300.00167 * 11 10 9 32 32 H 1.09008 * 109.47142 * 59.99333 * 11 10 9 33 33 H 0.97000 * 120.00433 * 179.97438 * 15 14 12 34 34 H 1.08004 * 119.99934 * 179.72684 * 20 9 8 35 35 H 1.07999 * 119.99990 * 0.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2666 -0.8841 -1.0162 5 6 2.1887 -0.7356 1.6153 6 6 3.6826 -0.8182 1.7951 7 6 4.3683 0.2335 2.3738 8 6 5.7386 0.1576 2.5392 9 6 6.4233 -0.9699 2.1255 10 6 7.9173 -1.0524 2.3054 11 6 8.2335 -1.6729 3.6677 12 6 9.7274 -1.7560 3.8473 13 1 10.3855 -1.4013 3.0679 14 6 10.2540 -2.2849 5.0066 15 7 11.5577 -2.3569 5.1636 16 14 9.1156 -2.8977 6.3549 17 1 8.8125 -4.3342 6.1318 18 1 9.7761 -2.7304 7.6744 19 1 7.8534 -2.1157 6.3305 20 6 5.7385 -2.0191 1.5416 21 6 4.3674 -1.9454 1.3811 22 1 -0.3634 0.5970 0.8366 23 1 -0.3634 0.4259 -0.9352 24 1 -0.3634 -1.0229 0.0988 25 1 1.7611 -1.7369 1.6665 26 1 1.7611 -0.1169 2.4042 27 1 3.8335 1.1144 2.6966 28 1 6.2744 0.9793 2.9910 29 1 8.3446 -1.6712 1.5163 30 1 8.3453 -0.0512 2.2541 31 1 7.8061 -1.0542 4.4568 32 1 7.8054 -2.6741 3.7191 33 1 11.9283 -2.7286 5.9793 34 1 6.2740 -2.8980 1.2143 35 1 3.8318 -2.7667 0.9284 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260552303.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:14:28 Heat of formation + Delta-G solvation = -59.702322 kcal Electronic energy + Delta-G solvation = -17599.834324 eV Core-core repulsion = 14689.742872 eV Total energy + Delta-G solvation = -2910.091452 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.33984 -37.17498 -36.20236 -34.77936 -32.74884 -30.90311 -30.76472 -29.94944 -27.52885 -24.47766 -22.57895 -21.39557 -20.01749 -19.10867 -16.97898 -16.88733 -16.64433 -16.35504 -15.39683 -15.28858 -14.86568 -14.25971 -13.73470 -13.60860 -13.31436 -13.25333 -12.96424 -12.92678 -12.56875 -12.43308 -12.25600 -12.17845 -11.61423 -11.54625 -11.27952 -11.07431 -10.79797 -10.75255 -10.13921 -9.89471 -9.71935 -9.20832 -8.74873 -8.54893 -8.23014 -6.05672 -4.04112 -0.37411 1.50948 1.59318 2.48270 3.29940 3.37363 3.38684 3.41787 3.69073 3.95435 4.29015 4.32867 4.40118 4.44189 4.70226 5.10282 5.13153 5.19533 5.22963 5.28564 5.36296 5.69565 5.71327 6.05391 6.10789 6.33045 6.43815 6.55812 6.60397 6.77776 6.92946 7.18311 7.26758 7.41680 7.76708 8.51600 8.99098 9.56582 11.07688 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.045997 B = 0.003629 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.594381 B = 7713.585700 C = 7842.088306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.662 4.662 2 S 2.414 3.586 3 O -0.934 6.934 4 O -0.934 6.934 5 C -0.552 4.552 6 C -0.120 4.120 7 C -0.099 4.099 8 C -0.121 4.121 9 C -0.047 4.047 10 C -0.075 4.075 11 C -0.005 4.005 12 C -0.522 4.522 13 H 0.073 0.927 14 C 0.067 3.933 15 N -0.903 5.903 16 Si 0.879 3.121 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.265 1.265 20 C -0.121 4.121 21 C -0.099 4.099 22 H 0.127 0.873 23 H 0.128 0.872 24 H 0.127 0.873 25 H 0.137 0.863 26 H 0.137 0.863 27 H 0.124 0.876 28 H 0.128 0.872 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.017 0.983 32 H 0.013 0.987 33 H 0.263 0.737 34 H 0.128 0.872 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.799 3.511 -7.625 26.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.811 4.811 2 S 2.596 3.404 3 O -0.931 6.931 4 O -0.931 6.931 5 C -0.680 4.680 6 C -0.121 4.121 7 C -0.118 4.118 8 C -0.139 4.139 9 C -0.048 4.048 10 C -0.113 4.113 11 C -0.043 4.043 12 C -0.560 4.560 13 H 0.091 0.909 14 C -0.134 4.134 15 N -0.542 5.542 16 Si 0.706 3.294 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.190 1.190 20 C -0.139 4.139 21 C -0.118 4.118 22 H 0.146 0.854 23 H 0.146 0.854 24 H 0.146 0.854 25 H 0.155 0.845 26 H 0.155 0.845 27 H 0.142 0.858 28 H 0.146 0.854 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.036 0.964 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.146 0.854 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -24.138 3.766 -8.176 25.762 hybrid contribution -1.183 -0.709 1.503 2.040 sum -25.321 3.057 -6.673 26.364 Atomic orbital electron populations 1.30349 1.27677 1.11384 1.11642 1.08303 0.77921 0.76126 0.78022 1.93599 1.78727 1.34419 1.86354 1.93599 1.78730 1.66921 1.53849 1.29198 1.02056 1.14065 1.22655 1.18697 0.90755 0.96927 1.05756 1.21040 0.94790 0.97641 0.98321 1.21135 0.93704 0.98553 1.00486 1.20563 0.97974 0.92843 0.93372 1.20714 0.87868 1.02111 1.00559 1.19547 0.97570 0.95433 0.91702 1.21141 0.89979 1.41140 1.03726 0.90868 1.25015 0.94883 0.95306 0.98200 1.69911 1.10855 1.46114 1.27306 0.86791 0.81504 0.79615 0.81489 1.20271 1.21353 1.19000 1.21135 0.93689 0.99113 0.99973 1.21039 0.94785 0.96926 0.99040 0.85447 0.85380 0.85447 0.84461 0.84460 0.85755 0.85394 0.91339 0.91313 0.96442 0.96892 0.92702 0.85388 0.85753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.60 10.62 101.05 1.07 -1.53 16 2 S 2.41 20.49 5.34 -107.50 -0.57 19.91 16 3 O -0.93 -11.63 18.10 -57.83 -1.05 -12.68 16 4 O -0.93 -11.63 18.10 -57.83 -1.05 -12.67 16 5 C -0.55 -4.18 5.93 36.00 0.21 -3.96 16 6 C -0.12 -1.52 5.14 -104.63 -0.54 -2.06 16 7 C -0.10 -1.36 9.70 -39.58 -0.38 -1.75 16 8 C -0.12 -1.92 9.70 -39.58 -0.38 -2.30 16 9 C -0.05 -0.82 5.13 -104.62 -0.54 -1.36 16 10 C -0.08 -1.49 5.28 -27.88 -0.15 -1.64 16 11 C -0.01 -0.12 4.02 -27.89 -0.11 -0.24 16 12 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 13 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 14 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 15 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 16 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 20 C -0.12 -1.92 9.70 -39.58 -0.38 -2.30 16 21 C -0.10 -1.36 9.70 -39.58 -0.38 -1.74 16 22 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 23 H 0.13 0.47 8.14 -51.92 -0.42 0.04 16 24 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 25 H 0.14 0.65 8.08 -51.92 -0.42 0.23 16 26 H 0.14 0.65 8.09 -51.92 -0.42 0.23 16 27 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 28 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 29 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 30 H 0.07 1.34 8.09 -51.93 -0.42 0.92 16 31 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 32 H 0.01 0.30 7.57 -51.92 -0.39 -0.09 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.13 1.88 8.06 -52.48 -0.42 1.45 16 35 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 313.85 15.07 4.73 4.73 Total: -1.00 -37.18 313.85 -8.84 -46.01 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -4.99 Total: -3.11 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: -2.01 Total: -32.21 kcal Atomic # 7 Polarization: -27.90 SS G_CDS: 0.77 Total: -27.13 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -2.09 Total: -25.35 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Atomic # 16 Polarization: 20.49 SS G_CDS: -0.57 Total: 19.91 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -37.18 -8.84 -46.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260552303.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.688 kcal (2) G-P(sol) polarization free energy of solvation -37.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds