Wall clock time and date at job start Mon Mar 30 2020 08:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81390 * 1 3 3 O 1.42105 * 108.58022 * 2 1 4 4 O 1.42103 * 108.57818 * 228.97572 * 2 1 3 5 5 C 1.81401 * 101.92507 * 114.48461 * 2 1 3 6 6 C 1.50696 * 109.47062 * 179.97438 * 5 2 1 7 7 C 1.38238 * 119.99767 * 90.00735 * 6 5 2 8 8 C 1.38235 * 120.00108 * 179.97438 * 7 6 5 9 9 C 1.38243 * 119.99617 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99586 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47116 * 89.99867 * 10 9 8 12 12 C 1.50696 * 109.47110 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00016 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99838 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00031 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00185 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.47149 * 90.00329 * 16 14 12 18 18 H 1.48498 * 109.47145 * 210.00267 * 16 14 12 19 19 H 1.48503 * 109.46880 * 330.00167 * 16 14 12 20 20 C 1.38233 * 120.00248 * 0.25361 * 9 8 7 21 21 C 1.38234 * 120.00185 * 270.02141 * 6 5 2 22 22 H 1.09011 * 109.47177 * 305.51378 * 1 2 3 23 23 H 1.08998 * 109.47352 * 65.51393 * 1 2 3 24 24 H 1.09005 * 109.47427 * 185.51656 * 1 2 3 25 25 H 1.09000 * 109.46635 * 60.00197 * 5 2 1 26 26 H 1.09000 * 109.46873 * 299.99716 * 5 2 1 27 27 H 1.08000 * 120.00559 * 359.97438 * 7 6 5 28 28 H 1.07999 * 120.00165 * 179.97438 * 8 7 6 29 29 H 1.09000 * 109.46646 * 209.99280 * 10 9 8 30 30 H 1.09000 * 109.47248 * 329.99998 * 10 9 8 31 31 H 1.09000 * 109.47214 * 300.00167 * 11 10 9 32 32 H 1.09008 * 109.47142 * 59.99333 * 11 10 9 33 33 H 0.97000 * 120.00433 * 179.97438 * 15 14 12 34 34 H 1.08004 * 119.99934 * 179.72684 * 20 9 8 35 35 H 1.07999 * 119.99990 * 0.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2666 -0.8841 -1.0162 5 6 2.1887 -0.7356 1.6153 6 6 3.6826 -0.8182 1.7951 7 6 4.3683 0.2335 2.3738 8 6 5.7386 0.1576 2.5392 9 6 6.4233 -0.9699 2.1255 10 6 7.9173 -1.0524 2.3054 11 6 8.2335 -1.6729 3.6677 12 6 9.7274 -1.7560 3.8473 13 1 10.3855 -1.4013 3.0679 14 6 10.2540 -2.2849 5.0066 15 7 11.5577 -2.3569 5.1636 16 14 9.1156 -2.8977 6.3549 17 1 8.8125 -4.3342 6.1318 18 1 9.7761 -2.7304 7.6744 19 1 7.8534 -2.1157 6.3305 20 6 5.7385 -2.0191 1.5416 21 6 4.3674 -1.9454 1.3811 22 1 -0.3634 0.5970 0.8366 23 1 -0.3634 0.4259 -0.9352 24 1 -0.3634 -1.0229 0.0988 25 1 1.7611 -1.7369 1.6665 26 1 1.7611 -0.1169 2.4042 27 1 3.8335 1.1144 2.6966 28 1 6.2744 0.9793 2.9910 29 1 8.3446 -1.6712 1.5163 30 1 8.3453 -0.0512 2.2541 31 1 7.8061 -1.0542 4.4568 32 1 7.8054 -2.6741 3.7191 33 1 11.9283 -2.7286 5.9793 34 1 6.2740 -2.8980 1.2143 35 1 3.8318 -2.7667 0.9284 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260552303.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:14:26 Heat of formation + Delta-G solvation = -86.404685 kcal Electronic energy + Delta-G solvation = -17600.992226 eV Core-core repulsion = 14689.742872 eV Total energy + Delta-G solvation = -2911.249354 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.45713 -37.92621 -36.95502 -36.30003 -34.57186 -32.40934 -31.86949 -30.38674 -28.88467 -26.01767 -23.68933 -23.00308 -21.47760 -19.76067 -19.02601 -17.62836 -17.46003 -17.07620 -16.44717 -16.35759 -16.32367 -15.91052 -14.84298 -14.74773 -14.30252 -14.29279 -13.95586 -13.87505 -13.86016 -13.51190 -13.19881 -13.03333 -12.95660 -12.86177 -12.82097 -12.09505 -12.02492 -11.85965 -11.66371 -11.60256 -11.53387 -11.31286 -10.78748 -9.86640 -9.39830 -8.31514 -6.36142 -0.97756 0.40882 0.46441 1.33844 1.35696 1.48278 1.94483 2.34373 2.72837 2.87966 3.03543 3.15933 3.55288 3.82538 4.03442 4.11457 4.11886 4.15753 4.33567 4.50158 4.55071 4.61843 4.69341 4.74644 4.91091 5.02165 5.12890 5.13415 5.37822 5.41056 5.44347 5.48044 5.63762 5.82111 6.05723 6.25473 6.71421 7.28603 8.85358 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.045997 B = 0.003629 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.594381 B = 7713.585700 C = 7842.088306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.633 4.633 2 S 2.407 3.593 3 O -0.986 6.986 4 O -0.986 6.986 5 C -0.550 4.550 6 C -0.116 4.116 7 C -0.108 4.108 8 C -0.135 4.135 9 C -0.078 4.078 10 C -0.066 4.066 11 C 0.002 3.998 12 C -0.535 4.535 13 H 0.033 0.967 14 C 0.005 3.995 15 N -0.951 5.951 16 Si 0.951 3.049 17 H -0.265 1.265 18 H -0.281 1.281 19 H -0.250 1.250 20 C -0.135 4.135 21 C -0.107 4.107 22 H 0.157 0.843 23 H 0.135 0.865 24 H 0.157 0.843 25 H 0.174 0.826 26 H 0.174 0.826 27 H 0.151 0.849 28 H 0.129 0.871 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.018 0.982 32 H 0.017 0.983 33 H 0.267 0.733 34 H 0.130 0.870 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.681 3.043 -6.685 30.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.786 4.786 2 S 2.596 3.404 3 O -0.983 6.983 4 O -0.983 6.983 5 C -0.678 4.678 6 C -0.118 4.118 7 C -0.126 4.126 8 C -0.153 4.153 9 C -0.078 4.078 10 C -0.103 4.103 11 C -0.035 4.035 12 C -0.573 4.573 13 H 0.052 0.948 14 C -0.192 4.192 15 N -0.591 5.591 16 Si 0.774 3.226 17 H -0.190 1.190 18 H -0.207 1.207 19 H -0.173 1.173 20 C -0.153 4.153 21 C -0.126 4.126 22 H 0.175 0.825 23 H 0.153 0.847 24 H 0.175 0.825 25 H 0.192 0.808 26 H 0.192 0.808 27 H 0.169 0.831 28 H 0.147 0.853 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.147 0.853 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -28.975 3.308 -7.261 30.053 hybrid contribution 0.232 -0.524 1.123 1.261 sum -28.742 2.784 -6.138 29.522 Atomic orbital electron populations 1.30080 1.20800 1.14196 1.13478 1.08021 0.80375 0.74432 0.77583 1.93541 1.81263 1.36545 1.86958 1.93541 1.81264 1.67570 1.55921 1.29264 0.98536 1.17095 1.22885 1.19232 0.93814 0.95600 1.03105 1.21408 0.94023 0.99035 0.98178 1.21287 0.95074 0.98153 1.00819 1.20317 0.96175 0.94742 0.96604 1.20463 0.90512 1.01109 0.98218 1.19427 0.94135 0.95929 0.94046 1.21494 0.92244 1.40680 1.02883 0.94828 1.26011 0.96573 0.95500 1.01094 1.70065 1.13112 1.47500 1.28436 0.85643 0.79569 0.79550 0.77812 1.18999 1.20658 1.17346 1.21289 0.95052 0.98815 1.00151 1.21411 0.94024 0.98383 0.98805 0.82472 0.84672 0.82467 0.80817 0.80833 0.83136 0.85325 0.92015 0.92044 0.96335 0.96458 0.92387 0.85251 0.83103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -1.53 10.62 113.37 1.20 -0.33 16 2 S 2.41 34.03 5.34 -56.49 -0.30 33.73 16 3 O -0.99 -23.21 18.10 -127.37 -2.31 -25.51 16 4 O -0.99 -23.18 18.10 -127.37 -2.31 -25.48 16 5 C -0.55 -5.74 5.93 71.23 0.42 -5.32 16 6 C -0.12 -2.63 5.14 -19.87 -0.10 -2.74 16 7 C -0.11 -2.77 9.70 22.27 0.22 -2.55 16 8 C -0.14 -4.28 9.70 22.27 0.22 -4.07 16 9 C -0.08 -2.76 5.13 -19.86 -0.10 -2.86 16 10 C -0.07 -2.72 5.28 29.85 0.16 -2.57 16 11 C 0.00 0.10 4.02 29.85 0.12 0.22 16 12 C -0.54 -31.70 9.66 25.60 0.25 -31.45 16 13 H 0.03 2.18 7.99 -2.91 -0.02 2.15 16 14 C 0.01 0.30 5.47 84.65 0.46 0.76 16 15 N -0.95 -60.58 13.96 21.45 0.30 -60.29 16 16 Si 0.95 45.08 27.47 68.60 1.88 46.96 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 20 C -0.14 -4.26 9.70 22.27 0.22 -4.04 16 21 C -0.11 -2.75 9.70 22.27 0.22 -2.54 16 22 H 0.16 -0.41 8.14 -2.38 -0.02 -0.43 16 23 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 24 H 0.16 -0.41 8.14 -2.39 -0.02 -0.43 16 25 H 0.17 0.59 8.08 -2.39 -0.02 0.57 16 26 H 0.17 0.60 8.09 -2.39 -0.02 0.58 16 27 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 28 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 29 H 0.06 2.56 8.08 -2.39 -0.02 2.54 16 30 H 0.06 2.55 8.09 -2.39 -0.02 2.53 16 31 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 32 H 0.02 0.82 7.57 -2.38 -0.02 0.80 16 33 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 34 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 35 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -85.56 313.85 1.55 -84.01 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: 1.01 Total: 4.05 kcal Atomic # 6 Polarization: -60.75 SS G_CDS: 3.28 Total: -57.48 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: 0.30 Total: -60.29 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: -4.61 Total: -51.00 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.96 kcal Atomic # 16 Polarization: 34.03 SS G_CDS: -0.30 Total: 33.73 kcal Total: -85.56 1.55 -84.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260552303.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.395 kcal (2) G-P(sol) polarization free energy of solvation -85.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds