Wall clock time and date at job start Mon Mar 30 2020 07:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 119.96736 * 2 1 4 4 C 1.38272 * 120.01482 * 180.02562 * 3 2 1 5 5 Cl 1.73595 * 120.02784 * 179.97438 * 4 3 2 6 6 C 1.38589 * 119.95022 * 359.97438 * 4 3 2 7 7 F 1.35102 * 120.03467 * 180.02562 * 6 4 3 8 8 C 1.38408 * 119.94041 * 359.97438 * 6 4 3 9 9 C 1.50694 * 120.00773 * 179.97438 * 8 6 4 10 10 H 1.08993 * 109.47288 * 0.02562 * 9 8 6 11 11 C 1.50697 * 109.47118 * 239.99907 * 9 8 6 12 12 H 1.08008 * 119.99864 * 275.64913 * 11 9 8 13 13 C 1.37876 * 120.00138 * 95.65281 * 11 9 8 14 14 N 1.31512 * 119.99836 * 6.12450 * 13 11 9 15 15 Si 1.86799 * 120.00386 * 186.12106 * 13 11 9 16 16 H 1.48502 * 109.46908 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47104 * 119.99982 * 15 13 11 18 18 H 1.48495 * 109.47367 * 240.00548 * 15 13 11 19 19 C 1.53007 * 109.46692 * 120.00195 * 9 8 6 20 20 C 1.53006 * 117.49726 * 254.02415 * 19 9 8 21 21 C 1.53003 * 117.49410 * 185.40408 * 19 9 8 22 22 C 1.38215 * 119.97137 * 179.97438 * 2 1 3 23 23 H 1.09003 * 109.47154 * 90.00284 * 1 2 3 24 24 H 1.09004 * 109.46835 * 209.99566 * 1 2 3 25 25 H 1.08995 * 109.47487 * 329.99682 * 1 2 3 26 26 H 1.08008 * 119.99463 * 0.27745 * 3 2 1 27 27 H 0.96998 * 120.00311 * 180.02562 * 14 13 11 28 28 H 1.08994 * 115.55442 * 39.73345 * 19 9 8 29 29 H 1.09002 * 117.49666 * 0.02562 * 20 19 9 30 30 H 1.08995 * 117.49742 * 145.02346 * 20 19 9 31 31 H 1.09003 * 117.49903 * 214.97649 * 21 19 9 32 32 H 1.08995 * 117.50032 * 359.97438 * 21 19 9 33 33 H 1.08002 * 119.97660 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1978 0.0000 4 6 3.5804 1.1989 -0.0005 5 17 4.4478 2.7026 -0.0012 6 6 4.2733 -0.0013 -0.0005 7 9 5.6243 -0.0022 -0.0005 8 6 3.5799 -1.1992 0.0005 9 6 4.3318 -2.5052 0.0000 10 1 5.4036 -2.3074 -0.0009 11 6 3.9654 -3.2953 -1.2299 12 1 3.0793 -3.9129 -1.2308 13 6 4.7611 -3.2297 -2.3539 14 7 5.9015 -2.5757 -2.3150 15 14 4.2198 -4.0699 -3.9320 16 1 2.9085 -4.7325 -3.7153 17 1 4.0904 -3.0588 -5.0118 18 1 5.2295 -5.0859 -4.3235 19 6 3.9625 -3.3067 1.2499 20 6 5.0016 -3.3871 2.3701 21 6 4.7184 -4.6133 1.5000 22 6 2.1975 -1.1973 0.0005 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3634 0.8899 0.5138 26 1 1.6570 2.1328 0.0045 27 1 6.4612 -2.5293 -3.1058 28 1 2.9123 -3.2697 1.5389 29 1 5.9481 -2.8685 2.2168 30 1 4.6350 -3.4027 3.3964 31 1 4.1654 -5.4357 1.9540 32 1 5.4783 -4.9020 0.7739 33 1 1.6566 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260556185.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:01 Heat of formation + Delta-G solvation = -33.641149 kcal Electronic energy + Delta-G solvation = -18344.246083 eV Core-core repulsion = 15309.780717 eV Total energy + Delta-G solvation = -3034.465366 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.65550 -40.33239 -38.31897 -37.44005 -34.97394 -33.38336 -32.35656 -29.05109 -27.43332 -25.73230 -23.68830 -23.01021 -21.96320 -20.72249 -18.50956 -18.47024 -17.44921 -16.69516 -16.59988 -16.43364 -15.86645 -15.00344 -14.90780 -14.45966 -14.42917 -14.16913 -13.84716 -13.45529 -13.24174 -13.02007 -12.89099 -12.59858 -12.49559 -12.25616 -12.12818 -12.08247 -11.82932 -11.62994 -11.16341 -10.99405 -10.57521 -10.42866 -9.51434 -9.24008 -8.11883 -6.21789 0.17555 0.38390 1.06215 1.38789 1.41582 1.51826 2.40147 2.66838 3.13891 3.26423 3.40709 3.90254 4.05661 4.11804 4.30755 4.35266 4.36928 4.42052 4.73722 4.82568 4.89493 4.95740 4.97199 5.08086 5.13257 5.20913 5.33415 5.38601 5.44804 5.57923 5.62845 5.74064 5.92536 6.04840 6.28461 6.92506 7.43760 8.94686 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.007801 C = 0.007428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.344681 B = 3588.313913 C = 3768.565831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.082 4.082 3 C -0.109 4.109 4 C -0.078 4.078 5 Cl -0.066 7.066 6 C 0.059 3.941 7 F -0.147 7.147 8 C -0.062 4.062 9 C 0.088 3.912 10 H 0.033 0.967 11 C -0.501 4.501 12 H 0.064 0.936 13 C 0.014 3.986 14 N -0.918 5.918 15 Si 0.947 3.053 16 H -0.256 1.256 17 H -0.288 1.288 18 H -0.284 1.284 19 C -0.134 4.134 20 C -0.188 4.188 21 C -0.165 4.165 22 C -0.092 4.092 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.164 0.836 27 H 0.258 0.742 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.346 4.928 6.396 13.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.083 4.083 3 C -0.128 4.128 4 C -0.105 4.105 5 Cl -0.037 7.037 6 C 0.039 3.961 7 F -0.126 7.126 8 C -0.064 4.064 9 C 0.070 3.930 10 H 0.052 0.948 11 C -0.539 4.539 12 H 0.082 0.918 13 C -0.185 4.185 14 N -0.556 5.556 15 Si 0.773 3.227 16 H -0.180 1.180 17 H -0.214 1.214 18 H -0.211 1.211 19 C -0.152 4.152 20 C -0.225 4.225 21 C -0.202 4.202 22 C -0.110 4.110 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.106 0.894 26 H 0.181 0.819 27 H 0.067 0.933 28 H 0.123 0.877 29 H 0.085 0.915 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.085 0.915 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.058 5.101 6.289 12.913 hybrid contribution 1.114 -0.180 -1.218 1.660 sum -8.944 4.921 5.071 11.399 Atomic orbital electron populations 1.20813 0.87341 1.04383 1.03473 1.20260 0.98390 0.91209 0.98421 1.20941 0.89596 1.00140 1.02078 1.21118 0.94023 0.85160 1.10230 1.98320 1.77303 1.30883 1.97173 1.17750 0.77069 0.93835 1.07421 1.91431 1.29793 1.97255 1.94142 1.20806 0.95600 0.94699 0.95276 1.17493 0.95413 0.87838 0.92286 0.94846 1.21184 1.09590 1.26109 0.96981 0.91772 1.25770 0.94684 0.96047 1.02049 1.70111 1.12078 1.43769 1.29691 0.85659 0.78956 0.78135 0.79922 1.17976 1.21416 1.21060 1.22375 0.96607 1.00135 0.96074 1.23010 1.00211 1.02774 0.96473 1.22710 1.03527 0.91845 1.02079 1.21005 0.91939 0.99028 0.99050 0.90157 0.90171 0.89367 0.81855 0.93266 0.87676 0.91457 0.87092 0.87279 0.91471 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.98 10.01 71.24 0.71 -1.26 16 2 C -0.08 -2.40 5.88 -19.86 -0.12 -2.51 16 3 C -0.11 -3.28 9.48 22.28 0.21 -3.07 16 4 C -0.08 -2.91 6.33 22.36 0.14 -2.77 16 5 Cl -0.07 -2.21 28.62 -2.72 -0.08 -2.29 16 6 C 0.06 2.68 7.22 22.39 0.16 2.84 16 7 F -0.15 -7.53 15.77 44.97 0.71 -6.82 16 8 C -0.06 -2.76 4.78 -19.82 -0.09 -2.85 16 9 C 0.09 4.30 2.22 -12.29 -0.03 4.28 16 10 H 0.03 1.92 6.00 -2.39 -0.01 1.90 16 11 C -0.50 -26.07 7.71 25.60 0.20 -25.87 16 12 H 0.06 3.21 7.82 -2.91 -0.02 3.19 16 13 C 0.01 0.76 5.45 84.65 0.46 1.22 16 14 N -0.92 -54.42 12.76 21.45 0.27 -54.14 16 15 Si 0.95 43.21 29.54 68.60 2.03 45.24 16 16 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 17 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 C -0.13 -5.35 4.93 -10.79 -0.05 -5.40 16 20 C -0.19 -6.77 10.18 30.60 0.31 -6.46 16 21 C -0.16 -6.15 10.01 30.60 0.31 -5.84 16 22 C -0.09 -3.32 8.32 22.27 0.19 -3.13 16 23 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.08 1.36 8.08 -2.39 -0.02 1.34 16 25 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 26 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 27 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 28 H 0.11 3.73 7.43 -2.39 -0.02 3.71 16 29 H 0.07 2.68 8.08 -2.39 -0.02 2.66 16 30 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 31 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.14 4.66 7.80 -2.91 -0.02 4.64 16 Total: -1.00 -63.04 302.76 6.44 -56.60 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 1.11 Total: 12.26 kcal Atomic # 6 Polarization: -53.24 SS G_CDS: 2.40 Total: -50.84 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.27 Total: -54.14 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 0.71 Total: -6.82 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 17 Polarization: -2.21 SS G_CDS: -0.08 Total: -2.29 kcal Total: -63.04 6.44 -56.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260556185.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.955 kcal (2) G-P(sol) polarization free energy of solvation -63.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds