Wall clock time and date at job start Mon Mar 30 2020 07:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38234 * 120.00240 * 0.26327 * 4 3 2 6 6 S 1.76203 * 120.00235 * 179.97438 * 5 4 3 7 7 O 1.42101 * 104.27768 * 206.07062 * 6 5 4 8 8 O 1.42098 * 104.27371 * 333.92656 * 6 5 4 9 9 C 1.81400 * 104.44796 * 89.99856 * 6 5 4 10 10 C 1.52998 * 109.46894 * 179.97438 * 9 6 5 11 11 H 1.08998 * 109.47695 * 305.00464 * 10 9 6 12 12 C 1.53009 * 109.46844 * 65.00378 * 10 9 6 13 13 C 1.50701 * 109.47015 * 184.99928 * 10 9 6 14 14 H 1.08001 * 120.00080 * 0.02562 * 13 10 9 15 15 C 1.37880 * 119.99927 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99865 * 180.02562 * 15 13 10 17 17 Si 1.86793 * 120.00146 * 359.97438 * 15 13 10 18 18 H 1.48508 * 109.47160 * 90.00109 * 17 15 13 19 19 H 1.48498 * 109.47461 * 210.00277 * 17 15 13 20 20 H 1.48502 * 109.47402 * 330.00846 * 17 15 13 21 21 C 1.38238 * 119.99693 * 0.02562 * 5 4 3 22 22 C 1.38234 * 120.00063 * 359.97438 * 21 5 4 23 23 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 24 24 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 25 25 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 26 26 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 27 27 H 1.07999 * 120.00009 * 180.28389 * 4 3 2 28 28 H 1.09002 * 109.47491 * 300.00054 * 9 6 5 29 29 H 1.09008 * 109.47194 * 60.00426 * 9 6 5 30 30 H 1.08996 * 109.46854 * 299.99602 * 12 10 9 31 31 H 1.08998 * 109.46904 * 59.99602 * 12 10 9 32 32 H 1.08999 * 109.46542 * 179.97438 * 12 10 9 33 33 H 0.96998 * 119.99909 * 179.97438 * 16 15 13 34 34 H 1.08002 * 119.99673 * 179.97438 * 21 5 4 35 35 H 1.08000 * 120.00005 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0060 6 16 6.0337 -0.0001 0.0127 7 8 6.3864 -1.2359 -0.5936 8 8 6.3863 1.2381 -0.5888 9 6 6.4796 -0.0035 1.7710 10 6 8.0032 -0.0045 1.9107 11 1 8.4186 -0.8453 1.3553 12 6 8.5673 1.3038 1.3526 13 6 8.3742 -0.1311 3.3658 14 1 7.6006 -0.2041 4.1160 15 6 9.7012 -0.1538 3.7395 16 7 10.0249 -0.2648 5.0094 17 14 11.0391 -0.0283 2.4422 18 1 11.3828 1.3996 2.2219 19 1 12.2452 -0.7624 2.9022 20 1 10.5531 -0.6221 1.1707 21 6 3.5805 -1.1972 0.0000 22 6 2.1981 -1.1972 -0.0058 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5137 25 1 -0.3633 0.8900 0.5139 26 1 1.6582 2.1325 0.0004 27 1 4.1205 2.1324 0.0104 28 1 6.0709 0.8855 2.2513 29 1 6.0709 -0.8945 2.2478 30 1 8.2990 1.3954 0.3002 31 1 8.1519 2.1447 1.9080 32 1 9.6527 1.3033 1.4525 33 1 10.9584 -0.2812 5.2723 34 1 4.1205 -2.1325 -0.0002 35 1 1.6581 -2.1325 -0.0109 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260598132.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:48 Heat of formation + Delta-G solvation = -51.360638 kcal Electronic energy + Delta-G solvation = -18256.841595 eV Core-core repulsion = 15347.111865 eV Total energy + Delta-G solvation = -2909.729730 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.41033 -36.70797 -35.65289 -35.22612 -33.16661 -31.80959 -31.14141 -27.64970 -26.93242 -25.13658 -22.95763 -22.00263 -20.22857 -18.71862 -17.77850 -16.83109 -15.97722 -15.57686 -15.34120 -15.00818 -14.77310 -14.36269 -14.07078 -13.64570 -13.63480 -12.91153 -12.58846 -12.46302 -12.40678 -12.34593 -12.06322 -11.61860 -11.55067 -11.24872 -11.20967 -10.93637 -10.74658 -10.58959 -10.08699 -10.06381 -9.41827 -9.20612 -9.13960 -8.99029 -8.64638 -6.16946 -4.18852 0.43649 0.80544 1.20689 3.24379 3.25080 3.36549 3.37868 3.39306 4.24686 4.34448 4.41338 4.56236 4.66266 4.81298 5.05754 5.14337 5.21151 5.25270 5.39429 5.42846 5.45608 5.60584 5.72854 5.85423 6.05032 6.06270 6.09687 6.29291 6.31751 6.39904 6.63479 6.74731 6.92046 7.21163 7.55959 8.37125 8.83431 9.43229 10.95374 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.035968 B = 0.004991 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.275009 B = 5608.737670 C = 5829.986664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.041 4.041 3 C -0.145 4.145 4 C -0.020 4.020 5 C -0.660 4.660 6 S 2.472 3.528 7 O -0.947 6.947 8 O -0.944 6.944 9 C -0.554 4.554 10 C 0.018 3.982 11 H 0.043 0.957 12 C -0.182 4.182 13 C -0.512 4.512 14 H 0.080 0.920 15 C 0.074 3.926 16 N -0.895 5.895 17 Si 0.880 3.120 18 H -0.274 1.274 19 H -0.293 1.293 20 H -0.263 1.263 21 C -0.021 4.021 22 C -0.145 4.145 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.130 0.870 27 H 0.142 0.858 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.266 0.734 34 H 0.142 0.858 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.037 1.071 -9.265 19.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.041 4.041 3 C -0.164 4.164 4 C -0.039 4.039 5 C -0.745 4.745 6 S 2.655 3.345 7 O -0.945 6.945 8 O -0.941 6.941 9 C -0.687 4.687 10 C -0.002 4.002 11 H 0.061 0.939 12 C -0.239 4.239 13 C -0.551 4.551 14 H 0.098 0.902 15 C -0.129 4.129 16 N -0.532 5.532 17 Si 0.710 3.290 18 H -0.201 1.201 19 H -0.221 1.221 20 H -0.187 1.187 21 C -0.040 4.040 22 C -0.164 4.164 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.148 0.852 27 H 0.160 0.840 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.160 0.840 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.425 1.058 -9.901 19.208 hybrid contribution 0.099 0.118 0.097 0.182 sum -16.327 1.176 -9.804 19.080 Atomic orbital electron populations 1.20909 0.90798 1.03299 1.02758 1.20230 0.96316 0.93422 0.94162 1.21162 0.94232 0.97860 1.03137 1.20995 0.94589 0.96939 0.91353 1.30887 1.27237 0.99234 1.17167 1.06288 0.73579 0.74776 0.79845 1.93524 1.81632 1.44558 1.74760 1.93514 1.81252 1.44248 1.75108 1.30084 1.08706 1.11380 1.18521 1.19022 0.85923 0.94852 1.00417 0.93890 1.22631 1.01339 1.00120 0.99833 1.20778 0.93420 1.51668 0.89210 0.90239 1.24973 0.98558 0.94115 0.95251 1.69869 1.18291 1.49672 1.15417 0.86945 0.81403 0.78219 0.82459 1.20101 1.22058 1.18734 1.21008 0.94622 0.96976 0.91353 1.21163 0.94212 0.97880 1.03097 0.90593 0.91050 0.91061 0.85232 0.83998 0.85216 0.85136 0.93097 0.91693 0.93139 0.92363 0.84026 0.85213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.01 36.00 0.36 -0.47 16 2 C -0.04 -0.42 5.88 -104.63 -0.62 -1.04 16 3 C -0.15 -1.59 9.70 -39.58 -0.38 -1.97 16 4 C -0.02 -0.26 9.47 -39.58 -0.37 -0.64 16 5 C -0.66 -9.60 5.66 -39.58 -0.22 -9.82 16 6 S 2.47 42.67 4.81 -107.50 -0.52 42.16 16 7 O -0.95 -18.68 17.13 -57.54 -0.99 -19.66 16 8 O -0.94 -17.89 14.88 -57.54 -0.86 -18.74 16 9 C -0.55 -9.99 5.36 37.16 0.20 -9.79 16 10 C 0.02 0.42 1.89 -91.77 -0.17 0.25 16 11 H 0.04 1.01 7.20 -51.93 -0.37 0.64 16 12 C -0.18 -4.02 8.36 37.16 0.31 -3.71 16 13 C -0.51 -13.89 9.14 -34.44 -0.31 -14.21 16 14 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 15 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 16 N -0.90 -26.75 13.96 55.43 0.77 -25.98 16 17 Si 0.88 21.74 24.37 -169.99 -4.14 17.60 16 18 H -0.27 -6.56 6.87 56.52 0.39 -6.17 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.26 -6.26 6.53 56.52 0.37 -5.89 16 21 C -0.02 -0.28 9.47 -39.58 -0.37 -0.65 16 22 C -0.14 -1.60 9.70 -39.58 -0.38 -1.98 16 23 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 25 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 26 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 27 H 0.14 1.68 7.57 -52.49 -0.40 1.28 16 28 H 0.13 2.08 8.14 -51.92 -0.42 1.65 16 29 H 0.13 2.13 8.14 -51.92 -0.42 1.71 16 30 H 0.05 1.03 5.61 -51.93 -0.29 0.74 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.14 1.73 7.57 -52.49 -0.40 1.33 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 298.12 15.07 4.49 4.49 Total: -1.00 -33.54 298.12 -7.91 -41.46 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -4.61 Total: 0.71 kcal Atomic # 6 Polarization: -39.96 SS G_CDS: -2.07 Total: -42.03 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.77 Total: -25.98 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -1.84 Total: -38.41 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.14 Total: 17.60 kcal Atomic # 16 Polarization: 42.67 SS G_CDS: -0.52 Total: 42.16 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.54 -7.91 -41.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260598132.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.902 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds