Wall clock time and date at job start Mon Mar 30 2020 07:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99935 * 2 1 4 4 C 1.38213 * 120.00039 * 180.28115 * 3 2 1 5 5 S 1.76204 * 120.00230 * 179.77115 * 4 3 2 6 6 C 1.81401 * 104.44758 * 269.97573 * 5 4 3 7 7 O 1.42096 * 104.27535 * 26.04421 * 5 4 3 8 8 O 1.42099 * 104.27687 * 153.90605 * 5 4 3 9 9 C 1.38257 * 119.99945 * 359.74428 * 4 3 2 10 10 C 1.38211 * 120.00115 * 359.97438 * 9 4 3 11 11 C 1.38210 * 120.00166 * 179.75270 * 2 1 3 12 12 C 1.50703 * 119.99959 * 359.97438 * 11 2 1 13 13 C 1.53000 * 109.46912 * 84.73029 * 12 11 2 14 14 C 1.50703 * 109.46912 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99776 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00001 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00114 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99955 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46999 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46979 * 120.00420 * 18 16 14 21 21 H 1.48498 * 109.46942 * 240.00334 * 18 16 14 22 22 H 1.09004 * 109.46714 * 270.24685 * 1 2 3 23 23 H 1.09001 * 109.47281 * 30.24784 * 1 2 3 24 24 H 1.09001 * 109.47263 * 150.25366 * 1 2 3 25 25 H 1.08001 * 120.00281 * 0.04654 * 3 2 1 26 26 H 1.08997 * 109.47021 * 59.99761 * 6 5 4 27 27 H 1.09005 * 109.47150 * 179.97438 * 6 5 4 28 28 H 1.09000 * 109.46927 * 300.00022 * 6 5 4 29 29 H 1.07998 * 120.00075 * 180.02562 * 9 4 3 30 30 H 1.07999 * 120.00450 * 180.02562 * 10 9 4 31 31 H 1.09002 * 109.47152 * 324.72801 * 12 11 2 32 32 H 1.09001 * 109.46980 * 204.72902 * 12 11 2 33 33 H 1.09001 * 109.47194 * 299.99742 * 13 12 11 34 34 H 1.08992 * 109.47399 * 59.99914 * 13 12 11 35 35 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0059 5 16 4.4614 2.7233 -0.0120 6 6 4.6809 3.1122 -1.7702 7 8 3.5677 3.6463 0.5950 8 8 5.7102 2.4093 0.5889 9 6 4.2717 0.0000 -0.0064 10 6 3.5807 -1.1969 -0.0005 11 6 2.1981 -1.1969 0.0052 12 6 1.4446 -2.5020 0.0114 13 6 1.0743 -2.8839 -1.4232 14 6 0.3214 -4.1894 -1.4170 15 1 0.1261 -4.6957 -0.4832 16 6 -0.1191 -4.7368 -2.6033 17 7 0.1182 -4.1200 -3.7403 18 14 -1.0518 -6.3553 -2.5958 19 1 -1.1865 -6.8423 -1.1994 20 1 -2.4013 -6.1516 -3.1810 21 1 -0.3093 -7.3582 -3.4008 22 1 -0.3633 0.0044 1.0277 23 1 -0.3634 0.8878 -0.5177 24 1 -0.3634 -0.8923 -0.5099 25 1 1.6583 2.1327 0.0008 26 1 3.7048 3.2039 -2.2466 27 1 5.2230 4.0526 -1.8694 28 1 5.2463 2.3139 -2.2510 29 1 5.3516 0.0000 -0.0106 30 1 4.1206 -2.1322 -0.0005 31 1 0.5365 -2.3945 0.6047 32 1 2.0715 -3.2814 0.4446 33 1 0.4474 -2.1046 -1.8564 34 1 1.9823 -2.9914 -2.0164 35 1 -0.1919 -4.5048 -4.5749 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260598542.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:34 Heat of formation + Delta-G solvation = -65.821251 kcal Electronic energy + Delta-G solvation = -17933.916895 eV Core-core repulsion = 15023.560106 eV Total energy + Delta-G solvation = -2910.356789 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.42985 -37.12690 -35.97877 -34.46018 -32.68091 -31.97778 -29.75710 -29.24810 -26.85964 -25.28301 -22.47628 -21.67401 -20.31249 -18.77011 -17.40413 -16.50310 -16.23861 -16.16492 -15.16758 -14.96830 -14.56031 -14.03297 -13.65740 -13.38305 -13.35521 -13.01815 -12.89196 -12.50732 -12.13198 -12.10818 -12.00044 -11.86073 -11.70648 -11.31363 -11.10335 -11.05389 -10.90475 -10.73453 -10.35202 -9.96532 -9.80708 -9.19573 -8.70184 -8.45102 -8.42669 -6.09924 -4.13455 0.03205 1.09004 1.53353 2.86081 3.24936 3.33037 3.36623 3.58197 3.97747 4.07460 4.38097 4.61078 4.75449 4.99445 5.04782 5.23835 5.26293 5.46905 5.48233 5.53918 5.70152 5.92086 5.98377 6.08379 6.19352 6.27251 6.42300 6.48333 6.59788 6.81743 6.91734 7.15234 7.55913 7.65164 7.88690 8.28169 8.93289 9.51527 11.01029 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.038786 B = 0.003950 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.737777 B = 7087.783611 C = 7167.430772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.104 4.104 3 C -0.027 4.027 4 C -0.674 4.674 5 S 2.505 3.495 6 C -0.651 4.651 7 O -0.945 6.945 8 O -0.945 6.945 9 C -0.031 4.031 10 C -0.140 4.140 11 C -0.002 4.002 12 C -0.091 4.091 13 C 0.031 3.969 14 C -0.524 4.524 15 H 0.057 0.943 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.284 1.284 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.089 0.911 25 H 0.135 0.865 26 H 0.132 0.868 27 H 0.127 0.873 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.022 0.978 34 H 0.018 0.982 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.097 12.801 4.324 15.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.105 4.105 3 C -0.046 4.046 4 C -0.762 4.762 5 S 2.686 3.314 6 C -0.801 4.801 7 O -0.942 6.942 8 O -0.942 6.942 9 C -0.050 4.050 10 C -0.159 4.159 11 C -0.002 4.002 12 C -0.128 4.128 13 C -0.006 4.006 14 C -0.562 4.562 15 H 0.076 0.924 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.108 0.892 25 H 0.153 0.847 26 H 0.150 0.850 27 H 0.146 0.854 28 H 0.150 0.850 29 H 0.153 0.847 30 H 0.148 0.852 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.040 0.960 34 H 0.036 0.964 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.343 13.261 4.846 15.913 hybrid contribution -0.773 -1.494 -0.874 1.896 sum 6.569 11.767 3.971 14.049 Atomic orbital electron populations 1.20939 0.90550 1.04119 1.02329 1.19934 0.96756 0.92360 1.01479 1.20722 0.91810 0.98524 0.93506 1.30145 1.05785 1.18473 1.21817 1.04839 0.74480 0.74602 0.77456 1.30231 1.12188 1.11958 1.25691 1.93560 1.65090 1.62285 1.73257 1.93560 1.43149 1.83997 1.73501 1.20804 0.99653 0.91242 0.93262 1.21219 0.94055 0.98150 1.02426 1.20647 0.93901 0.96298 0.89338 1.21038 0.98530 0.90875 1.02354 1.19090 0.96822 0.96479 0.88242 1.21253 1.35664 1.06328 0.92948 0.92443 1.25012 0.96130 0.97557 0.95583 1.69968 1.46468 1.39087 0.97736 0.86529 0.79623 0.83663 0.78157 1.19671 1.20954 1.20965 0.91398 0.91790 0.89244 0.84718 0.84966 0.85414 0.84963 0.84723 0.85167 0.91313 0.91722 0.96003 0.96377 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 9.22 36.00 0.33 -1.49 16 2 C -0.10 -1.69 5.88 -104.63 -0.62 -2.31 16 3 C -0.03 -0.38 9.13 -39.58 -0.36 -0.75 16 4 C -0.67 -9.07 5.66 -39.58 -0.22 -9.29 16 5 S 2.51 27.21 5.80 -107.50 -0.62 26.59 16 6 C -0.65 -4.49 10.80 101.05 1.09 -3.40 16 7 O -0.94 -12.93 17.13 -57.54 -0.99 -13.91 16 8 O -0.94 -12.87 17.13 -57.54 -0.99 -13.86 16 9 C -0.03 -0.43 9.47 -39.58 -0.37 -0.80 16 10 C -0.14 -2.21 9.68 -39.58 -0.38 -2.60 16 11 C 0.00 -0.03 5.13 -104.62 -0.54 -0.57 16 12 C -0.09 -1.77 4.59 -27.88 -0.13 -1.90 16 13 C 0.03 0.75 4.76 -27.88 -0.13 0.61 16 14 C -0.52 -14.13 9.11 -34.44 -0.31 -14.45 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 18 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 24 H 0.09 1.53 5.40 -51.93 -0.28 1.25 16 25 H 0.14 1.65 7.57 -52.49 -0.40 1.25 16 26 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.13 0.63 8.14 -51.92 -0.42 0.21 16 28 H 0.13 0.78 8.14 -51.92 -0.42 0.36 16 29 H 0.13 1.57 7.57 -52.49 -0.40 1.17 16 30 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.07 1.29 7.01 -51.93 -0.36 0.93 16 32 H 0.06 1.22 8.05 -51.93 -0.42 0.80 16 33 H 0.02 0.56 6.88 -51.93 -0.36 0.20 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 308.46 15.07 4.65 4.65 Total: -1.00 -33.99 308.46 -8.69 -42.68 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -4.71 Total: -1.44 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: -1.74 Total: -35.40 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.74 Total: -25.24 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -1.97 Total: -27.77 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 27.21 SS G_CDS: -0.62 Total: 26.59 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.99 -8.69 -42.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260598542.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.142 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds